Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.7e-163 578.2 297 100.0
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 3.4e-100 369.0 202 98.0
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.4e-100 369.0 202 98.0
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.3e-99 367.1 202 97.5
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 4.6e-97 358.6 204 96.1
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.6e-94 350.1 195 95.9
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 2.4e-93 346.3 201 93.0
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.3e-87 325.5 184 96.7
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.7e-86 322.4 184 96.2
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 1.9e-79 300.1 195 82.1
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.3e-78 297.4 195 81.0
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 2.1e-78 296.6 193 81.9
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 2.8e-78 296.2 200 80.0
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 3.7e-78 295.8 193 82.4
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 8.2e-78 294.7 200 79.5
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 1.4e-77 293.9 200 79.5
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.8e-77 293.5 191 82.2
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 5.3e-77 292.0 196 81.6
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 6.9e-77 291.6 198 80.8
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.2e-76 290.8 200 79.0
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.6e-76 289.7 195 82.6
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 2.6e-76 289.7 195 82.6
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 2.9e-75 286.2 201 76.1
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 2.9e-75 286.2 201 77.6
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 2.9e-75 286.2 201 77.6
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 3.8e-75 285.8 198 76.8
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 3.8e-75 285.8 199 78.4
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 3.8e-75 285.8 199 77.4
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 1.1e-74 284.3 194 79.9
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 4.2e-74 282.3 198 78.3
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 5.5e-74 282.0 195 77.4
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 1.6e-73 280.4 199 76.4
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 3.5e-73 279.3 193 78.8
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.0e-72 277.7 193 78.2
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 1.3e-72 277.3 195 77.4
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 1.8e-72 276.9 193 78.8
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 2.3e-72 276.6 194 77.8
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.3e-72 276.6 194 78.4
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 2.3e-72 276.6 202 74.8
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 2.3e-72 276.6 200 74.0
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 3.0e-72 276.2 193 75.6
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 3.9e-72 275.8 202 74.3
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 3.9e-72 275.8 191 76.4
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 3.9e-72 275.8 193 76.7
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 3.9e-72 275.8 195 76.9
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 5.1e-72 275.4 191 76.4
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 6.7e-72 275.0 198 75.8
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 6.7e-72 275.0 193 77.7
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.5e-71 273.9 200 75.0
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 3.3e-71 272.7 194 75.8
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 3.3e-71 272.7 197 75.6
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 3.3e-71 272.7 197 75.6
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 3.3e-71 272.7 193 77.7
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 4.3e-71 272.3 195 76.9
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 4.3e-71 272.3 191 75.9
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 5.7e-71 271.9 194 77.8
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 5.7e-71 271.9 194 77.3
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 7.4e-71 271.6 193 76.7
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 7.4e-71 271.6 193 76.7
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 7.4e-71 271.6 193 76.7
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 9.7e-71 271.2 194 76.8
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.6e-70 270.4 200 74.5
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.2e-70 270.0 203 74.4
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 2.8e-70 269.6 193 75.6
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 2.8e-70 269.6 193 76.2
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.8e-70 269.6 198 73.7
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 3.7e-70 269.2 198 74.7
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 3.7e-70 269.2 191 76.4
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 4.8e-70 268.9 207 71.0
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 4.8e-70 268.9 207 71.0
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 6.3e-70 268.5 195 73.3
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 8.2e-70 268.1 193 75.6
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.1e-69 267.7 206 71.4
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 1.1e-69 267.7 195 73.8
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 1.4e-69 267.3 193 74.6
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.4e-69 267.3 195 75.9
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 1.8e-69 266.9 194 76.3
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 2.4e-69 266.5 193 74.1
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 2.4e-69 266.5 198 71.7
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 5.3e-69 265.4 206 71.4
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 9.0e-69 264.6 194 75.3
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 9.0e-69 264.6 195 72.8
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 9.0e-69 264.6 195 72.8
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 2.0e-68 263.5 194 75.3
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 2.6e-68 263.1 193 74.1
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 2.6e-68 263.1 193 73.1
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 4.5e-68 262.3 200 72.0
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 7.7e-68 261.5 200 72.5
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 1.7e-67 260.4 192 74.5
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 2.2e-67 260.0 198 71.7
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 3.8e-67 259.2 193 73.1
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 1.9e-66 256.9 201 69.7
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 6.1e-65 251.9 199 69.8
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 1.8e-64 250.4 201 68.2
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 3.9e-64 249.2 190 70.5
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 8.8e-64 248.1 183 74.9
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 2.5e-63 246.5 201 66.7
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 3.3e-63 246.1 183 72.1
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 1.3e-62 244.2 172 74.4
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 1.3e-62 244.2 196 69.9
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 4.1e-61 239.2 190 68.9
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 5.3e-61 238.8 194 65.5
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 9.1e-61 238.0 194 65.5
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 7.7e-60 235.0 184 70.1
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 7.7e-60 235.0 198 65.2
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.4e-58 230.7 204 60.8
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 5.5e-58 228.8 196 64.8
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 7.9e-57 224.9 268 47.8
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.8e-56 223.8 182 67.6
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 6.7e-56 221.9 181 67.4
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 1.1e-53 214.5 204 58.3
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.8e-45 187.2 174 66.1
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 3.5e-44 183.0 130 74.6
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 2.7e-41 173.3 193 56.5
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.5e-39 167.5 206 50.5
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 2.8e-38 163.3 196 51.5
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 1.4e-37 161.0 192 49.0
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 2.4e-37 160.2 195 51.3
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 2.7e-33 146.7 200 49.0
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 1.8e-32 144.1 98 78.6
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 6.8e-32 142.1 89 80.9
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 6.3e-30 135.6 237 40.5
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.4e-29 134.4 97 77.3
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 2.0e-28 130.6 96 74.0
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 3.5e-28 129.8 88 80.7
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 3.0e-24 116.7 194 42.8
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 1.0e-19 101.7 62 83.9
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 4.4e-15 86.3 43 88.4
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 7.0e-13 79.0 92 54.3
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 7.0e-13 79.0 39 87.2
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 3.3e-10 70.1 187 31.0
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.8e-08 64.3 62 53.2
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 1.2e-07 61.6 197 29.4
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 5.8e-07 59.3 41 78.0
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 1.7e-06 57.8 57 54.4


User provided reference genes

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