Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g08090 Fragaria vesca HOM05D017226 ORTHO05D020714 1.4e-162 576.2 295 100.0
FAN24G0826 Fragaria x ananassa HOM05D017226 ORTHO05D020714 9.7e-156 553.5 286 99.0
FAN15G3593 Fragaria x ananassa HOM05D017226 ORTHO05D020714 7.0e-138 494.2 286 89.9
RcHm_v2.0_Chr0c38g0503051 Rosa chinensis HOM05D017226 ORTHO05D020714 3.4e-108 395.6 286 73.1
RcHm_v2.0_Chr0c38g0503081 Rosa chinensis HOM05D017226 ORTHO05D020714 8.0e-102 374.4 281 72.6
RcHm_v2.0_Chr6g0262581 Rosa chinensis HOM05D017226 ORTHO05D020714 8.0e-102 374.4 281 72.6
RcHm_v2.0_Chr6g0262601 Rosa chinensis HOM05D017226 ORTHO05D020714 4.2e-66 255.8 173 75.7
RcHm_v2.0_Chr6g0262771 Rosa chinensis HOM05D017226 ORTHO05D347534 1.9e-34 150.6 105 73.3
FAN01G0198 Fragaria x ananassa HOM05D000122 ORTHO05D020669 1.1e-18 98.2 242 32.6
RcHm_v2.0_Chr4g0395591 Rosa chinensis HOM05D001084 ORTHO05D020669 9.4e-18 95.1 273 29.7
RcHm_v2.0_Chr4g0419891 Rosa chinensis HOM05D001084 ORTHO05D020669 4.7e-17 92.8 275 29.5
Prupe.8G103700 Prunus persica HOM05D001084 ORTHO05D020669 1.4e-16 91.3 284 29.2
FAN06G4360 Fragaria x ananassa HOM05D001084 ORTHO05D020669 4.8e-14 82.8 170 33.5
FvH4_7g31862 Fragaria vesca HOM05D001084 ORTHO05D020669 3.1e-13 80.1 170 32.9
Actinidia00499 Actinidia chinensis HOM05D001084 ORTHO05D001275 2.7e-12 77.0 287 25.8
FAN24G1401 Fragaria x ananassa HOM05D001084 ORTHO05D022670 1.3e-11 74.7 264 26.1
FvH4_2g08100 Fragaria vesca HOM05D001084 ORTHO05D022645 1.7e-11 74.3 280 27.1
Sabra04G0100300 Salix brachista HOM05D001084 ORTHO05D001275 1.7e-11 74.3 294 29.9
Peaxi162Scf00016g00102 Petunia axillaris HOM05D001084 ORTHO05D001275 2.9e-11 73.6 279 27.6
FvH4_2g06181 Fragaria vesca HOM05D001084 ORTHO05D022670 3.8e-11 73.2 262 26.0
FAN24G1400 Fragaria x ananassa HOM05D001084 ORTHO05D022645 3.8e-11 73.2 280 27.1
AUR62016703 Chenopodium quinoa HOM05D001084 ORTHO05D001275 5.0e-11 72.8 284 28.2
Nitab4.5_0004280g0090 Nicotiana tabacum HOM05D001084 ORTHO05D001275 5.0e-11 72.8 279 27.2
Nitab4.5_0012349g0020 Nicotiana tabacum HOM05D001084 ORTHO05D001275 5.0e-11 72.8 279 27.2
Glyma.16G141800 Glycine max HOM05D001084 ORTHO05D001275 8.5e-11 72.0 290 27.6
AUR62003196 Chenopodium quinoa HOM05D001084 ORTHO05D001275 1.5e-10 71.2 280 28.2
Dinv26798 Davidia involucrata HOM05D001084 ORTHO05D001275 1.5e-10 71.2 293 27.3
Potri.004G150800 Populus trichocarpa HOM05D001084 ORTHO05D001275 1.9e-10 70.9 278 26.6
TWI75G0560 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 1.9e-10 70.9 293 26.6
Lj5P200T42 Lonicera japonica HOM05D001084 ORTHO05D001275 3.2e-10 70.1 283 26.5
Migut.H00526 Erythranthe guttata HOM05D001084 ORTHO05D001275 4.2e-10 69.7 206 31.1
RcHm_v2.0_Chr0c38g0503041 Rosa chinensis HOM05D001084 ORTHO05D022645 4.2e-10 69.7 211 28.4
