Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01006058001 Vitis vinifera HOM05D002866 ORTHO05D441252 6.3e-31 136.7 66 100.0
GSVIVG01005989001 Vitis vinifera HOM05D002866 ORTHO05D440186 1.1e-14 82.8 43 95.3
Glyma.12G241300 Glycine max HOM05D002866 ORTHO05D008706 3.9e-12 74.3 39 89.7
VMungo1127G0600 Vigna mungo HOM05D002866 ORTHO05D008706 3.9e-12 74.3 39 89.7
Ca_19791_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008706 1.1e-11 72.8 39 87.2
CiPaw.07G185900 Carya illinoinensis HOM05D002866 ORTHO05D008706 1.5e-11 72.4 39 89.7
ClCG07G016890 Citrullus lanatus HOM05D002866 ORTHO05D008706 1.5e-11 72.4 39 89.7
Gohir.A12G197200 Gossypium hirsutum HOM05D002866 ORTHO05D008706 1.5e-11 72.4 39 89.7
Gohir.D12G199800 Gossypium hirsutum HOM05D002866 ORTHO05D008706 1.5e-11 72.4 39 89.7
Gorai.008G215000 Gossypium raimondii HOM05D002866 ORTHO05D008706 1.5e-11 72.4 39 89.7
Lalb_Chr03g0033851 Lupinus albus HOM05D002866 ORTHO05D008706 1.5e-11 72.4 38 89.5
Medtr4g029530 Medicago truncatula HOM05D002866 ORTHO05D008706 1.5e-11 72.4 39 84.6
Potri.004G233400 Populus trichocarpa HOM05D002866 ORTHO05D008706 1.5e-11 72.4 39 89.7
QL09p028565 Quercus lobata HOM05D002866 ORTHO05D008706 1.5e-11 72.4 39 89.7
RcHm_v2.0_Chr1g0373901 Rosa chinensis HOM05D002866 ORTHO05D008706 1.5e-11 72.4 39 89.7
Sed0026429 Sechium edule HOM05D002866 ORTHO05D008706 1.5e-11 72.4 39 89.7
TPR.G4977 Trifolium pratense HOM05D002866 ORTHO05D008706 1.5e-11 72.4 39 87.2
Lalb_Chr01g0008171 Lupinus albus HOM05D002866 ORTHO05D008706 1.9e-11 72.0 39 87.2
Glyma.09G001400 Glycine max HOM05D002866 ORTHO05D008706 2.5e-11 71.6 39 84.6
Lsat_1_v5_gn_8_9940 Lactuca sativa HOM05D002866 ORTHO05D008706 2.5e-11 71.6 39 87.2
PGR142G0955 Punica granatum HOM05D002866 ORTHO05D008706 2.5e-11 71.6 39 79.5
Sabra01G0178500 Salix brachista HOM05D002866 ORTHO05D008706 2.5e-11 71.6 39 87.2
COL.COLO4_14065 Corchorus olitorius HOM05D002866 ORTHO05D008706 3.3e-11 71.2 39 87.2
HanXRQChr05g0139511 Helianthus annuus HOM05D002866 ORTHO05D008706 3.3e-11 71.2 39 84.6
TWI39G0340 Tripterygium wilfordii HOM05D002866 ORTHO05D008706 3.3e-11 71.2 39 87.2
Ciclev10005197m.g Citrus clementina HOM05D002866 ORTHO05D008706 4.3e-11 70.9 39 87.2
Cc02_g04580 Coffea canephora HOM05D002866 ORTHO05D008706 4.3e-11 70.9 39 84.6
Lj3g0011743 Lotus japonicus HOM05D002866 ORTHO05D008706 4.3e-11 70.9 39 84.6
MD07G1250400 Malus domestica HOM05D002866 ORTHO05D008706 4.3e-11 70.9 39 87.2
Psat7g229240 Pisum sativum HOM05D002866 ORTHO05D008706 4.3e-11 70.9 39 87.2
Prupe.2G274000 Prunus persica HOM05D002866 ORTHO05D008706 4.3e-11 70.9 39 87.2
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 5.6e-11 70.5 39 84.6
CiPaw.08G040800 Carya illinoinensis HOM05D002866 ORTHO05D008706 5.6e-11 70.5 39 84.6
THA.LOC104819416 Tarenaya hassleriana HOM05D002866 ORTHO05D008706 5.6e-11 70.5 39 84.6
