Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2242 Fragaria x ananassa HOM05D006394 ORTHO05D008057 8.7e-179 630.2 316 100.0
FAN23G1778 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.4e-173 612.8 316 98.1
FAN26G2471 Fragaria x ananassa HOM05D006394 ORTHO05D008057 7.9e-172 607.1 321 96.3
FvH4_1g11930 Fragaria vesca HOM05D006394 ORTHO05D008057 1.0e-171 606.7 321 96.0
FAN19G0259 Fragaria x ananassa HOM05D006394 ORTHO05D008057 4.3e-170 601.3 321 95.3
RcHm_v2.0_Chr2g0099531 Rosa chinensis HOM05D006394 ORTHO05D008057 3.5e-151 538.5 323 87.0
Prupe.7G167400 Prunus persica HOM05D006394 ORTHO05D008057 8.0e-124 447.6 327 74.9
MD15G1246300 Malus domestica HOM05D006394 ORTHO05D008057 7.3e-117 424.5 327 71.9
CiPaw.07G057900 Carya illinoinensis HOM05D006394 ORTHO05D008057 2.0e-111 406.4 328 68.9
GSVIVG01018789001 Vitis vinifera HOM05D006394 ORTHO05D008057 7.5e-106 387.9 327 66.1
Duzib264G0144 Durio zibethinus HOM05D006394 ORTHO05D008057 8.3e-105 384.4 326 65.6
CsaV3_6G047020 Cucumis sativus L. HOM05D006394 ORTHO05D008057 5.1e-102 375.2 328 64.0
MELO3C007895.2 Cucumis melo HOM05D006394 ORTHO05D008057 4.3e-101 372.1 328 63.4
CANSAT01G2157 Cannabis sativa HOM05D006394 ORTHO05D008057 2.8e-100 369.4 328 63.7
Potri.005G115100 Populus trichocarpa HOM05D006394 ORTHO05D008057 1.4e-99 367.1 325 63.7
Thecc.01G019800 Theobroma cacao HOM05D006394 ORTHO05D008057 1.8e-99 366.7 326 64.4
COL.COLO4_21919 Corchorus olitorius HOM05D006394 ORTHO05D008057 5.2e-99 365.2 326 63.8
Lj4g0024758 Lotus japonicus HOM05D006394 ORTHO05D008057 2.0e-98 363.2 328 63.1
VMungo0251G2040 Vigna mungo HOM05D006394 ORTHO05D008057 2.0e-98 363.2 326 64.1
Glyma.16G129000 Glycine max HOM05D006394 ORTHO05D008057 9.9e-98 360.9 325 64.0
TWI53G2075 Tripterygium wilfordii HOM05D006394 ORTHO05D008057 2.2e-97 359.8 326 62.6
Gohir.D10G090000 Gossypium hirsutum HOM05D006394 ORTHO05D008057 3.7e-97 359.0 319 64.9
Gorai.007G195500 Gossypium raimondii HOM05D006394 ORTHO05D008057 3.7e-97 359.0 323 63.5
Gohir.D11G183600 Gossypium hirsutum HOM05D006394 ORTHO05D008057 6.4e-97 358.2 323 63.5
Gorai.011G098800 Gossypium raimondii HOM05D006394 ORTHO05D008057 4.1e-96 355.5 319 64.6
arahy.Tifrunner.gnm1.ann1.VDMC0V Arachis hypogaea HOM05D006394 ORTHO05D008057 7.1e-96 354.8 329 61.7
Eucgr.J02427 Eucalyptus grandis HOM05D006394 ORTHO05D008057 7.1e-96 354.8 329 63.2
arahy.Tifrunner.gnm1.ann1.SHNU8N Arachis hypogaea HOM05D006394 ORTHO05D008057 2.1e-95 353.2 329 61.4
Gohir.A10G098200 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.3e-94 350.5 319 63.9
Lalb_Chr09g0333101 Lupinus albus HOM05D006394 ORTHO05D008057 1.7e-94 350.1 326 62.6
Gohir.A11G175800 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.1e-93 347.4 323 63.2
Ca_22372_v3 Cicer arietinum L. HOM05D006394 ORTHO05D008057 1.4e-91 340.5 328 61.0
Glyma.02G048900 Glycine max HOM05D006394 ORTHO05D008057 1.8e-91 340.1 322 62.1
Psat4g099000 Pisum sativum HOM05D006394 ORTHO05D008057 5.2e-91 338.6 332 60.5
