Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 2.2e-79 298.9 148 100.0
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 1.4e-38 163.3 148 55.4
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 5.4e-38 161.4 141 59.6
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 3.5e-37 158.7 141 56.7
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 8.6e-36 154.1 145 53.8
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 8.6e-36 154.1 148 55.4
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 1.9e-35 152.9 132 56.1
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 3.3e-35 152.1 144 58.3
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 4.3e-35 151.8 148 52.7
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 5.6e-35 151.4 151 55.0
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 5.6e-35 151.4 148 52.0
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 7.3e-35 151.0 141 55.3
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 7.3e-35 151.0 148 53.4
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 7.3e-35 151.0 116 63.8
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 9.5e-35 150.6 147 55.8
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 3.6e-34 148.7 145 53.8
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 3.6e-34 148.7 146 53.4
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 6.1e-34 147.9 146 51.4
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 8.0e-34 147.5 148 53.4
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 8.0e-34 147.5 140 51.4
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 1.0e-33 147.1 140 52.9
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.0e-33 145.2 140 50.7
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 4.0e-33 145.2 140 50.7
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 4.0e-33 145.2 136 54.4
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 5.2e-33 144.8 149 52.3
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 1.5e-32 143.3 146 52.1
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 1.5e-32 143.3 150 50.0
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 2.0e-32 142.9 153 52.9
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 2.0e-32 142.9 136 55.1
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 9.8e-32 140.6 144 55.6
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 6.4e-31 137.9 141 50.4
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 6.4e-31 137.9 141 51.1
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 8.3e-31 137.5 140 55.0
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.1e-30 137.1 144 52.1
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 4.1e-30 135.2 147 46.9
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 7.0e-30 134.4 137 51.1
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.2e-29 133.7 148 48.6
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.6e-29 133.3 142 50.0
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 2.7e-29 132.5 141 50.4
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 2.7e-29 132.5 115 57.4
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 6.0e-29 131.3 144 47.9
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.0e-28 130.6 149 45.6
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.3e-28 130.2 138 47.8
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.3e-28 130.2 146 44.5
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 5.0e-28 128.3 140 45.7
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 5.0e-28 128.3 146 47.9
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 8.6e-28 127.5 142 50.0
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 8.6e-28 127.5 141 46.1
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 8.6e-28 127.5 148 52.7
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.1e-27 127.1 148 43.2
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.9e-27 126.3 146 43.2
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.9e-27 126.3 132 51.5
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 3.3e-27 125.6 142 48.6
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 3.3e-27 125.6 142 48.6
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 3.3e-27 125.6 123 53.7
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 4.3e-27 125.2 138 47.1
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 7.3e-27 124.4 146 42.5
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 9.5e-27 124.0 135 48.9
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.6e-26 123.2 148 43.9
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 3.6e-26 122.1 137 46.7
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 4.7e-26 121.7 135 48.1
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 6.2e-26 121.3 142 43.7
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.1e-25 120.6 153 47.7
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 1.1e-25 120.6 142 44.4
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.1e-25 120.6 132 48.5
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 1.4e-25 120.2 135 48.1
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 1.8e-25 119.8 139 48.2
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 2.3e-25 119.4 142 43.0
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 2.3e-25 119.4 142 43.0
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 5.2e-25 118.2 143 46.9
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 6.8e-25 117.9 153 46.4
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 8.9e-25 117.5 139 44.6
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.2e-24 117.1 143 47.6
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 1.2e-24 117.1 144 43.8
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 3.4e-24 115.5 152 46.1
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 3.4e-24 115.5 145 40.7
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 7.5e-24 114.4 143 46.9
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 7.5e-24 114.4 139 48.9
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 9.8e-24 114.0 140 47.9
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 4.9e-23 111.7 142 43.7
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 6.4e-23 111.3 143 45.5
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 2.4e-22 109.4 125 50.4
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 2.4e-22 109.4 139 46.8
