Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.4e-290 1002.3 519 100.0
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.8e-285 985.3 519 98.1
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 4.5e-281 970.7 537 95.5
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 7.1e-279 963.4 519 97.1
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 7.9e-278 959.9 525 96.0
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 1.2e-257 892.9 526 89.7
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 2.2e-235 818.9 517 82.6
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 1.0e-232 810.1 522 81.2
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 4.5e-225 784.6 543 75.9
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 4.5e-225 784.6 516 77.9
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 3.8e-224 781.6 513 78.0
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 6.6e-224 780.8 519 77.8
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 1.5e-223 779.6 513 77.2
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 1.9e-223 779.2 513 77.4
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 2.5e-223 778.9 547 75.3
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 2.5e-223 778.9 516 78.5
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 2.5e-223 778.9 513 77.6
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 4.2e-223 778.1 508 78.3
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 5.6e-223 777.7 521 77.7
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.6e-222 776.2 513 77.0
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 2.8e-222 775.4 519 77.1
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 6.1e-222 774.2 521 76.8
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 1.0e-221 773.5 532 75.4
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 1.8e-221 772.7 525 75.4
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 4.0e-221 771.5 531 75.5
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 3.4e-220 768.5 500 79.0
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 3.4e-220 768.5 516 76.7
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 4.4e-220 768.1 525 76.0
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 1.3e-219 766.5 505 78.6
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 2.2e-219 765.8 496 78.2
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.4e-218 763.1 531 76.3
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 1.8e-218 762.7 502 77.5
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 1.8e-218 762.7 513 76.4
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 2.4e-218 762.3 525 75.8
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 5.4e-218 761.1 522 75.3
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 5.4e-218 761.1 517 76.4
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 1.6e-217 759.6 499 78.0
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 5.9e-217 757.7 529 73.9
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 1.0e-216 756.9 512 74.8
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 2.3e-216 755.7 527 75.3
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 3.9e-216 755.0 512 74.8
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 3.9e-216 755.0 537 73.7
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 6.6e-216 754.2 508 75.2
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.1e-215 753.4 518 74.5
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 5.6e-215 751.1 531 75.0
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 1.0e-213 746.9 512 75.0
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 3.7e-211 738.4 503 75.0
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 4.9e-211 738.0 512 74.8
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 4.9e-211 738.0 503 75.0
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 1.4e-210 736.5 503 74.8
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 3.2e-210 735.3 500 75.4
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 7.0e-210 734.2 528 72.0
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 7.0e-210 734.2 512 74.6
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 6.0e-209 731.1 513 72.3
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 1.7e-208 729.6 498 74.7
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 1.7e-208 729.6 522 72.6
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 5.0e-208 728.0 499 74.5
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 1.1e-207 726.9 536 71.5
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.9e-207 726.1 533 71.5
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 2.5e-207 725.7 539 70.5
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 2.5e-207 725.7 536 70.1
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 3.3e-207 725.3 498 74.5
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 5.6e-207 724.5 528 71.8
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 1.6e-206 723.0 495 74.9
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 1.4e-205 719.9 503 73.8
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 1.8e-205 719.5 520 71.7
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 3.1e-205 718.8 508 73.2
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 8.9e-205 717.2 525 71.2
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 8.9e-205 717.2 519 71.9
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 1.3e-203 713.4 513 72.5
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 2.2e-203 712.6 517 71.8
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 2.2e-203 712.6 545 71.2
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 3.2e-202 708.8 498 73.5
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 5.4e-202 708.0 507 72.0
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 2.1e-201 706.1 502 73.7
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 4.6e-201 704.9 500 73.2
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 1.0e-200 703.7 502 72.9
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 5.6e-199 698.0 516 69.8
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 7.3e-199 697.6 516 69.6
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 1.1e-197 693.7 598 63.4
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 4.9e-195 684.9 607 62.3
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 2.1e-193 679.5 458 75.5
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 7.8e-193 677.6 532 67.1
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 6.4e-187 657.9 590 62.0
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 2.5e-183 646.0 517 66.7
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 1.2e-180 637.1 490 67.8
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 9.9e-180 634.0 494 67.4
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 1.2e-177 627.1 576 60.6
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 6.6e-176 621.3 515 62.1
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 2.5e-175 619.4 513 63.5
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 5.6e-175 618.2 512 63.7
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 3.1e-173 612.5 426 74.2
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.6e-169 600.1 495 61.6
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.6e-169 600.1 495 61.6
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 7.9e-169 597.8 445 70.6
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 9.0e-165 584.3 436 70.0
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 3.5e-161 572.4 448 65.0
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 1.8e-152 543.5 481 58.8
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 5.3e-149 531.9 518 54.2
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 1.9e-146 523.5 397 69.0
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 2.2e-142 510.0 360 72.5
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 4.5e-140 502.3 317 80.8
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 4.5e-140 502.3 383 69.7
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 5.0e-131 472.2 325 73.5
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 8.0e-121 438.3 321 70.1
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 6.1e-105 385.6 448 54.0
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 4.0e-104 382.9 248 77.8
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 4.0e-104 382.9 248 77.0
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 1.3e-102 377.9 508 43.5
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 3.6e-97 359.8 498 43.0
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 4.0e-88 329.7 240 70.0
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 3.0e-83 313.5 483 39.5
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 3.6e-73 280.0 330 50.6
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 5.8e-71 272.7 170 78.2
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 8.7e-51 205.7 194 59.3
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 1.1e-48 198.7 118 83.9
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 9.0e-48 195.7 489 33.1
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 1.0e-43 182.2 477 33.5
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 5.7e-42 176.4 495 32.5
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 4.2e-37 160.2 115 73.0
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 1.3e-35 155.2 488 31.1
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 2.5e-34 151.0 466 31.5
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 9.7e-34 149.1 290 39.0
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 9.1e-32 142.5 450 30.9
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 5.1e-27 126.7 86 70.9
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 7.4e-26 122.9 327 33.3
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 6.3e-25 119.8 284 35.9
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 8.2e-25 119.4 284 35.6
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 1.8e-24 118.2 302 32.5
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 2.0e-23 114.8 217 37.3
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 5.9e-23 113.2 190 39.5
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 2.2e-22 111.3 348 29.9
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 6.5e-22 109.8 158 42.4
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 2.1e-20 104.8 158 41.1
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 1.8e-19 101.7 206 36.9
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 1.8e-19 101.7 271 30.6
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 1.8e-19 101.7 74 60.8
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 3.9e-19 100.5 203 36.5
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 5.7e-18 96.7 63 69.8
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 1.8e-16 91.7 356 28.1
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 2.4e-16 91.3 336 29.8
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 3.1e-16 90.9 231 31.2
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 1.0e-14 85.9 395 27.8
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 4.0e-11 73.9 321 26.5
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 7.5e-10 69.7 141 37.6
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 8.2e-09 66.2 283 27.6
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 7.0e-08 63.2 32 84.4
FAN21G2314 Fragaria x ananassa HOM05D027463 ORTHO05D206097 4.5e-07 60.5 48 64.6
FAN24G2421 Fragaria x ananassa HOM05D000203 ORTHO05D035425 5.9e-07 60.1 45 66.7
FvH4_2g02220 Fragaria vesca HOM05D027463 ORTHO05D035425 2.2e-06 58.2 44 65.9
FAN03G3401 Fragaria x ananassa HOM05D027463 ORTHO05D204185 6.5e-06 56.6 48 60.4


User provided reference genes

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