Medtr8g075970 Medicago truncatula HOM05D006394 ORTHO05D008057 6.8e-91 338.2 336 59.2
Ciclev10025906m.g Citrus clementina HOM05D006394 ORTHO05D008057 1.2e-90 337.4 316 61.1
Haze_03772 Corylus avellana HOM05D006394 ORTHO05D008057 5.4e-88 328.6 286 66.1
Cc07_g10630 Coffea canephora HOM05D006394 ORTHO05D008057 7.1e-88 328.2 336 57.1
Rhsim10G0213000 Rhododendron simsii HOM05D006394 ORTHO05D008057 3.5e-87 325.9 357 55.5
Actinidia22984 Actinidia chinensis HOM05D006394 ORTHO05D008057 6.0e-87 325.1 324 59.6
Nn6g32361 Nelumbo nucifera HOM05D006394 ORTHO05D008057 1.0e-86 324.3 341 59.8
PSO541G5117 Papaver somniferum HOM05D006394 ORTHO05D008057 3.0e-86 322.8 344 58.4
QL06p032614 Quercus lobata HOM05D006394 ORTHO05D008057 5.1e-86 322.0 313 54.3
PSO675G2528 Papaver somniferum HOM05D006394 ORTHO05D008057 6.6e-86 321.6 341 58.4
PGR102G2413 Punica granatum HOM05D006394 ORTHO05D008057 1.1e-83 314.3 326 59.8
DCAR_032392 Daucus carota HOM05D006394 ORTHO05D008057 7.6e-82 308.1 331 58.3
MD02G1133300 Malus domestica HOM05D006394 ORTHO05D008057 1.4e-80 303.9 296 54.4
HanXRQChr14g0441351 Helianthus annuus HOM05D006394 ORTHO05D008057 4.2e-80 302.4 330 57.0
Solyc03g033560.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 9.3e-80 301.2 336 55.4
Sopen03g006350 Solanum pennellii HOM05D006394 ORTHO05D008057 2.1e-79 300.1 336 55.1
CAN.G1735.1 Capsicum annuum HOM05D006394 ORTHO05D008057 3.5e-79 299.3 327 56.0
Hund16487 Selenicereus undatus HOM05D006394 ORTHO05D008057 3.5e-79 299.3 316 57.9
Aqoxy2G01815 Aquilegia oxysepala HOM05D006394 ORTHO05D008057 3.9e-78 295.8 344 53.8
MSTRG.2708 Avicennia marina HOM05D006394 ORTHO05D008057 8.1e-76 288.1 342 52.9
Peaxi162Scf00034g02720 Petunia axillaris HOM05D006394 ORTHO05D008057 1.4e-75 287.3 327 55.7
Sed0000291 Sechium edule HOM05D006394 ORTHO05D008057 5.3e-75 285.4 311 47.6
CDE04G0153 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 1.5e-74 283.9 347 53.0
ECA238G0838 Erigeron canadensis HOM05D006394 ORTHO05D008057 2.2e-73 280.0 332 53.0
Cpa.g.sc6.241 Carica papaya HOM05D006394 ORTHO05D008057 2.4e-72 276.6 309 48.5
Lj2C467T3 Lonicera japonica HOM05D006394 ORTHO05D008057 4.2e-72 275.8 321 47.4
Hma1.2p1_0743F.1_g211600 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 7.1e-72 275.0 315 47.9
ClCG01G020230 Citrullus lanatus HOM05D006394 ORTHO05D008057 3.9e-70 269.2 295 48.8
Phvul.003G262300 Phaseolus vulgaris HOM05D006394 ORTHO05D008057 8.7e-70 268.1 245 56.7
THA.LOC104804261 Tarenaya hassleriana HOM05D006394 ORTHO05D008057 1.3e-68 264.2 313 53.7
HPP92_007113 Vanilla planifolia HOM05D006394 ORTHO05D008057 4.8e-68 262.3 342 50.9
Migut.H01156 Erythranthe guttata HOM05D006394 ORTHO05D008057 3.1e-67 259.6 328 52.1
Sc16g0002110 Simmondsia chinensis HOM05D006394 ORTHO05D008057 4.0e-67 259.2 308 46.1
vmacro21917 Vaccinium macrocarpon HOM05D006394 ORTHO05D008057 4.0e-67 259.2 328 44.5
C07p05000 Brassica napus HOM05D006394 ORTHO05D008057 9.0e-67 258.1 314 51.9