AUR62011358 Chenopodium quinoa HOM05D001084 ORTHO05D001275 5.5e-10 69.3 284 27.8
Haze_15137 Corylus avellana HOM05D001084 ORTHO05D001275 7.2e-10 68.9 300 26.7
Glyma.02G059100 Glycine max HOM05D001084 ORTHO05D001275 7.2e-10 68.9 290 26.6
RcHm_v2.0_Chr6g0262781 Rosa chinensis HOM05D001084 ORTHO05D022645 7.2e-10 68.9 211 28.4
AUR62008013 Chenopodium quinoa HOM05D001084 ORTHO05D001275 9.4e-10 68.6 280 28.2
Ah.01g019620 Amaranthus hybridus HOM05D000626 ORTHO05D003868 1.6e-09 67.8 284 27.8
Dinv39946 Davidia involucrata HOM05D001084 ORTHO05D001275 1.6e-09 67.8 293 26.6
QL06p044956 Quercus lobata HOM05D001084 ORTHO05D001275 2.1e-09 67.4 241 26.6
FAN15G2740 Fragaria x ananassa HOM05D001084 ORTHO05D022645 4.7e-09 66.2 230 26.1
HanXRQChr14g0452271 Helianthus annuus HOM05D001084 ORTHO05D001275 4.7e-09 66.2 261 26.4
Lsat_1_v5_gn_4_175700 Lactuca sativa HOM05D001084 ORTHO05D001275 4.7e-09 66.2 294 25.2
RcHm_v2.0_Chr6g0262911 Rosa chinensis HOM05D001084 ORTHO05D022645 4.7e-09 66.2 281 27.0
Cfa004264 Carpinus fangiana HOM05D001084 ORTHO05D001275 6.1e-09 65.9 290 25.2
MSTRG.3391 Avicennia marina HOM05D001084 ORTHO05D001275 1.4e-08 64.7 249 27.3
Eucgr.I02475 Eucalyptus grandis HOM05D001084 ORTHO05D001275 1.4e-08 64.7 282 24.1
AT4G34330 Arabidopsis thaliana HOM05D001084 ORTHO05D001275 1.8e-08 64.3 269 27.9
Carub.0007s0603 Capsella rubella HOM05D001084 ORTHO05D001275 1.8e-08 64.3 212 31.6
TPR.G20277 Trifolium pratense HOM05D001084 ORTHO05D001275 1.8e-08 64.3 250 27.6
Psat4g091120 Pisum sativum HOM05D001084 ORTHO05D001275 2.3e-08 63.9 250 26.8
Hma1.2p1_0652F.1_g195940 Hydrangea macrophylla HOM05D001084 ORTHO05D001275 3.0e-08 63.5 290 26.2
Thhalv10022714m.g Eutrema salsugineum HOM05D001084 ORTHO05D001275 4.0e-08 63.2 230 26.5
MD15G1269200 Malus domestica HOM05D001084 ORTHO05D001275 4.0e-08 63.2 288 25.7
Medtr8g078100 Medicago truncatula HOM05D001084 ORTHO05D001275 4.0e-08 63.2 250 26.4
Oeu038871.1 Olea europaea HOM05D001084 ORTHO05D001275 4.0e-08 63.2 312 23.4
EL10Ac6g14896 Beta vulgaris HOM05D001084 ORTHO05D001275 5.2e-08 62.8 215 30.2
CiPaw.01G032400 Carya illinoinensis HOM05D001084 ORTHO05D001275 8.8e-08 62.0 286 25.2
Ah.02g126440 Amaranthus hybridus HOM05D001084 ORTHO05D001275 1.2e-07 61.6 274 26.6
CiPaw.02G015000 Carya illinoinensis HOM05D001084 ORTHO05D001275 1.5e-07 61.2 302 23.5
Lj4g0017599 Lotus japonicus HOM05D001084 ORTHO05D001275 1.5e-07 61.2 248 27.0
Lalb_Chr09g0322661 Lupinus albus HOM05D001084 ORTHO05D001275 2.0e-07 60.8 285 26.3
Ca_12488_v3 Cicer arietinum L. HOM05D001084 ORTHO05D001275 3.4e-07 60.1 254 24.8
Ca_12493_v3 Cicer arietinum L. HOM05D001084 ORTHO05D001275 3.4e-07 60.1 254 24.8
Phvul.003G010400 Phaseolus vulgaris HOM05D001084 ORTHO05D001275 3.4e-07 60.1 217 27.2
Aa31LG8G15440 Aethionema arabicum HOM05D001084 ORTHO05D001275 4.4e-07 59.7 213 29.1