Actinidia13600 Actinidia chinensis HOM05D000164 ORTHO05D000096 7.3e-11 70.1 39 84.6
Duzib205G1859 Durio zibethinus HOM05D002866 ORTHO05D008706 7.3e-11 70.1 39 87.2
FvH4_7g27080 Fragaria vesca HOM05D002866 ORTHO05D008706 7.3e-11 70.1 39 84.6
FAN01G3021 Fragaria x ananassa HOM05D002866 ORTHO05D008706 7.3e-11 70.1 39 84.6
FAN03G0071 Fragaria x ananassa HOM05D002866 ORTHO05D008706 7.3e-11 70.1 39 84.6
FAN06G0035 Fragaria x ananassa HOM05D002866 ORTHO05D008706 7.3e-11 70.1 39 84.6
FAN06G0893 Fragaria x ananassa HOM05D002866 ORTHO05D008706 7.3e-11 70.1 39 84.6
FAN10G3812 Fragaria x ananassa HOM05D002866 ORTHO05D008706 7.3e-11 70.1 39 84.6
Eucgr.K00134 Eucalyptus grandis HOM05D002866 ORTHO05D008706 9.5e-11 69.7 38 86.8
Manes.06G132500 Manihot esculenta HOM05D002866 ORTHO05D008706 9.5e-11 69.7 39 84.6
Rhsim03G0163000 Rhododendron simsii HOM05D002866 ORTHO05D008706 9.5e-11 69.7 39 84.6
CANSAT56G0863 Cannabis sativa HOM05D002866 ORTHO05D008706 1.2e-10 69.3 39 82.1
MELO3C017654.2 Cucumis melo HOM05D002866 ORTHO05D008706 1.2e-10 69.3 39 87.2
CsaV3_4G004120 Cucumis sativus L. HOM05D002866 ORTHO05D008706 1.2e-10 69.3 39 87.2
Atru.chr1.857 Acer truncatum HOM05D002866 ORTHO05D008706 1.6e-10 68.9 39 84.6
Cfa013555 Carpinus fangiana HOM05D002866 ORTHO05D008706 1.6e-10 68.9 39 84.6
Haze_22176 Corylus avellana HOM05D002866 ORTHO05D008706 1.6e-10 68.9 39 84.6
Oeu021695.1 Olea europaea HOM05D002866 ORTHO05D008706 1.6e-10 68.9 39 82.1
CAN.G485.11 Capsicum annuum HOM05D002866 ORTHO05D008706 3.6e-10 67.8 39 79.5
Nitab4.5_0001267g0040 Nicotiana tabacum HOM05D002866 ORTHO05D008706 3.6e-10 67.8 39 79.5
Nitab4.5_0002346g0030 Nicotiana tabacum HOM05D002866 ORTHO05D008706 3.6e-10 67.8 39 79.5
Solyc03g093430.3 Solanum lycopersicum HOM05D002866 ORTHO05D008706 3.6e-10 67.8 39 79.5
Sopen03g024260 Solanum pennellii HOM05D002866 ORTHO05D008706 3.6e-10 67.8 39 79.5
PGSC0003DMG400018852 Solanum tuberosum HOM05D002866 ORTHO05D008706 3.6e-10 67.8 39 79.5
vmacro22347 Vaccinium macrocarpon HOM05D002866 ORTHO05D008706 3.6e-10 67.8 39 82.1
CSS0019630 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 4.7e-10 67.4 39 79.5
CSS0049284 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 4.7e-10 67.4 39 79.5
Migut.F00510 Erythranthe guttata HOM05D002866 ORTHO05D008706 4.7e-10 67.4 39 76.9
Nn6g33864 Nelumbo nucifera HOM05D002866 ORTHO05D008706 4.7e-10 67.4 39 79.5
PSO063G2361 Papaver somniferum HOM05D002866 ORTHO05D008706 4.7e-10 67.4 39 79.5
Thecc.03G150500 Theobroma cacao HOM05D002866 ORTHO05D008706 4.7e-10 67.4 39 84.6
TAR636G1476 Trochodendron aralioides HOM05D002866 ORTHO05D008706 4.7e-10 67.4 39 79.5
MD01G1178200 Malus domestica HOM05D002866 ORTHO05D008706 6.1e-10 67.0 39 82.1
AL4G20970 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 8.0e-10 66.6 39 79.5
TAR629G0107 Trochodendron aralioides HOM05D002866 ORTHO05D008706 8.0e-10 66.6 39 79.5
Peaxi162Scf00271g00837 Petunia axillaris HOM05D002866 ORTHO05D008706 1.0e-09 66.2 39 79.5
