Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.5e-83 312.0 153 100.0
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 7.5e-51 204.1 187 59.9
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 2.2e-50 202.6 146 69.9
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 6.3e-50 201.1 100 91.0
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.8e-49 199.5 110 79.1
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 4.1e-49 198.4 169 62.1
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 4.1e-49 198.4 157 66.2
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 4.1e-49 198.4 190 57.4
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 4.1e-49 198.4 110 79.1
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.0e-49 197.6 178 58.4
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 2.7e-48 195.7 172 60.5
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 2.7e-48 195.7 159 64.2
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 2.7e-48 195.7 156 64.7
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 3.5e-48 195.3 105 86.7
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 3.5e-48 195.3 153 67.3
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 4.5e-48 194.9 99 88.9
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 4.5e-48 194.9 99 88.9
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 4.5e-48 194.9 100 87.0
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 7.7e-48 194.1 145 66.2
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.0e-47 193.7 100 89.0
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.0e-47 193.7 101 83.2
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.3e-47 193.4 152 63.8
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.3e-47 193.4 112 78.6
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.7e-47 193.0 101 86.1
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.7e-47 193.0 103 86.4
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.7e-47 193.0 168 61.3
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 2.2e-47 192.6 100 88.0
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 2.2e-47 192.6 100 87.0
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.9e-47 192.2 106 81.1
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.9e-47 192.2 118 74.6
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 3.8e-47 191.8 98 87.8
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 3.8e-47 191.8 157 62.4
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 3.8e-47 191.8 155 65.2
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 3.8e-47 191.8 112 77.7
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 5.0e-47 191.4 103 83.5
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 8.5e-47 190.7 149 63.1
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 8.5e-47 190.7 100 85.0
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 8.5e-47 190.7 103 83.5
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 8.5e-47 190.7 118 77.1
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.1e-46 190.3 103 83.5
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.1e-46 190.3 100 85.0
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.1e-46 190.3 100 86.0
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 1.1e-46 190.3 107 80.4
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.1e-46 190.3 103 83.5
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.5e-46 189.9 153 64.1
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.5e-46 189.9 118 76.3
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 1.5e-46 189.9 111 75.7
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 2.5e-46 189.1 106 79.2
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 2.5e-46 189.1 100 85.0
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.5e-46 189.1 100 84.0
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.5e-46 189.1 100 84.0
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.5e-46 189.1 100 85.0
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 3.2e-46 188.7 100 83.0
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 3.2e-46 188.7 100 83.0
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 3.2e-46 188.7 100 86.0
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 3.2e-46 188.7 127 70.9
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 4.2e-46 188.3 107 79.4
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 4.2e-46 188.3 121 71.9
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.2e-46 188.3 99 83.8
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 4.2e-46 188.3 128 69.5
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 5.5e-46 188.0 125 71.2
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.5e-46 188.0 100 84.0
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 5.5e-46 188.0 127 72.4
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 7.2e-46 187.6 100 82.0
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.2e-46 187.6 100 83.0
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 9.4e-46 187.2 176 54.5
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 9.4e-46 187.2 100 85.0
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 1.2e-45 186.8 106 78.3
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.2e-45 186.8 158 59.5
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 1.2e-45 186.8 101 85.1
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.2e-45 186.8 126 69.8
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.6e-45 186.4 144 63.9
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.1e-45 186.0 101 82.2
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 2.1e-45 186.0 165 58.8
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.1e-45 186.0 116 74.1
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.7e-45 185.7 99 83.8
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 2.7e-45 185.7 100 85.0
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.7e-45 185.7 107 77.6
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 3.6e-45 185.3 107 77.6
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 3.6e-45 185.3 100 82.0
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 4.7e-45 184.9 100 83.0
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 4.7e-45 184.9 144 63.9
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 6.1e-45 184.5 110 72.7
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 6.1e-45 184.5 101 82.2
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 6.1e-45 184.5 100 79.0
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.0e-44 183.7 99 81.8
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.4e-44 183.3 141 63.1
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.4e-44 183.3 107 74.8
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.3e-44 182.6 118 71.2
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 3.0e-44 182.2 110 71.8
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.0e-44 182.2 100 78.0
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 6.8e-44 181.0 100 80.0
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 8.8e-44 180.6 107 74.8
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 8.8e-44 180.6 170 57.6
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 8.8e-44 180.6 103 75.7
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 8.8e-44 180.6 103 75.7
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.5e-43 179.9 129 64.3
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 3.4e-43 178.7 100 78.0
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.3e-42 176.8 99 76.8
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 6.3e-42 174.5 158 58.9
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 6.3e-42 174.5 103 72.8
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.3e-39 166.8 82 90.2
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.3e-39 166.0 118 66.9
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 2.5e-38 162.5 101 69.3
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 7.3e-38 161.0 83 89.2
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 2.1e-37 159.5 109 67.0
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 4.7e-37 158.3 110 64.5
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 8.0e-37 157.5 100 68.0
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.4e-36 156.8 80 85.0
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 7.5e-35 151.0 107 58.9
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.3e-34 150.2 83 78.3
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.9e-34 149.1 110 64.5
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.4e-33 146.7 176 46.6
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 4.6e-32 141.7 122 59.8
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 2.5e-30 136.0 77 74.0
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.2e-29 133.7 70 87.1
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 3.6e-29 132.1 70 85.7
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.0e-28 130.6 70 82.9
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.2e-27 127.1 105 51.4
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.7e-26 123.2 89 64.0
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.9e-26 122.5 99 48.5
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.7e-26 122.1 56 92.9
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 6.4e-26 121.3 100 47.0
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.2e-24 117.1 72 77.8
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 3.5e-24 115.5 56 85.7
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 3.5e-24 115.5 92 51.1
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 7.8e-24 114.4 83 65.1
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.0e-23 114.0 97 58.8
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.3e-23 113.6 83 65.1
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 2.3e-23 112.8 70 68.6
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.1e-22 110.5 100 58.0
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 2.3e-20 102.8 110 52.7
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 3.1e-20 102.4 60 76.7
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.2e-18 96.3 129 41.9
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 8.3e-18 94.4 103 43.7
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 2.4e-17 92.8 50 78.0
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 3.2e-17 92.4 59 67.8
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 7.8e-16 87.8 102 41.2
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.3e-15 87.0 48 77.1
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 8.6e-15 84.3 93 45.2
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 7.6e-11 71.2 49 69.4
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 3.5e-08 62.4 77 42.9
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 7.8e-08 61.2 77 41.6
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 7.3e-06 54.7 28 89.3


User provided reference genes

Program Settings