Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 1.5e-255 885.9 553 100.0
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 1.3e-206 723.4 484 82.9
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 5.0e-206 721.5 510 80.0
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 1.2e-204 716.8 518 80.5
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 1.1e-197 693.7 485 83.3
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 9.5e-197 690.6 504 80.0
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 1.2e-196 690.3 501 79.0
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 6.2e-196 688.0 486 80.5
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 1.4e-195 686.8 484 81.4
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 5.2e-195 684.9 516 78.3
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 5.2e-195 684.9 485 80.4
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 1.5e-194 683.3 535 74.2
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 3.4e-194 682.2 486 79.4
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 2.4e-192 676.0 483 79.3
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 7.1e-192 674.5 483 79.7
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.1e-191 672.9 499 78.8
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 1.0e-190 670.6 499 79.0
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 1.1e-189 667.2 484 79.1
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 2.1e-188 662.9 505 76.8
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 2.8e-188 662.5 509 74.5
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 2.3e-187 659.4 510 76.7
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 3.1e-187 659.1 502 78.5
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 4.0e-187 658.7 487 77.2
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 2.9e-185 652.5 507 77.7
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.9e-184 649.8 483 78.1
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 9.2e-184 647.5 498 77.3
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 1.3e-182 643.7 512 76.8
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 2.3e-182 642.9 499 75.4
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.0e-182 642.5 513 75.2
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 3.0e-182 642.5 489 76.1
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 3.0e-182 642.5 482 77.6
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 8.6e-182 641.0 484 74.0
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.5e-181 639.4 497 75.1
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 3.3e-181 639.0 486 77.0
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 1.6e-180 636.7 503 77.9
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 3.6e-180 635.6 450 80.7
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 6.2e-180 634.8 451 77.2
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 1.8e-179 633.3 502 72.5
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 9.9e-178 627.5 478 79.3
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 1.3e-177 627.1 449 75.7
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 1.7e-177 626.7 484 76.4
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 1.7e-177 626.7 449 75.9
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 2.9e-177 625.9 501 74.7
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 4.9e-177 625.2 482 75.3
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 1.9e-176 623.2 518 73.4
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 9.3e-176 620.9 502 73.9
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 1.2e-175 620.5 448 75.7
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 3.5e-175 619.0 446 79.6
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 3.5e-175 619.0 506 71.3
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 4.6e-175 618.6 483 76.6
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 3.3e-173 612.5 505 74.9
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 3.6e-172 609.0 514 71.2
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 3.6e-172 609.0 499 71.7
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 6.2e-172 608.2 484 73.1
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 6.2e-172 608.2 484 73.1
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 3.1e-171 605.9 486 72.8
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 1.2e-170 604.0 484 71.3
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 5.8e-170 601.7 485 72.8
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 1.7e-169 600.1 483 72.7
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 4.9e-169 598.6 485 72.8
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 8.4e-169 597.8 501 75.0
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 1.4e-168 597.0 450 76.7
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 1.9e-168 596.7 507 73.4
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 1.9e-168 596.7 501 70.3
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 5.4e-168 595.1 484 71.9
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 5.4e-168 595.1 450 76.4
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 2.1e-167 593.2 495 69.5
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 6.0e-167 591.7 513 70.6
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 1.7e-166 590.1 483 74.7
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 9.0e-163 577.8 500 70.0
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 8.4e-161 571.2 449 76.2
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 2.7e-159 566.2 483 68.9
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 4.6e-159 565.5 506 66.4
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 2.5e-157 559.7 374 84.8
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 7.4e-157 558.1 527 67.6
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 1.3e-156 557.4 501 67.9
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 1.1e-155 554.3 458 69.7
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 4.5e-154 548.9 448 71.0
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 4.9e-153 545.4 508 67.9
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 2.1e-151 540.0 375 80.8
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.0e-150 537.7 465 68.4
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 1.3e-148 530.8 375 78.9
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 4.1e-147 525.8 450 70.2
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 2.0e-146 523.5 374 77.8
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 2.9e-145 519.6 484 65.1
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 4.6e-143 512.3 496 60.3
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 8.7e-142 508.1 388 75.0
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 2.6e-138 496.5 573 56.7
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 5.9e-130 468.8 391 71.4
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 3.2e-128 463.0 476 61.8
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 1.4e-123 447.6 450 65.6
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 4.1e-123 446.0 363 79.1
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 1.5e-120 437.6 383 72.6
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 3.6e-119 433.0 368 74.2
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 3.6e-119 433.0 501 53.1
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 1.1e-112 411.4 375 68.3
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 1.5e-112 411.0 342 73.4
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 9.4e-112 408.3 308 78.2
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 6.8e-110 402.1 390 69.7
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 5.7e-109 399.1 466 53.2
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 1.4e-107 394.4 289 78.2
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 1.0e-105 388.3 309 78.3
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 1.0e-105 388.3 336 72.0
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 2.3e-94 350.5 475 51.2
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 6.8e-86 322.4 523 47.6
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 1.7e-84 317.8 252 79.8
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 8.3e-84 315.5 252 79.8
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 7.8e-82 308.9 342 60.2
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 1.3e-81 308.1 241 72.6
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 4.9e-76 289.7 317 62.8
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 4.4e-69 266.5 331 56.2
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 6.0e-66 256.1 271 60.9
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 8.9e-62 242.3 154 77.9
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 5.8e-61 239.6 466 43.1
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 3.8e-60 236.9 245 55.5
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 1.1e-56 225.3 128 88.3
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 1.6e-55 221.5 128 85.2
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.0e-53 214.5 352 49.4
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 6.4e-52 209.5 128 85.2
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 5.6e-40 169.9 161 61.5
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 1.2e-37 162.2 472 34.1
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.7e-36 158.3 84 91.7
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 1.1e-35 155.6 144 61.8
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 2.7e-34 151.0 129 75.2
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 1.9e-32 144.8 128 75.8
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 5.3e-30 136.7 113 70.8
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 1.8e-25 121.7 285 35.1
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 6.7e-25 119.8 87 74.7
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 9.7e-24 115.9 86 70.9
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 5.3e-22 110.2 72 79.2
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.7e-20 105.1 66 83.3
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 4.2e-19 100.5 381 31.5
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 2.1e-18 98.2 94 75.5
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.7e-18 97.8 75 73.3
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.9e-17 94.0 64 81.2
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 2.9e-12 77.8 50 78.0
ECA233G0248 Erigeron canadensis HOM05D000047 ORTHO05D006606 3.7e-07 60.8 136 44.9
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 4.8e-07 60.5 294 28.6
Actinidia12052 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.1e-06 59.3 69 53.6


User provided reference genes

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