Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2249 Fragaria x ananassa HOM05D000241 ORTHO05D003908 2.0e-65 252.3 131 100.0
FAN20G2956 Fragaria x ananassa HOM05D000241 ORTHO05D003908 1.2e-62 243.0 130 95.4
FAN24G0350 Fragaria x ananassa HOM05D000241 ORTHO05D003908 6.2e-62 240.7 130 93.8
RcHm_v2.0_Chr6g0245871 Rosa chinensis HOM05D000241 ORTHO05D003908 5.6e-55 217.6 131 87.8
Prupe.8G158900 Prunus persica HOM05D000241 ORTHO05D003908 1.4e-42 176.4 129 76.0
MD05G1114500 Malus domestica HOM05D000241 ORTHO05D003908 1.9e-42 176.0 128 75.0
Dinv41426 Davidia involucrata HOM05D000241 ORTHO05D003908 1.5e-39 166.4 130 69.2
Thecc.02G068500 Theobroma cacao HOM05D000241 ORTHO05D003908 2.1e-38 162.5 104 81.7
Atru.chr5.3205 Acer truncatum HOM05D000241 ORTHO05D003908 1.4e-37 159.8 129 65.1
arahy.Tifrunner.gnm1.ann1.GLQM1M Arachis hypogaea HOM05D000241 ORTHO05D003908 4.0e-37 158.3 121 70.2
Hma1.2p1_0032F.1_g020020 Hydrangea macrophylla HOM05D000241 ORTHO05D003908 9.0e-37 157.1 105 77.1
COL.COLO4_17241 Corchorus olitorius HOM05D000241 ORTHO05D003908 2.0e-36 156.0 133 64.7
arahy.Tifrunner.gnm1.ann1.DAG01L Arachis hypogaea HOM05D000241 ORTHO05D003908 3.4e-36 155.2 102 80.4
Medtr4g075590 Medicago truncatula HOM05D000241 ORTHO05D003908 8.4e-35 150.6 95 83.2
TAR365G0378 Trochodendron aralioides HOM05D000241 ORTHO05D003908 8.4e-35 150.6 122 68.0
VMungo1127G1845 Vigna mungo HOM05D000241 ORTHO05D003908 8.4e-35 150.6 107 74.8
Duzib132G0476 Durio zibethinus HOM05D000241 ORTHO05D003908 1.1e-34 150.2 104 76.0
TAR365G0874 Trochodendron aralioides HOM05D000241 ORTHO05D003908 2.4e-34 149.1 96 80.2
Lj3g0023353 Lotus japonicus HOM05D000241 ORTHO05D003908 9.3e-34 147.1 121 66.1
Lj3g0022345 Lotus japonicus HOM05D000241 ORTHO05D003908 1.2e-33 146.7 107 72.9
Cpa.g.sc37.204 Carica papaya HOM05D000241 ORTHO05D003908 2.1e-33 146.0 108 66.7
Psat7g178080 Pisum sativum HOM05D000241 ORTHO05D003908 2.1e-33 146.0 95 80.0
Actinidia27845 Actinidia chinensis HOM05D000241 ORTHO05D003908 2.7e-33 145.6 99 76.8
Manes.04G078900 Manihot esculenta HOM05D000241 ORTHO05D003908 3.5e-33 145.2 106 70.8
RcHm_v2.0_Chr6g0245851 Rosa chinensis HOM05D000241 ORTHO05D003908 7.9e-33 144.1 131 64.1
Glyma.12G023600 Glycine max HOM05D000241 ORTHO05D003908 3.9e-32 141.7 124 60.5
Medtr4g075570 Medicago truncatula HOM05D000241 ORTHO05D003908 3.9e-32 141.7 95 75.8
PGR142G0426 Punica granatum HOM05D000241 ORTHO05D003908 3.9e-32 141.7 101 72.3
MBI18_g10386_MAGBIO Magnolia biondii HOM05D000241 ORTHO05D003908 1.1e-31 140.2 96 75.0
VMungo1127G0755 Vigna mungo HOM05D000241 ORTHO05D003908 2.1e-30 136.0 95 70.5
CsaV3_2G015640 Cucumis sativus L. HOM05D000241 ORTHO05D003908 2.8e-30 135.6 122 58.2
ClCG02G011460 Citrullus lanatus HOM05D000241 ORTHO05D003908 4.8e-30 134.8 129 59.7