AT2G17975 Arabidopsis thaliana HOM05D006394 ORTHO05D008057 2.2e-65 253.4 318 50.9
BcaC06g36350 Brassica carinata HOM05D006394 ORTHO05D008057 2.2e-65 253.4 314 51.6
CSS0039773 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 2.2e-65 253.4 318 45.0
Aa31LG8G15150 Aethionema arabicum HOM05D006394 ORTHO05D008057 3.8e-65 252.7 309 51.8
BcaB03g16582 Brassica carinata HOM05D006394 ORTHO05D008057 3.8e-65 252.7 315 50.5
AL3G51010 Arabidopsis lyrata HOM05D006394 ORTHO05D008057 4.9e-65 252.3 320 50.9
Manes.01G145300 Manihot esculenta HOM05D006394 ORTHO05D008057 6.5e-65 251.9 238 55.9
Sp3g31400 Schrenkiella parvula HOM05D006394 ORTHO05D008057 1.4e-64 250.8 320 51.9
Thhalv10022807m.g Eutrema salsugineum HOM05D006394 ORTHO05D008057 1.9e-64 250.4 313 51.4
BolC7t40901H Brassica oleracea HOM05D006394 ORTHO05D008057 4.2e-64 249.2 315 51.4
Sabra05G0094200 Salix brachista HOM05D006394 ORTHO05D008057 5.5e-64 248.8 295 46.1
CARHR108450 Cardamine hirsuta HOM05D006394 ORTHO05D008057 6.0e-63 245.4 320 49.7
Dinv33624 Davidia involucrata HOM05D006394 ORTHO05D008057 1.0e-62 244.6 260 60.8
TPR.G30047 Trifolium pratense HOM05D006394 ORTHO05D008057 1.1e-61 241.1 326 42.3
A07p02700 Brassica napus HOM05D006394 ORTHO05D008057 1.9e-61 240.4 313 50.5
TAR365G0979 Trochodendron aralioides HOM05D006394 ORTHO05D008057 2.1e-60 236.9 263 50.6
Carub.0003s3211 Capsella rubella HOM05D006394 ORTHO05D008057 2.8e-60 236.5 317 49.2
Actinidia28701 Actinidia chinensis HOM05D006394 ORTHO05D008057 4.8e-60 235.7 307 43.6
BraA07t28070Z Brassica rapa HOM05D006394 ORTHO05D008057 4.8e-60 235.7 314 50.3
Nitab4.5_0006119g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 6.9e-59 231.9 303 51.2
unitig_22.g6143 Utricularia gibba HOM05D006394 ORTHO05D008057 1.2e-58 231.1 362 46.4
EL10As8g23834 Beta vulgaris HOM05D006394 ORTHO05D008057 6.5e-57 225.3 276 54.0
PGSC0003DMG400022563 Solanum tuberosum HOM05D006394 ORTHO05D008057 2.5e-56 223.4 254 47.2
Nitab4.5_0000438g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 7.9e-55 218.4 356 43.8
TAR133G0002 Trochodendron aralioides HOM05D006394 ORTHO05D008057 1.8e-54 217.2 251 49.0
SalBow3G1310 Salvia bowleyana HOM05D006394 ORTHO05D008057 3.4e-50 203.0 331 36.6
SGA_v2.0_scaffold137G35082 Striga asiatica HOM05D006394 ORTHO05D008057 5.9e-50 202.2 251 55.0
SMO347G0374 Selaginella moellendorffii HOM05D006394 ORTHO05D008057 2.7e-47 193.4 330 45.5
Os04g0110600 Oryza sativa ssp. japonica HOM05D006394 ORTHO05D008057 4.3e-45 186.0 260 42.7
Zm00001eb418470 Zea mays HOM05D006394 ORTHO05D008057 6.1e-39 165.6 264 40.9
Zm00001eb411540 Zea mays HOM05D006394 ORTHO05D008057 6.7e-38 162.2 264 40.5
Zm00001eb089410 Zea mays HOM05D006394 ORTHO05D008057 8.2e-36 155.2 264 39.0
Actinidia31001 Actinidia chinensis HOM05D006394 ORTHO05D008057 3.0e-30 136.7 155 47.1
unitig_8.g2966 Utricularia gibba HOM05D006394 ORTHO05D008057 1.1e-29 134.8 298 32.6