Carub.0007s0602 Capsella rubella HOM05D001084 ORTHO05D001275 4.4e-07 59.7 223 28.7
Ca_24831_v3 Cicer arietinum L. HOM05D001084 ORTHO05D001275 4.4e-07 59.7 296 24.3
Lj7C11T1 Lonicera japonica HOM05D001084 ORTHO05D001275 4.4e-07 59.7 282 26.2
Lj2g0009408 Lotus japonicus HOM05D001084 ORTHO05D001275 5.7e-07 59.3 291 25.1
Lj1g0023568 Lotus japonicus HOM05D001084 ORTHO05D001275 7.5e-07 58.9 191 26.7
MD02G1154800 Malus domestica HOM05D001084 ORTHO05D001275 7.5e-07 58.9 287 24.4
Psat2g162280 Pisum sativum HOM05D001084 ORTHO05D001275 9.8e-07 58.5 225 26.2
Sp3g32120 Schrenkiella parvula HOM05D001084 ORTHO05D001275 9.8e-07 58.5 236 25.8
TWI73G0528 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 9.8e-07 58.5 280 23.6
BcaC04g22894 Brassica carinata HOM05D001084 ORTHO05D001275 1.3e-06 58.2 255 23.1
A09p12010 Brassica napus HOM05D001084 ORTHO05D001275 1.3e-06 58.2 256 24.2
C09p14140 Brassica napus HOM05D001084 ORTHO05D001275 1.3e-06 58.2 255 23.1
BolC9t54311H Brassica oleracea HOM05D001084 ORTHO05D001275 1.3e-06 58.2 255 23.1
BraA09t36844Z Brassica rapa HOM05D001084 ORTHO05D001275 1.3e-06 58.2 256 24.2
Lalb_Chr05g0213001 Lupinus albus HOM05D001084 ORTHO05D001275 1.3e-06 58.2 221 24.9
AL3G51980 Arabidopsis lyrata HOM05D001084 ORTHO05D001275 2.2e-06 57.4 230 27.8
Medtr5g019430 Medicago truncatula HOM05D001084 ORTHO05D001275 2.8e-06 57.0 286 23.8
Potri.007G031200 Populus trichocarpa HOM05D001084 ORTHO05D001275 2.8e-06 57.0 226 25.7
FvH4_1g14080 Fragaria vesca HOM05D001084 ORTHO05D001275 3.7e-06 56.6 231 24.2
FAN19G0364 Fragaria x ananassa HOM05D001084 ORTHO05D001275 3.7e-06 56.6 231 24.2
FAN26G2905 Fragaria x ananassa HOM05D001084 ORTHO05D001275 3.7e-06 56.6 231 24.2
SalBow1G0930 Salvia bowleyana HOM05D001084 ORTHO05D001275 3.7e-06 56.6 225 26.7
BcaB03g16654 Brassica carinata HOM05D001084 ORTHO05D001275 4.8e-06 56.2 293 23.5
Glyma.01G178400 Glycine max HOM05D001084 ORTHO05D001275 4.8e-06 56.2 285 24.6
RcHm_v2.0_Chr2g0102731 Rosa chinensis HOM05D001084 ORTHO05D001275 4.8e-06 56.2 195 25.1
Sabra07G0027100 Salix brachista HOM05D001084 ORTHO05D001275 4.8e-06 56.2 226 26.5
Sc18g0004680 Simmondsia chinensis HOM05D001084 ORTHO05D001275 4.8e-06 56.2 284 25.4
A07p02020 Brassica napus HOM05D001084 ORTHO05D001275 6.3e-06 55.8 293 23.5
BraA07t27999Z Brassica rapa HOM05D001084 ORTHO05D001275 6.3e-06 55.8 293 23.5
FAN23G1338 Fragaria x ananassa HOM05D001084 ORTHO05D001275 6.3e-06 55.8 231 23.8
FAN28G2585 Fragaria x ananassa HOM05D001084 ORTHO05D001275 6.3e-06 55.8 231 24.2
Prupe.7G148500 Prunus persica HOM05D001084 ORTHO05D001275 6.3e-06 55.8 288 24.0
Manes.13G136100 Manihot esculenta HOM05D001084 ORTHO05D001275 8.3e-06 55.5 261 21.8


User provided reference genes

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