Potri.009G128100 Populus trichocarpa HOM05D000241 ORTHO05D003908 8.1e-30 134.0 95 70.5
Haze_02208 Corylus avellana HOM05D000241 ORTHO05D003908 1.8e-29 132.9 82 89.0
Gorai.008G033000 Gossypium raimondii HOM05D000241 ORTHO05D003908 2.4e-29 132.5 82 85.4
Gohir.D12G032300 Gossypium hirsutum HOM05D000241 ORTHO05D003908 3.1e-29 132.1 82 84.1
Sed0018107 Sechium edule HOM05D000241 ORTHO05D003908 3.1e-29 132.1 110 63.6
TWI75G1317 Tripterygium wilfordii HOM05D000241 ORTHO05D003908 5.3e-29 131.3 96 67.7
Ciclev10028106m.g Citrus clementina HOM05D000241 ORTHO05D003908 6.9e-29 131.0 82 82.9
Glyma.11G097800 Glycine max HOM05D000241 ORTHO05D003908 6.9e-29 131.0 82 82.9
Phvul.011G025700 Phaseolus vulgaris HOM05D000241 ORTHO05D003908 6.9e-29 131.0 109 61.5
Phvul.011G025800 Phaseolus vulgaris HOM05D000241 ORTHO05D003908 6.9e-29 131.0 82 84.1
Cfa005170 Carpinus fangiana HOM05D000241 ORTHO05D003908 3.4e-28 128.6 82 85.4
QL11p047370 Quercus lobata HOM05D000241 ORTHO05D003908 2.2e-27 125.9 82 76.8
QL11p047414 Quercus lobata HOM05D000241 ORTHO05D003908 2.2e-27 125.9 130 53.1
QL11p047392 Quercus lobata HOM05D000241 ORTHO05D003908 6.4e-27 124.4 79 78.5
TPR.G15962 Trifolium pratense HOM05D000241 ORTHO05D003908 5.5e-26 121.3 79 81.0
QL11p047408 Quercus lobata HOM05D000241 ORTHO05D003908 6.0e-25 117.9 82 73.2
Lalb_Chr01g0001271 Lupinus albus HOM05D000241 ORTHO05D003908 2.3e-24 115.9 77 76.6
QL11p047314 Quercus lobata HOM05D000241 ORTHO05D003908 3.0e-24 115.5 121 52.9
Haze_27636 Corylus avellana HOM05D000241 ORTHO05D003908 1.5e-23 113.2 82 69.5
MELO3C020774.2 Cucumis melo HOM05D000241 ORTHO05D003908 9.6e-23 110.5 82 67.1
arahy.Tifrunner.gnm1.ann1.X885L6 Arachis hypogaea HOM05D000241 ORTHO05D003908 4.9e-19 98.2 99 54.5
Gohir.A12G040000 Gossypium hirsutum HOM05D000241 ORTHO05D003908 1.1e-18 97.1 82 69.5
FAN15G2085 Fragaria x ananassa HOM05D000241 ORTHO05D003908 8.7e-16 87.4 51 90.2
Haze_02209 Corylus avellana HOM05D000241 ORTHO05D003908 1.1e-15 87.0 75 58.7
arahy.Tifrunner.gnm1.ann1.TZR4FL Arachis hypogaea HOM05D000241 ORTHO05D003908 3.3e-15 85.5 105 50.5
QL11p047358 Quercus lobata HOM05D000241 ORTHO05D003908 5.7e-15 84.7 108 47.2
Lalb_Chr01g0001261 Lupinus albus HOM05D000241 ORTHO05D003908 3.7e-14 82.0 82 50.0
GSVIVG01024113001 Vitis vinifera HOM05D000241 ORTHO05D003908 8.2e-14 80.9 127 34.6
PSO541G4683 Papaver somniferum HOM05D000241 ORTHO05D003908 3.1e-13 79.0 113 37.2
Aqoxy6G01726 Aquilegia oxysepala HOM05D000241 ORTHO05D003908 4.1e-13 78.6 113 34.5
RcHm_v2.0_Chr6g0245861 Rosa chinensis HOM05D000241 ORTHO05D003908 5.3e-13 78.2 92 42.4
GSVIVG01024115001 Vitis vinifera HOM05D000241 ORTHO05D003908 6.9e-13 77.8 96 40.6
Rhsim05G0064100 Rhododendron simsii HOM05D000241 ORTHO05D003908 9.0e-13 77.4 114 38.6
