Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 0.0e+00 1110.1 691 100.0
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 1.0e-277 959.9 656 94.8
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 4.4e-276 954.5 658 95.0
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 1.2e-268 929.9 658 93.2
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 6.4e-243 844.3 698 82.7
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 4.1e-189 665.6 525 66.1
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 6.5e-179 631.7 716 65.6
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 1.2e-172 610.9 708 65.1
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 2.0e-159 567.0 517 64.2
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 4.4e-159 565.8 517 63.6
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 1.4e-144 517.7 521 58.9
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 1.9e-138 497.3 720 51.1
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 6.9e-136 488.8 521 56.4
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 2.2e-134 483.8 429 58.7
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 2.3e-131 473.8 369 61.8
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 6.6e-131 472.2 535 52.9
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 4.3e-130 469.5 510 54.9
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 5.8e-127 459.1 429 60.1
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 7.6e-127 458.8 494 55.3
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 1.7e-126 457.6 421 61.8
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 8.4e-126 455.3 527 54.5
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 2.4e-125 453.8 423 60.0
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 5.4e-125 452.6 517 54.4
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 5.4e-125 452.6 528 54.4
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 5.4e-125 452.6 527 54.3
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 7.1e-125 452.2 503 54.5
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 9.3e-125 451.8 430 61.9
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 1.2e-124 451.4 529 52.6
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 3.5e-124 449.9 394 62.9
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 1.3e-123 448.0 461 58.4
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 1.8e-123 447.6 517 54.2
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 2.3e-123 447.2 414 61.6
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 3.9e-123 446.4 430 53.7
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 6.7e-123 445.7 512 53.3
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 1.1e-122 444.9 437 58.6
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 2.5e-122 443.7 353 67.7
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 5.6e-122 442.6 512 54.1
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 5.6e-122 442.6 511 53.4
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 7.4e-122 442.2 516 52.3
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 3.7e-121 439.9 520 52.7
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 4.8e-121 439.5 426 60.6
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 6.2e-121 439.1 513 54.4
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 8.1e-121 438.7 520 52.5
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 8.1e-121 438.7 426 58.7
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 2.4e-120 437.2 517 48.2
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 9.0e-120 435.3 410 59.3
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 1.2e-119 434.9 532 50.6
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 2.6e-119 433.7 509 52.7
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 5.8e-119 432.6 417 60.4
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 9.9e-119 431.8 543 49.7
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.7e-118 431.0 358 64.2
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 2.2e-118 430.6 409 59.9
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 1.1e-117 428.3 409 58.9
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 1.4e-117 427.9 527 51.2
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 1.4e-117 427.9 513 52.2
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 1.9e-117 427.6 496 52.8
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 1.2e-116 424.9 426 57.0
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 6.0e-116 422.5 426 57.5
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 7.9e-116 422.2 478 52.5
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 1.0e-115 421.8 417 55.4
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 3.9e-115 419.9 525 51.8
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 3.9e-115 419.9 520 49.8
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 6.7e-115 419.1 499 53.7
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 1.5e-114 417.9 536 50.6
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 3.3e-114 416.8 736 39.8
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 3.3e-114 416.8 736 39.8
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 4.3e-114 416.4 405 59.0
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 9.6e-114 415.2 445 54.6
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 1.3e-113 414.8 361 63.7
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 1.3e-113 414.8 515 50.7
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 1.6e-113 414.5 484 53.9
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 1.6e-113 414.5 445 54.6
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 2.1e-113 414.1 486 52.1
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 2.1e-113 414.1 434 56.5
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 4.8e-113 412.9 359 63.5
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 8.2e-113 412.1 416 58.7
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 4.0e-112 409.8 428 55.8
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 1.2e-111 408.3 327 68.2
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 5.8e-111 406.0 513 47.8
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 1.3e-110 404.8 538 48.7
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 1.9e-109 401.0 359 63.0
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 2.7e-108 397.1 349 61.3
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 3.5e-108 396.7 494 51.6
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 3.9e-107 393.3 469 52.0
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 1.9e-106 391.0 317 65.3
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 2.5e-106 390.6 426 54.7
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 4.3e-106 389.8 427 56.9
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 7.4e-106 389.0 439 54.0
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 6.3e-105 386.0 327 66.1
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 2.9e-102 377.1 344 59.0
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 1.4e-101 374.8 365 58.6
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 1.9e-101 374.4 354 60.5
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 1.9e-101 374.4 354 60.5
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 3.2e-101 373.6 302 68.5
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 7.2e-101 372.5 365 58.6
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 7.9e-100 369.0 354 60.5
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 1.8e-99 367.9 317 62.8
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 1.8e-99 367.9 356 55.6
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 1.3e-94 351.7 361 56.8
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 1.1e-93 348.6 435 48.3
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 6.3e-89 332.8 427 48.2
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 1.2e-79 302.0 453 41.7
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 2.0e-71 274.6 485 38.1
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 2.2e-70 271.2 255 59.6
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 4.0e-59 233.8 256 47.7
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 6.3e-57 226.5 394 37.3
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 1.6e-44 185.3 351 38.5
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 2.9e-41 174.5 364 37.6
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 3.6e-28 131.0 348 33.3
EL10Ac2g03526 Beta vulgaris HOM05D006844 ORTHO05D008504 8.9e-27 126.3 203 47.8
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 1.9e-24 118.6 295 29.2
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 1.3e-22 112.5 346 26.3
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 1.6e-15 89.0 48 79.2
Cc01_g16930 Coffea canephora HOM05D001779 ORTHO05D001753 2.3e-06 58.5 86 29.1
Cc01_g16940 Coffea canephora HOM05D001779 ORTHO05D001753 2.3e-06 58.5 86 29.1
SGA_v2.0_scaffold171G38942 Striga asiatica HOM05D001779 ORTHO05D001753 5.1e-06 57.4 86 29.1
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 6.7e-06 57.0 103 29.1
SalBow1G4926 Salvia bowleyana HOM05D006844 ORTHO05D008504 6.7e-06 57.0 100 33.0
MSTRG.20959 Avicennia marina HOM05D001779 ORTHO05D001753 8.7e-06 56.6 86 27.9
Sabra04G0016900 Salix brachista HOM05D000891 ORTHO05D000761 8.7e-06 56.6 122 32.0


User provided reference genes

Program Settings