unitig_0.g267 Utricularia gibba HOM05D002866 ORTHO05D008706 1.0e-09 66.2 39 76.9
AL8G38230 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.4e-09 65.9 39 79.5
AT5G61530 Arabidopsis thaliana HOM05D002866 ORTHO05D008706 1.4e-09 65.9 39 79.5
Carub.0008s2222 Capsella rubella HOM05D002866 ORTHO05D008706 1.4e-09 65.9 39 79.5
CARHR275300 Cardamine hirsuta HOM05D002866 ORTHO05D008706 1.4e-09 65.9 39 79.5
AL6G41360 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.8e-09 65.5 39 76.9
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 1.8e-09 65.5 39 79.5
A09p07320 Brassica napus HOM05D002866 ORTHO05D008706 1.8e-09 65.5 39 79.5
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 1.8e-09 65.5 39 79.5
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 1.8e-09 65.5 39 79.5
BraA03t13839Z Brassica rapa HOM05D002866 ORTHO05D008706 1.8e-09 65.5 39 79.5
BraA09t36387Z Brassica rapa HOM05D002866 ORTHO05D008706 1.8e-09 65.5 39 79.5
Thhalv10005440m.g Eutrema salsugineum HOM05D002866 ORTHO05D008706 1.8e-09 65.5 39 79.5
MBI04_g34101_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008706 1.8e-09 65.5 39 76.9
Sp2g24730 Schrenkiella parvula HOM05D002866 ORTHO05D008706 1.8e-09 65.5 39 79.5
AL7G45270 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 2.3e-09 65.1 39 76.9
MSTRG.135 Avicennia marina HOM05D002866 ORTHO05D008706 2.3e-09 65.1 39 76.9
BcaC04g23445 Brassica carinata HOM05D002866 ORTHO05D008706 2.3e-09 65.1 39 76.9
BcaNung01432 Brassica carinata HOM05D002866 ORTHO05D008706 2.3e-09 65.1 39 76.9
C09p08260 Brassica napus HOM05D002866 ORTHO05D008706 2.3e-09 65.1 39 76.9
BolC9t53736H Brassica oleracea HOM05D002866 ORTHO05D008706 2.3e-09 65.1 39 76.9
SGA_v2.0_scaffold60G20804 Striga asiatica HOM05D006112 ORTHO05D000096 2.3e-09 65.1 40 77.5
Os07g0486500 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008706 3.1e-09 64.7 39 79.5
Aqoxy3G02809 Aquilegia oxysepala HOM05D002866 ORTHO05D008706 6.8e-09 63.5 39 82.1
EL10Ac3g05867 Beta vulgaris HOM05D002866 ORTHO05D008706 8.9e-09 63.2 39 74.4
Zm00001eb105130 Zea mays HOM05D002866 ORTHO05D008706 8.9e-09 63.2 39 76.9
Zm00001eb321610 Zea mays HOM05D002866 ORTHO05D008706 8.9e-09 63.2 39 76.9
CDE02G3129 Ceratophyllum demersum HOM05D002866 ORTHO05D008706 4.4e-08 60.8 39 74.4
Ah.07g207580 Amaranthus hybridus HOM05D002866 ORTHO05D008706 5.8e-08 60.5 39 69.2
arahy.Tifrunner.gnm1.ann1.J95VX3 Arachis hypogaea HOM05D002866 ORTHO05D008706 1.3e-07 59.3 62 56.5
Eucgr.A02912 Eucalyptus grandis HOM05D002866 ORTHO05D008706 4.9e-07 57.4 39 66.7
arahy.Tifrunner.gnm1.ann1.E5894Z Arachis hypogaea HOM05D002866 ORTHO05D008706 6.4e-07 57.0 68 51.5
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 8.3e-07 56.6 43 67.4
ATR0057G110 Amborella trichopoda HOM05D002866 ORTHO05D008706 1.9e-06 55.5 30 83.3


User provided reference genes

Program Settings