PSO675G1920 Papaver somniferum HOM05D000241 ORTHO05D003908 1.2e-12 77.0 113 35.4
RcHm_v2.0_Chr6g0245841 Rosa chinensis HOM05D000241 ORTHO05D003908 1.5e-12 76.6 92 42.4
FvH4_2g02190 Fragaria vesca HOM05D000241 ORTHO05D003908 2.0e-12 76.3 92 41.3
FAN15G2169 Fragaria x ananassa HOM05D000241 ORTHO05D003908 2.0e-12 76.3 92 41.3
FAN15G3477 Fragaria x ananassa HOM05D000241 ORTHO05D003908 2.0e-12 76.3 92 41.3
CANSAT25G1665 Cannabis sativa HOM05D000241 ORTHO05D003908 3.4e-12 75.5 92 42.4
COL.COLO4_17242 Corchorus olitorius HOM05D000241 ORTHO05D003908 7.6e-12 74.3 99 37.4
MD10G1116500 Malus domestica HOM05D000241 ORTHO05D003908 1.0e-11 73.9 101 40.6
CiPaw.05G076200 Carya illinoinensis HOM05D000241 ORTHO05D003908 1.7e-11 73.2 92 42.4
MBI05_g15353_MAGBIO Magnolia biondii HOM05D000241 ORTHO05D003908 2.2e-11 72.8 109 33.9
TAR381G1346 Trochodendron aralioides HOM05D000241 ORTHO05D003908 2.2e-11 72.8 92 39.1
AUR62013107 Chenopodium quinoa HOM05D000241 ORTHO05D003908 2.9e-11 72.4 108 41.7
Solyc10g054800.2 Solanum lycopersicum HOM05D000241 ORTHO05D003908 5.0e-11 71.6 96 38.5
Solyc10g054810.2 Solanum lycopersicum HOM05D000241 ORTHO05D003908 6.5e-11 71.2 96 36.5
CAN.G564.27 Capsicum annuum HOM05D000241 ORTHO05D003908 8.4e-11 70.9 118 32.2
Solyc10g054790.2 Solanum lycopersicum HOM05D000241 ORTHO05D003908 8.4e-11 70.9 117 31.6
Sopen10g024720 Solanum pennellii HOM05D000241 ORTHO05D003908 8.4e-11 70.9 102 37.3
Thecc.02G068400 Theobroma cacao HOM05D000241 ORTHO05D003908 8.4e-11 70.9 101 36.6
Eucgr.I01369 Eucalyptus grandis HOM05D000241 ORTHO05D003908 1.1e-10 70.5 92 37.0
Gohir.D01G155300 Gossypium hirsutum HOM05D000241 ORTHO05D003908 1.1e-10 70.5 107 34.6
Gorai.002G192500 Gossypium raimondii HOM05D000241 ORTHO05D003908 1.1e-10 70.5 107 34.6
Hma1.2p1_1385F.1_g279640 Hydrangea macrophylla HOM05D000241 ORTHO05D003908 1.1e-10 70.5 92 37.0
Nn1g05881 Nelumbo nucifera HOM05D000241 ORTHO05D003908 1.1e-10 70.5 122 33.6
AUR62010112 Chenopodium quinoa HOM05D000241 ORTHO05D003908 1.4e-10 70.1 97 43.3
Lj5A186T40 Lonicera japonica HOM05D000241 ORTHO05D003908 1.4e-10 70.1 92 35.9
MBI05_g15355_MAGBIO Magnolia biondii HOM05D000241 ORTHO05D003908 1.9e-10 69.7 100 38.0
Manes.11G089200 Manihot esculenta HOM05D000241 ORTHO05D003908 1.9e-10 69.7 92 37.0
Prupe.8G159000 Prunus persica HOM05D000241 ORTHO05D003908 1.9e-10 69.7 102 35.3
Solyc10g054820.2 Solanum lycopersicum HOM05D000241 ORTHO05D003908 1.9e-10 69.7 102 34.3
PGSC0003DMG400026705 Solanum tuberosum HOM05D000241 ORTHO05D003908 2.5e-10 69.3 96 35.4
Gohir.A01G163100 Gossypium hirsutum HOM05D000241 ORTHO05D003908 3.2e-10 68.9 107 32.7
Nitab4.5_0007293g0050 Nicotiana tabacum HOM05D000241 ORTHO05D003908 3.2e-10 68.9 92 37.0
Atru.chr5.3207 Acer truncatum HOM05D000241 ORTHO05D003908 4.2e-10 68.6 124 33.1
