Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 3.2e-178 628.2 308 100.0
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.3e-175 618.2 308 98.4
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.2e-174 615.5 326 94.2
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 4.5e-172 607.8 316 94.9
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 1.2e-167 593.2 309 94.5
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 4.4e-159 564.7 311 88.4
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.0e-148 529.3 302 89.7
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 7.0e-141 504.2 292 83.6
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 1.2e-140 503.4 310 78.4
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 2.8e-137 492.3 298 76.5
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 8.9e-136 487.3 306 74.8
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 1.2e-135 486.9 310 74.8
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 1.5e-135 486.5 311 74.9
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 3.7e-134 481.9 293 76.5
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 4.9e-134 481.5 308 74.4
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 3.2e-133 478.8 308 73.1
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 4.1e-133 478.4 309 73.5
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 3.0e-131 472.2 312 72.4
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 3.9e-131 471.9 281 77.6
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 5.0e-131 471.5 310 74.5
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 2.5e-130 469.2 283 75.3
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 9.5e-130 467.2 283 75.3
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 9.5e-130 467.2 336 69.0
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 1.8e-128 463.0 294 73.8
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 2.3e-128 462.6 305 73.1
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 6.8e-128 461.1 288 73.3
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 2.6e-127 459.1 311 72.0
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 1.3e-126 456.8 289 74.7
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 2.2e-126 456.1 300 72.0
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 2.2e-126 456.1 288 73.6
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 6.4e-126 454.5 295 73.2
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 1.1e-125 453.8 291 72.5
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 1.4e-125 453.4 334 65.3
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 1.9e-125 453.0 316 69.9
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 4.1e-125 451.8 311 71.1
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 4.1e-125 451.8 296 72.3
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 5.4e-125 451.4 315 71.4
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 7.1e-125 451.1 284 73.6
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 1.6e-124 449.9 300 71.3
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 1.6e-124 449.9 314 69.4
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 4.6e-124 448.4 308 69.5
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 7.8e-124 447.6 274 75.9
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 1.0e-123 447.2 303 70.6
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.0e-123 447.2 284 73.2
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 2.3e-123 446.0 302 71.9
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 3.0e-123 445.7 308 70.1
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 3.9e-123 445.3 323 67.2
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 3.9e-123 445.3 301 71.4
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 1.1e-122 443.7 312 69.9
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 1.1e-122 443.7 305 69.2
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 1.5e-122 443.4 308 68.8
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 4.3e-122 441.8 297 72.4
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 6.2e-121 438.0 301 70.4
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 6.2e-121 438.0 307 69.1
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 6.2e-121 438.0 293 70.3
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 1.1e-120 437.2 297 70.4
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 5.2e-120 434.9 293 69.6
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 1.5e-119 433.3 288 70.1
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 7.6e-119 431.0 414 55.6
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 9.9e-119 430.6 309 67.3
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 9.9e-119 430.6 306 68.0
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 1.7e-118 429.9 292 70.5
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 2.9e-118 429.1 275 70.5
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 6.4e-118 427.9 304 66.1
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 1.4e-117 426.8 296 67.2
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 1.9e-117 426.4 312 66.3
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 7.1e-117 424.5 346 63.6
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 7.1e-117 424.5 301 69.4
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 1.6e-116 423.3 310 67.4
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 3.5e-116 422.2 338 63.6
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 6.0e-116 421.4 295 70.5
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 7.8e-116 421.0 298 69.8
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 1.0e-115 420.6 311 66.2
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 5.1e-115 418.3 306 66.0
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 3.3e-114 415.6 274 73.4
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 1.1e-112 410.6 327 63.6
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 1.5e-111 406.8 285 66.3
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 2.1e-108 396.4 249 78.3
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 3.5e-108 395.6 288 67.0
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 4.8e-105 385.2 347 58.8
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 1.7e-102 376.7 291 60.8
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 1.9e-98 363.2 299 55.9
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 2.8e-97 359.4 281 59.8
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 1.5e-95 353.6 299 56.9
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 1.9e-93 346.7 288 58.0
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 3.3e-90 335.9 238 68.9
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 3.9e-83 312.4 290 52.4
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 3.7e-81 305.8 196 74.5
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 3.2e-77 292.7 184 76.1
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 4.2e-77 292.4 180 77.8
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 5.5e-77 292.0 168 78.0
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 9.4e-77 291.2 176 77.8
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 9.4e-77 291.2 175 77.7
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 2.8e-73 279.6 164 79.3
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 2.9e-70 269.6 270 55.2
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 3.0e-67 259.6 287 43.2
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 1.7e-65 253.8 279 43.7
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 4.8e-65 252.3 179 64.2
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 5.0e-62 242.3 290 45.9
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 1.9e-61 240.4 162 72.2
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 7.0e-56 221.9 144 73.6
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 2.6e-50 203.4 131 71.0
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 1.7e-33 147.5 73 83.6
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 7.0e-32 142.1 96 71.9
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.2e-31 141.4 281 35.2
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 3.9e-30 136.3 341 30.5
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 2.8e-28 130.2 62 90.3
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 3.7e-25 119.8 337 27.0
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 5.4e-24 115.9 78 65.4
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 1.1e-21 108.2 134 46.3
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 9.5e-21 105.1 155 44.5
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 3.1e-11 73.6 131 38.2
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 6.8e-11 72.4 235 25.5
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-10 69.7 68 44.1
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 7.5e-10 68.9 355 24.2
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 3.5e-07 60.1 160 28.8


User provided reference genes

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