Hma1.2p1_0589F.1_g184775 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 2.0e-29 134.0 186 42.5
Lsat_1_v5_gn_4_146641 Lactuca sativa HOM05D006394 ORTHO05D008057 3.3e-29 133.3 286 33.2
CDE02G2139 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 5.2e-22 109.4 132 48.5
ATR0421G001 Amborella trichopoda HOM05D006394 ORTHO05D008057 2.0e-21 107.5 49 91.8
CSS0034598 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 6.3e-20 102.4 47 91.5
CBR_g22407 Chara braunii HOM05D006394 ORTHO05D008057 3.5e-18 96.7 153 38.6
Sopen04g013660 Solanum pennellii HOM05D006394 ORTHO05D008057 2.1e-15 87.4 76 53.9
MBI05_g15342_MAGBIO Magnolia biondii HOM05D006394 ORTHO05D008057 2.8e-12 77.0 88 48.9
Sopen10g011120 Solanum pennellii HOM05D006394 ORTHO05D008057 5.4e-11 72.8 61 54.1
Os02g0203700 Oryza sativa ssp. japonica HOM05D001564 ORTHO05D001439 5.0e-09 66.2 178 30.3
Mapoly0019s0131 Marchantia polymorpha HOM05D001564 ORTHO05D001439 1.1e-08 65.1 157 30.6
vmacro05191 Vaccinium macrocarpon HOM05D001564 ORTHO05D001439 1.1e-08 65.1 163 27.0
Solyc08g067180.4 Solanum lycopersicum HOM05D001564 ORTHO05D001439 1.9e-08 64.3 182 28.6
PGSC0003DMG400007381 Solanum tuberosum HOM05D001564 ORTHO05D001439 1.9e-08 64.3 181 28.2
Peaxi162Scf00341g00012 Petunia axillaris HOM05D001564 ORTHO05D001439 2.5e-08 63.9 179 29.6
Oeu048467.1 Olea europaea HOM05D006394 ORTHO05D008057 4.2e-08 63.2 95 38.9
Sopen08g021120 Solanum pennellii HOM05D001564 ORTHO05D001439 4.2e-08 63.2 183 29.5
Nitab4.5_0000151g0010 Nicotiana tabacum HOM05D001564 ORTHO05D001439 5.6e-08 62.8 188 28.7
MSTRG.19608 Avicennia marina HOM05D001564 ORTHO05D001439 7.2e-08 62.4 164 27.4
MELO3C017900.2 Cucumis melo HOM05D001564 ORTHO05D001439 7.2e-08 62.4 178 28.1
CsaV3_4G001400 Cucumis sativus L. HOM05D001564 ORTHO05D001439 9.5e-08 62.0 178 28.7
MD02G1035800 Malus domestica HOM05D001564 ORTHO05D001439 9.5e-08 62.0 146 28.1
CANSAT11G0701 Cannabis sativa HOM05D001564 ORTHO05D001439 1.6e-07 61.2 150 26.0
Peaxi162Scf00641g00018 Petunia axillaris HOM05D001564 ORTHO05D001439 1.6e-07 61.2 156 28.8
Sed0001195 Sechium edule HOM05D001564 ORTHO05D001439 2.1e-07 60.8 175 28.0
Sopen04g013620 Solanum pennellii HOM05D006394 ORTHO05D008057 2.1e-07 60.8 78 46.2
GSVIVG01035819001 Vitis vinifera HOM05D001564 ORTHO05D001439 2.1e-07 60.8 180 26.1
CiPaw.08G012900 Carya illinoinensis HOM05D001564 ORTHO05D001439 2.8e-07 60.5 175 26.9
Peaxi162Scf00984g00119 Petunia axillaris HOM05D001564 ORTHO05D001439 2.8e-07 60.5 149 33.6
Cc06_g08810 Coffea canephora HOM05D001564 ORTHO05D001439 3.6e-07 60.1 154 29.2
TWI75G1763 Tripterygium wilfordii HOM05D001564 ORTHO05D001439 3.6e-07 60.1 190 27.4
BcaNung07111 Brassica carinata HOM05D001564 ORTHO05D001439 4.7e-07 59.7 185 28.6
C02p59490 Brassica napus HOM05D001564 ORTHO05D001439 4.7e-07 59.7 185 28.6
CAN.G348.2 Capsicum annuum HOM05D001564 ORTHO05D001439 4.7e-07 59.7 181 28.7
FAN09G2896 Fragaria x ananassa HOM05D001564 ORTHO05D001439 4.7e-07 59.7 186 28.5