Cfa005172 Carpinus fangiana HOM05D000241 ORTHO05D003908 4.2e-10 68.6 102 34.3
Nitab4.5_0000956g0150 Nicotiana tabacum HOM05D000241 ORTHO05D003908 4.2e-10 68.6 92 37.0
COL.COLO4_17243 Corchorus olitorius HOM05D000241 ORTHO05D003908 5.5e-10 68.2 89 34.8
Duzib052G1219 Durio zibethinus HOM05D000241 ORTHO05D003908 5.5e-10 68.2 92 35.9
PSO675G3095 Papaver somniferum HOM05D000241 ORTHO05D003908 5.5e-10 68.2 117 32.5
unitig_26.g10004 Utricularia gibba HOM05D000241 ORTHO05D003908 5.5e-10 68.2 92 37.0
Aqoxy6G02057 Aquilegia oxysepala HOM05D000241 ORTHO05D003908 7.2e-10 67.8 93 33.3
Nitab4.5_0007733g0020 Nicotiana tabacum HOM05D000241 ORTHO05D003908 7.2e-10 67.8 92 38.0
PGSC0003DMG400004438 Solanum tuberosum HOM05D000241 ORTHO05D003908 7.2e-10 67.8 92 34.8
Aqoxy6G01727 Aquilegia oxysepala HOM05D000241 ORTHO05D003908 9.3e-10 67.4 132 30.3
Solyc10g054840.2 Solanum lycopersicum HOM05D000241 ORTHO05D003908 9.3e-10 67.4 92 34.8
ECA234G4588 Erigeron canadensis HOM05D000241 ORTHO05D003908 1.2e-09 67.0 92 40.2
Sabra09G0098100 Salix brachista HOM05D000241 ORTHO05D003908 1.6e-09 66.6 98 35.7
Sopen10g024760 Solanum pennellii HOM05D000241 ORTHO05D003908 1.6e-09 66.6 92 34.8
Ah.01g009480 Amaranthus hybridus HOM05D000241 ORTHO05D003908 2.1e-09 66.2 130 33.8
Aqoxy5G01028 Aquilegia oxysepala HOM05D000241 ORTHO05D003908 2.1e-09 66.2 94 34.0
Solyc01g111010.4 Solanum lycopersicum HOM05D000057 ORTHO05D003908 2.1e-09 66.2 92 37.0
Sopen01g053070 Solanum pennellii HOM05D000241 ORTHO05D003908 2.1e-09 66.2 92 37.0
vmacro17386 Vaccinium macrocarpon HOM05D000241 ORTHO05D003908 2.1e-09 66.2 92 33.7
Actinidia32088 Actinidia chinensis HOM05D000241 ORTHO05D003908 2.7e-09 65.9 92 35.9
EL10Ac9g21460 Beta vulgaris HOM05D000241 ORTHO05D003908 2.7e-09 65.9 97 40.2
Potri.004G167000 Populus trichocarpa HOM05D000241 ORTHO05D003908 2.7e-09 65.9 92 35.9
CDE05G1340 Ceratophyllum demersum HOM05D000241 ORTHO05D003908 3.5e-09 65.5 103 37.9
Gohir.A12G039900 Gossypium hirsutum HOM05D000241 ORTHO05D003908 3.5e-09 65.5 88 37.5
Gorai.008G033100 Gossypium raimondii HOM05D000241 ORTHO05D003908 3.5e-09 65.5 88 37.5
Peaxi162Scf00684g00012 Petunia axillaris HOM05D000241 ORTHO05D003908 3.5e-09 65.5 92 35.9
SalBow3G3022 Salvia bowleyana HOM05D000241 ORTHO05D003908 3.5e-09 65.5 126 30.2
Cc08_g04450 Coffea canephora HOM05D000241 ORTHO05D003908 4.6e-09 65.1 109 33.9
HanXRQChr10g0296311 Helianthus annuus HOM05D000241 ORTHO05D003908 4.6e-09 65.1 102 34.3
Thecc.02G068300 Theobroma cacao HOM05D000241 ORTHO05D003908 4.6e-09 65.1 117 30.8
Gohir.D12G032400 Gossypium hirsutum HOM05D000241 ORTHO05D003908 6.1e-09 64.7 88 37.5
Nitab4.5_0000283g0230 Nicotiana tabacum HOM05D000241 ORTHO05D003908 6.1e-09 64.7 111 34.2
