Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 6.1e-155 550.8 289 100.0
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.7e-152 542.7 286 99.0
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.7e-147 524.6 299 93.3
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.8e-146 522.7 284 95.4
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 3.7e-136 488.4 273 95.2
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.9e-136 488.0 273 94.5
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 3.1e-130 468.8 286 83.9
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 9.9e-121 437.2 259 84.9
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 6.0e-118 427.9 290 77.6
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 9.6e-116 420.6 289 73.4
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 6.9e-114 414.5 286 75.9
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 9.0e-114 414.1 287 73.9
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 2.0e-113 412.9 289 72.7
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 9.9e-113 410.6 285 72.3
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 9.9e-113 410.6 283 73.1
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.7e-112 409.8 285 71.9
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 2.9e-112 409.1 286 72.7
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 4.9e-112 408.3 288 72.6
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.4e-111 406.8 289 71.3
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.4e-111 406.8 286 72.0
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 3.2e-111 405.6 287 73.2
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 5.4e-111 404.8 286 73.4
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 9.3e-111 404.1 287 73.2
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 1.2e-110 403.7 290 72.8
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.7e-110 402.5 286 72.0
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 3.5e-110 402.1 283 72.8
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 6.0e-110 401.4 283 73.1
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.0e-109 400.6 287 72.5
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.8e-109 399.8 286 71.7
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 2.3e-109 399.4 287 71.4
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 2.3e-109 399.4 286 71.7
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 3.0e-109 399.1 286 73.1
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 8.7e-109 397.5 283 70.7
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.1e-108 397.1 286 75.2
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.5e-108 396.7 283 71.7
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 3.3e-108 395.6 286 71.3
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 7.4e-108 394.4 283 70.7
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.3e-107 393.7 283 71.0
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.6e-107 393.3 290 71.4
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.6e-107 393.3 283 70.7
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 2.1e-107 392.9 286 70.6
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 2.1e-107 392.9 286 70.3
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 2.1e-107 392.9 286 70.6
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 3.7e-107 392.1 287 71.1
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 3.7e-107 392.1 283 71.0
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 4.8e-107 391.7 289 70.6
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.1e-106 389.0 290 70.0
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 4.0e-106 388.7 286 71.7
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 6.9e-106 387.9 290 71.4
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.5e-105 386.7 286 68.5
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.5e-105 386.7 288 70.5
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 2.0e-105 386.3 286 69.2
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 2.6e-105 386.0 286 69.6
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 4.5e-105 385.2 280 73.2
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 5.8e-105 384.8 282 70.6
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 3.8e-104 382.1 283 69.3
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 4.9e-104 381.7 285 70.2
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.4e-103 380.2 283 69.3
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 5.5e-103 378.3 283 68.2
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 7.1e-103 377.9 281 70.5
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 1.0e-101 374.0 292 67.1
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 3.9e-101 372.1 244 76.6
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 8.7e-101 370.9 292 67.5
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 3.3e-100 369.0 292 66.8
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 4.3e-100 368.6 324 63.3
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 4.3e-100 368.6 290 67.6
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 5.6e-100 368.2 297 64.6
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 9.6e-100 367.5 286 69.9
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 9.6e-100 367.5 286 69.9
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 9.6e-100 367.5 286 69.9
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.1e-99 366.3 293 65.9
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.4e-98 363.6 284 65.1
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 1.8e-98 363.2 286 67.5
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.8e-98 363.2 279 70.6
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 3.1e-98 362.5 295 67.1
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 6.9e-98 361.3 279 69.9
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 9.0e-98 360.9 268 69.0
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.5e-97 360.1 229 76.4
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 2.6e-97 359.4 286 68.2
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 2.6e-97 359.4 286 68.2
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 2.6e-97 359.4 286 68.2
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 3.4e-97 359.0 286 68.2
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 5.8e-97 358.2 286 67.8
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 5.8e-97 358.2 286 68.2
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 5.8e-97 358.2 229 76.4
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 1.0e-96 357.5 265 68.3
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.3e-96 357.1 295 65.8
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.3e-96 357.1 230 77.0
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 2.2e-96 356.3 280 67.1
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 3.8e-96 355.5 229 76.4
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 4.9e-96 355.1 216 81.0
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 4.9e-96 355.1 284 66.9
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 6.5e-96 354.8 286 67.1
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 6.5e-96 354.8 286 67.1
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 8.4e-96 354.4 292 66.4
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 8.4e-96 354.4 286 67.1
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 8.4e-96 354.4 286 66.4
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 4.2e-95 352.1 286 67.1
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 4.2e-95 352.1 283 66.1
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 5.5e-95 351.7 278 69.1
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.6e-94 350.1 293 65.2
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 2.1e-94 349.7 290 64.5
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 3.0e-93 345.9 246 74.4
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 9.7e-92 340.9 293 64.2
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.6e-91 340.1 286 64.0
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 6.9e-90 334.7 286 63.6
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 1.0e-88 330.9 246 69.5
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.7e-88 330.1 289 62.3
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 2.2e-88 329.7 243 68.3
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.2e-86 323.9 252 67.5
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 5.7e-84 315.1 229 69.0
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 5.7e-84 315.1 283 61.5
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 3.7e-83 312.4 229 68.1
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.4e-82 310.5 216 75.0
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 1.4e-82 310.5 229 67.7
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.4e-82 309.7 298 58.1
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.1e-76 290.8 235 63.8
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 5.7e-76 288.5 227 62.1
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.5e-73 280.4 293 49.5
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 3.6e-70 269.2 233 57.5
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 3.3e-68 262.7 285 49.5
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 4.8e-67 258.8 271 50.9
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.8e-61 238.0 218 61.5
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 2.0e-60 236.9 265 52.5
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.7e-57 226.5 197 53.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.0e-56 224.6 197 53.3
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.9e-56 223.0 155 70.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.9e-56 223.0 197 52.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.5e-56 221.9 197 52.3
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.7e-54 215.7 139 75.5
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.8e-53 211.5 219 56.6
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.7e-51 207.2 232 53.4
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.7e-46 189.1 197 46.7
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.1e-46 188.7 137 69.3
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 8.0e-46 188.3 266 45.9
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.6e-41 174.1 171 56.1
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-38 163.7 186 47.3
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.1e-34 151.4 119 66.4
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 5.6e-31 139.0 84 83.3
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.3e-29 133.7 183 39.3
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 7.5e-28 128.6 77 83.1
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.4e-27 125.6 206 42.2
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.4e-26 124.4 199 35.2
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.4e-26 123.6 215 42.8
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 3.5e-25 119.8 190 38.9
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 6.6e-24 115.5 99 62.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 6.6e-24 115.5 99 62.6
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 1.6e-22 110.9 217 32.7
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.8e-17 92.0 59 76.3
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 2.3e-16 90.5 91 47.3
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.5e-15 87.8 62 69.4
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.9e-15 87.4 62 69.4
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.3e-15 85.5 62 67.7
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-12 77.0 58 63.8
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.4e-12 76.3 64 64.1
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 3.2e-10 70.1 51 62.7
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 1.3e-08 64.7 60 58.3
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 1.3e-08 64.7 60 58.3
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 8.7e-08 62.0 61 54.1
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 2.1e-06 57.4 90 41.1
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 2.1e-06 57.4 44 63.6
PSO063G3446 Papaver somniferum HOM05D004334 ORTHO05D004763 2.1e-06 57.4 51 54.9
BraA03t14352Z Brassica rapa HOM05D004641 ORTHO05D022007 8.1e-06 55.5 46 58.7


User provided reference genes

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