Gohir.A05G009300 Gossypium hirsutum HOM05D001564 ORTHO05D001439 4.7e-07 59.7 182 28.6
Gohir.D05G010000 Gossypium hirsutum HOM05D001564 ORTHO05D001439 4.7e-07 59.7 182 28.6
Gorai.009G010300 Gossypium raimondii HOM05D001564 ORTHO05D001439 4.7e-07 59.7 182 28.6
PGR031G3637 Punica granatum HOM05D001564 ORTHO05D001439 4.7e-07 59.7 179 27.9
TAR383G0790 Trochodendron aralioides HOM05D001564 ORTHO05D001439 6.1e-07 59.3 181 26.5
MD15G1176000 Malus domestica HOM05D001564 ORTHO05D001439 8.0e-07 58.9 146 27.4
Manes.03G017100 Manihot esculenta HOM05D001564 ORTHO05D001439 8.0e-07 58.9 186 26.9
Sabra18G0031700 Salix brachista HOM05D001564 ORTHO05D001439 8.0e-07 58.9 183 28.4
A07p17810 Brassica napus HOM05D001564 ORTHO05D001439 1.0e-06 58.5 155 29.0
BraA07t29501Z Brassica rapa HOM05D001564 ORTHO05D001439 1.0e-06 58.5 155 29.0
CSS0036181 Camellia sinensis var. sinensis HOM05D001564 ORTHO05D001439 1.0e-06 58.5 190 26.8
ClCG07G012800 Citrullus lanatus HOM05D001564 ORTHO05D001439 1.4e-06 58.2 178 28.1
Zm00001eb205550 Zea mays HOM05D001564 ORTHO05D001439 1.4e-06 58.2 150 26.0
BcaC02g10834 Brassica carinata HOM05D001564 ORTHO05D001439 1.8e-06 57.8 152 28.9
C04p24640 Brassica napus HOM05D001564 ORTHO05D001439 1.8e-06 57.8 152 28.9
BolC4t23970H Brassica oleracea HOM05D001564 ORTHO05D001439 1.8e-06 57.8 152 28.9
CSS0037183 Camellia sinensis var. sinensis HOM05D001564 ORTHO05D001439 1.8e-06 57.8 190 26.8
CBR_g82288 Chara braunii HOM05D006394 ORTHO05D008057 1.8e-06 57.8 32 65.6
Thhalv10005026m.g Eutrema salsugineum HOM05D001564 ORTHO05D001439 1.8e-06 57.8 155 28.4
Lsat_1_v5_gn_5_98101 Lactuca sativa HOM05D001564 ORTHO05D001439 2.3e-06 57.4 157 28.0
Glyma.05G008700 Glycine max HOM05D001564 ORTHO05D001439 3.0e-06 57.0 146 28.1
Sp4g08900 Schrenkiella parvula HOM05D001564 ORTHO05D001439 3.0e-06 57.0 152 28.9
Sed0024738 Sechium edule HOM05D001564 ORTHO05D001439 3.0e-06 57.0 187 26.7
TWI34G0224 Tripterygium wilfordii HOM05D001564 ORTHO05D001439 3.0e-06 57.0 150 28.0
Cpa.g.sc115.12 Carica papaya HOM05D001564 ORTHO05D001439 4.0e-06 56.6 191 25.7
Cc11_g01930 Coffea canephora HOM05D001564 ORTHO05D001439 4.0e-06 56.6 155 28.4
CARHR118750 Cardamine hirsuta HOM05D001564 ORTHO05D001439 5.2e-06 56.2 155 28.4
MD17G1204500 Malus domestica HOM05D001564 ORTHO05D001439 5.2e-06 56.2 187 26.2
Prupe.7G239400 Prunus persica HOM05D001564 ORTHO05D001439 5.2e-06 56.2 146 28.1
DCAR_009202 Daucus carota HOM05D001564 ORTHO05D001439 6.8e-06 55.8 160 27.5
DCAR_009203 Daucus carota HOM05D001564 ORTHO05D001439 6.8e-06 55.8 160 27.5
DCAR_017833 Daucus carota HOM05D001564 ORTHO05D001439 6.8e-06 55.8 154 29.9
SHI18574 Sapria himalayana HOM05D001564 ORTHO05D001439 8.9e-06 55.5 167 25.7
Thecc.09G149700 Theobroma cacao HOM05D001564 ORTHO05D001439 8.9e-06 55.5 166 28.9
unitig_748.g7371 Utricularia gibba HOM05D001564 ORTHO05D001439 8.9e-06 55.5 154 27.9


User provided reference genes

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