HanXRQChr10g0296301 Helianthus annuus HOM05D000241 ORTHO05D003908 7.9e-09 64.3 92 35.9
Rhsim05G0063800 Rhododendron simsii HOM05D000241 ORTHO05D003908 7.9e-09 64.3 92 34.8
Sopen10g024750 Solanum pennellii HOM05D000241 ORTHO05D003908 1.0e-08 63.9 102 32.4
CSS0031679 Camellia sinensis var. sinensis HOM05D000241 ORTHO05D003908 1.3e-08 63.5 92 33.7
Duzib132G0758 Durio zibethinus HOM05D000241 ORTHO05D003908 1.3e-08 63.5 92 35.9
Migut.N01288 Erythranthe guttata HOM05D000241 ORTHO05D003908 1.3e-08 63.5 92 37.0
Nitab4.5_0006828g0010 Nicotiana tabacum HOM05D000241 ORTHO05D003908 1.3e-08 63.5 92 35.9
Potri.009G127900 Populus trichocarpa HOM05D000241 ORTHO05D003908 1.3e-08 63.5 102 33.3
Cc02_g16660 Coffea canephora HOM05D000241 ORTHO05D003908 1.8e-08 63.2 104 34.6
Oeu010056.1 Olea europaea HOM05D000241 ORTHO05D003908 1.8e-08 63.2 92 32.6
MSTRG.27671 Avicennia marina HOM05D000241 ORTHO05D003908 2.3e-08 62.8 92 34.8
Sabra09G0098200 Salix brachista HOM05D000241 ORTHO05D003908 2.3e-08 62.8 92 34.8
Sabra09G0098400 Salix brachista HOM05D000241 ORTHO05D003908 2.3e-08 62.8 114 33.3
Cc02_g16640 Coffea canephora HOM05D000241 ORTHO05D003908 3.0e-08 62.4 92 34.8
Manes.11G089300 Manihot esculenta HOM05D000241 ORTHO05D003908 3.9e-08 62.0 96 34.4
Hund06395 Selenicereus undatus HOM05D000241 ORTHO05D003908 3.9e-08 62.0 92 32.6
TWI31G0060 Tripterygium wilfordii HOM05D000241 ORTHO05D003908 5.1e-08 61.6 88 36.4
DCAR_024203 Daucus carota HOM05D000241 ORTHO05D003908 6.7e-08 61.2 96 32.3
Potri.009G128000 Populus trichocarpa HOM05D000241 ORTHO05D003908 6.7e-08 61.2 92 34.8
Potri.009G128300 Populus trichocarpa HOM05D000241 ORTHO05D003908 8.7e-08 60.8 92 33.7
SGA_v2.0_scaffold207G41887 Striga asiatica HOM05D000241 ORTHO05D003908 1.5e-07 60.1 119 29.4
Potri.009G128500 Populus trichocarpa HOM05D000241 ORTHO05D003908 1.9e-07 59.7 92 33.7
Manes.11G089100 Manihot esculenta HOM05D000241 ORTHO05D003908 3.3e-07 58.9 82 37.8
DCAR_003692 Daucus carota HOM05D000241 ORTHO05D003908 4.3e-07 58.5 92 31.5
unitig_0.g2349 Utricularia gibba HOM05D000241 ORTHO05D003908 5.7e-07 58.2 92 33.7
Nitab4.5_0000980g0410 Nicotiana tabacum HOM05D000241 ORTHO05D003908 7.4e-07 57.8 83 36.1
Peaxi162Scf00362g01042 Petunia axillaris HOM05D000057 ORTHO05D003908 7.4e-07 57.8 83 36.1
Cpa.g.sc37.203 Carica papaya HOM05D000241 ORTHO05D003908 1.6e-06 56.6 82 34.1
PSO541G5871 Papaver somniferum HOM05D000241 ORTHO05D003908 4.8e-06 55.1 80 37.5
PGSC0003DMG400026706 Solanum tuberosum HOM05D000241 ORTHO05D003908 4.8e-06 55.1 75 40.0
Ciclev10029916m.g Citrus clementina HOM05D000241 ORTHO05D003908 8.2e-06 54.3 82 41.5
Dinv41982 Davidia involucrata HOM05D000241 ORTHO05D003908 8.2e-06 54.3 80 32.5


User provided reference genes

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