Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 0.0e+00 1189.9 602 100.0
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 0.0e+00 1119.0 606 94.6
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 0.0e+00 1110.1 605 94.5
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 0.0e+00 1104.7 622 91.8
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 2.0e-296 1021.9 612 86.6
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 7.8e-245 850.5 610 72.0
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 2.1e-213 746.1 618 63.3
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 1.8e-209 733.0 620 62.9
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 5.3e-209 731.5 627 64.0
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 1.2e-208 730.3 619 63.2
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 3.5e-205 718.8 655 59.7
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 7.9e-205 717.6 608 62.0
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 2.3e-204 716.1 614 62.1
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 3.0e-204 715.7 522 72.6
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 4.1e-201 705.3 626 59.9
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 7.7e-200 701.0 624 60.9
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 5.5e-198 694.9 617 60.6
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 7.2e-198 694.5 618 61.7
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 1.6e-197 693.3 620 60.5
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 1.0e-196 690.6 620 60.5
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 6.7e-196 688.0 622 60.3
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 2.8e-194 682.6 620 60.6
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 3.1e-193 679.1 611 59.7
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.2e-192 677.2 620 59.2
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.5e-192 676.8 620 59.0
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 2.6e-192 676.0 634 58.8
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 4.5e-192 675.2 619 58.5
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 1.7e-191 673.3 654 57.0
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 5.5e-190 668.3 619 58.6
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 1.2e-189 667.2 634 58.4
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 6.7e-188 661.4 635 57.6
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 2.2e-183 646.4 620 56.3
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 1.2e-181 640.6 575 59.0
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 2.6e-179 632.9 613 57.6
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 5.7e-179 631.7 640 55.8
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 5.7e-179 631.7 619 56.4
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 1.3e-178 630.6 615 56.4
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 8.2e-178 627.9 618 55.5
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 1.4e-177 627.1 621 57.5
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 2.4e-177 626.3 617 58.3
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 5.3e-177 625.2 626 54.3
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 7.0e-177 624.8 618 56.5
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 1.3e-175 620.5 615 56.6
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 1.7e-175 620.2 572 60.5
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 2.9e-175 619.4 612 53.8
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 1.1e-174 617.5 612 55.6
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 1.9e-174 616.7 615 56.4
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 4.2e-174 615.5 571 55.7
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 4.2e-174 615.5 599 56.4
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 1.2e-173 614.0 612 54.6
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 1.6e-173 613.6 530 59.2
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 3.6e-173 612.5 622 55.8
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 1.0e-172 610.9 606 54.8
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 5.2e-172 608.6 608 53.5
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 9.8e-171 604.4 597 55.1
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 3.1e-169 599.4 617 55.1
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 7.0e-169 598.2 619 53.6
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 5.9e-168 595.1 609 52.4
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 2.2e-167 593.2 608 52.6
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 5.0e-167 592.0 564 54.6
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 1.5e-166 590.5 610 56.4
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 1.0e-164 584.3 603 52.7
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 1.0e-164 584.3 617 53.2
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 3.0e-164 582.8 636 52.2
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 5.2e-164 582.0 609 53.0
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 6.3e-162 575.1 605 53.1
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 2.4e-161 573.2 611 51.9
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 1.2e-160 570.9 609 51.9
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 5.9e-160 568.5 549 54.6
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 1.0e-159 567.8 573 53.8
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 1.3e-159 567.4 661 48.9
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 1.7e-159 567.0 609 53.0
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 8.6e-159 564.7 609 50.2
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 1.9e-158 563.5 613 52.0
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 2.5e-158 563.1 676 47.8
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 2.8e-157 559.7 566 53.9
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 2.0e-155 553.5 601 52.9
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 3.4e-155 552.7 513 56.3
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 1.4e-153 547.4 607 50.9
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 7.0e-153 545.0 652 48.8
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 1.6e-152 543.9 529 55.2
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 2.7e-152 543.1 594 52.0
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 5.9e-152 542.0 535 54.4
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 1.3e-151 540.8 513 55.8
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 5.0e-151 538.9 608 50.2
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 4.7e-149 532.3 638 48.7
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 1.3e-146 524.2 635 49.4
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 9.2e-145 518.1 627 46.4
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 7.8e-144 515.0 609 48.4
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 8.6e-143 511.5 496 54.6
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.2e-140 502.3 422 59.0
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 2.4e-137 493.4 623 48.8
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 9.2e-137 491.5 496 53.4
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 2.1e-136 490.3 641 44.9
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 2.9e-130 469.9 600 44.3
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 3.5e-128 463.0 405 58.0
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 1.6e-120 437.6 519 46.1
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 2.1e-104 384.0 195 95.9
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 6.3e-93 345.9 452 43.8
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 1.3e-90 338.2 543 37.9
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 3.3e-86 323.6 518 37.8
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 4.1e-84 316.6 570 38.1
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 1.8e-79 301.2 463 39.3
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 7.0e-68 262.7 303 52.8
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 3.2e-57 227.3 189 62.4
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 7.2e-49 199.5 320 37.5
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 6.6e-42 176.4 567 28.4
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 6.2e-32 143.3 425 28.7
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 3.7e-29 134.0 586 24.7
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 3.3e-25 120.9 123 52.8
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 1.2e-22 112.5 375 29.1
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.1e-18 97.1 126 48.4
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.1e-18 97.1 126 48.4
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.1e-17 95.9 126 48.4
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.1e-17 95.9 126 48.4
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 6.8e-15 86.7 63 68.3
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 1.2e-14 85.9 113 40.7
Actinidia17422 Actinidia chinensis HOM05D006562 ORTHO05D008230 6.2e-08 63.5 207 31.4
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 3.4e-06 57.8 67 46.3


User provided reference genes

Program Settings