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 3.2e-22 109.0 137 46.0
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 3.2e-22 109.0 142 43.7
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 5.4e-22 108.2 136 47.1
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 5.4e-22 108.2 132 41.7
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 7.0e-22 107.8 153 43.1
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 1.2e-21 107.1 143 47.6
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.6e-21 106.7 135 44.4
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.6e-21 106.7 135 44.4
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 4.6e-21 105.1 115 51.3
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 7.8e-21 104.4 143 44.8
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 1.0e-20 104.0 133 42.9
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 3.9e-20 102.1 151 39.7
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 3.9e-20 102.1 144 43.8
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 5.1e-20 101.7 146 43.2
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 6.6e-20 101.3 138 41.3
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.1e-19 100.5 141 40.4
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 1.9e-19 99.8 166 39.8
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 2.5e-19 99.4 91 59.3
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 2.5e-19 99.4 144 43.8
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 3.3e-19 99.0 142 44.4
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 4.3e-19 98.6 117 47.0
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 9.5e-19 97.4 118 45.8
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 9.5e-19 97.4 148 43.2
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 1.6e-18 96.7 137 40.9
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 3.6e-18 95.5 146 40.4
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 1.1e-17 94.0 136 42.6
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 3.1e-17 92.4 145 41.4
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 2.2e-15 86.3 101 51.5
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 2.2e-15 86.3 101 51.5
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 2.2e-15 86.3 137 41.6
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 4.9e-15 85.1 145 33.8
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 4.9e-15 85.1 145 35.2
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 1.4e-14 83.6 139 37.4
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 1.4e-14 83.6 132 43.9
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.4e-14 83.6 160 33.1
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 2.4e-14 82.8 103 46.6
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 3.2e-14 82.4 101 45.5
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 4.1e-14 82.0 135 37.0
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 5.4e-14 81.6 139 36.7
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 7.1e-14 81.3 117 43.6
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 9.2e-14 80.9 135 35.6
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 1.2e-13 80.5 135 37.8
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 6.0e-13 78.2 141 35.5
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 6.0e-13 78.2 135 37.0
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 1.0e-12 77.4 135 37.0
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 1.0e-12 77.4 135 37.0
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 1.3e-12 77.0 140 36.4
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 2.3e-12 76.3 135 37.0
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 2.3e-12 76.3 148 38.5
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 3.0e-12 75.9 132 34.8
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 3.0e-12 75.9 138 34.1
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 3.0e-12 75.9 106 46.2
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 5.1e-12 75.1 138 34.8
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 6.6e-12 74.7 135 36.3
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 8.6e-12 74.3 136 33.8
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 1.1e-11 73.9 137 35.8
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.9e-11 73.2 138 33.3
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.9e-11 73.2 73 56.2
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 5.6e-11 71.6 113 41.6
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 7.3e-11 71.2 102 41.2
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 2.1e-10 69.7 47 66.0
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 3.6e-10 68.9 134 37.3
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 4.7e-10 68.6 98 39.8
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 6.2e-10 68.2 135 32.6
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 2.4e-09 66.2 141 31.2
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 2.4e-09 66.2 138 32.6
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.0e-09 65.5 139 29.5
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.0e-09 65.5 136 33.1
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 6.8e-09 64.7 139 31.7
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.5e-08 63.5 151 32.5
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.5e-08 63.5 146 28.1
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.6e-08 62.8 141 31.2
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.4e-08 62.0 136 30.1
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.4e-08 62.0 139 29.5
Sc26g0003380 Simmondsia chinensis HOM05D004108 ORTHO05D004849 6.4e-07 58.2 80 45.0
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.1e-06 57.4 46 56.5
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.9e-06 56.6 144 26.4
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.2e-06 55.8 137 26.3
Nitab4.5_0004768g0030 Nicotiana tabacum HOM05D004108 ORTHO05D004849 3.2e-06 55.8 93 39.8
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 7.1e-06 54.7 123 32.5
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 9.2e-06 54.3 132 28.8
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 9.2e-06 54.3 134 29.1


User provided reference genes

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