Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 7.2e-300 1033.1 507 100.0
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.1e-297 1025.8 507 99.2
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 3.4e-286 987.6 509 96.1
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 2.1e-267 925.2 483 95.4
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 1.1e-263 912.9 508 88.4
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 1.6e-214 749.6 510 73.1
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 1.7e-200 703.0 508 68.5
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 4.3e-188 661.8 510 65.9
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 1.3e-187 660.2 510 65.5
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 3.1e-178 629.0 509 63.1
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 5.1e-173 611.7 502 63.5
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 3.3e-172 609.0 512 60.9
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 5.3e-170 601.7 510 61.0
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 1.1e-167 594.0 512 58.0
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 2.3e-165 586.3 511 57.9
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 4.8e-163 578.6 510 58.4
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 7.0e-162 574.7 512 57.0
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 3.5e-161 572.4 512 57.0
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 7.7e-161 571.2 514 57.4
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 1.0e-160 570.9 513 56.3
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 3.8e-160 568.9 513 56.3
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 5.0e-160 568.5 516 56.8
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 1.2e-158 563.9 512 56.4
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 1.2e-158 563.9 512 56.4
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 2.7e-158 562.8 514 55.6
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 6.1e-158 561.6 510 55.7
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 1.2e-156 557.4 517 55.3
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 2.0e-156 556.6 508 55.9
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 1.7e-155 553.5 510 56.5
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 4.1e-154 548.9 492 57.7
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 5.9e-153 545.0 507 54.8
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 7.7e-153 544.7 494 57.1
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 1.7e-152 543.5 495 56.4
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 6.5e-152 541.6 511 54.2
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 3.0e-149 532.7 510 53.1
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 4.0e-149 532.3 512 53.1
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 6.8e-149 531.6 493 55.8
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 6.8e-149 531.6 511 52.8
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 8.8e-149 531.2 498 57.0
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 1.2e-148 530.8 512 53.1
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 1.3e-147 527.3 510 52.7
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 1.3e-147 527.3 513 54.4
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 4.9e-147 525.4 516 53.5
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 8.3e-147 524.6 508 53.3
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 1.2e-145 520.8 493 55.0
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 2.7e-145 519.6 506 51.4
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 3.5e-145 519.2 530 51.1
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 4.5e-145 518.8 511 53.8
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 3.8e-144 515.8 513 51.7
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 9.5e-143 511.1 511 53.4
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 1.6e-142 510.4 511 51.9
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 2.1e-142 510.0 438 58.2
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 2.8e-142 509.6 508 52.6
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 4.0e-141 505.8 522 51.0
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 1.5e-140 503.8 508 52.2
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 2.0e-140 503.4 493 53.8
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 5.7e-140 501.9 496 53.6
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 7.5e-140 501.5 505 52.7
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 1.6e-137 493.8 510 51.4
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 1.7e-136 490.3 507 50.3
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 5.0e-136 488.8 506 50.0
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 5.0e-136 488.8 491 52.1
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 1.5e-135 487.3 515 49.5
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 1.5e-135 487.3 505 52.9
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 1.9e-135 486.9 510 51.2
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 4.3e-135 485.7 511 50.1
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 5.6e-135 485.3 507 49.9
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 5.6e-135 485.3 511 49.5
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 1.2e-134 484.2 493 51.7
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 1.2e-134 484.2 493 51.1
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 1.8e-133 480.3 510 50.4
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 5.8e-132 475.3 509 48.9
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 5.8e-132 475.3 521 48.6
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 1.3e-131 474.2 512 49.4
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 8.3e-131 471.5 505 49.1
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 1.4e-130 470.7 506 48.6
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 1.4e-130 470.7 485 51.3
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 7.8e-129 464.9 513 47.8
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 1.7e-128 463.8 513 48.1
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 3.0e-128 463.0 485 51.3
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 3.9e-128 462.6 507 49.7
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 8.6e-128 461.5 509 50.1
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.5e-127 460.7 508 46.1
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 1.9e-127 460.3 518 48.1
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 8.1e-126 454.9 515 48.0
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 2.3e-125 453.4 489 49.3
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 3.4e-124 449.5 515 47.4
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 4.1e-122 442.6 519 47.2
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 9.5e-119 431.4 391 57.3
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 7.6e-116 421.8 527 44.8
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 4.6e-113 412.5 493 45.8
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 7.8e-113 411.8 345 60.3
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 2.5e-111 406.8 504 46.6
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 2.5e-111 406.8 468 48.9
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 1.7e-107 394.0 514 43.4
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 3.5e-105 386.3 401 50.1
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 6.6e-104 382.1 493 43.8
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 4.6e-97 359.4 522 40.6
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 1.4e-93 347.8 397 48.6
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 1.3e-88 331.3 335 50.1
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 1.1e-82 311.6 264 57.6
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 2.5e-82 310.5 332 50.9
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 2.5e-82 310.5 340 46.2
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 2.2e-62 244.2 198 61.6
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 2.2e-62 244.2 198 61.6
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 6.3e-62 242.7 219 57.5
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 4.2e-58 229.9 543 30.9
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 1.8e-56 224.6 540 29.1
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 1.8e-56 224.6 496 30.6
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 4.2e-50 203.4 216 48.6
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 4.1e-45 186.8 529 27.6
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 2.0e-39 167.9 191 46.6
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 2.7e-36 157.5 269 34.2
Oeu030354.1 Olea europaea HOM05D006455 ORTHO05D008098 3.0e-32 144.1 116 61.2
Manes.12G060108 Manihot esculenta HOM05D006455 ORTHO05D008098 1.5e-31 141.7 171 46.2
PGSC0003DMG400020304 Solanum tuberosum HOM05D006455 ORTHO05D008098 1.5e-31 141.7 115 61.7
EL10Ac5g10574 Beta vulgaris HOM05D006455 ORTHO05D008098 7.7e-28 129.4 115 55.7
Phvul.003G297266 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 5.2e-24 116.7 117 49.6
Zm00001eb128090 Zea mays HOM05D006455 ORTHO05D008098 1.3e-22 112.1 172 35.5
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 2.2e-22 111.3 124 46.0
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 4.9e-22 110.2 124 46.0
Oeu003682.1 Olea europaea HOM05D006455 ORTHO05D008098 1.8e-21 108.2 119 50.4
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 1.6e-12 78.6 224 29.0
Actinidia33399 Actinidia chinensis HOM05D006455 ORTHO05D008098 4.4e-07 60.5 47 51.1


User provided reference genes

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