Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.7e-114 416.0 213 100.0
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.9e-113 412.5 213 99.1
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 2.6e-110 402.1 213 96.2
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 2.6e-94 349.0 215 83.7
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 2.5e-73 279.3 208 70.2
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 5.5e-68 261.5 208 66.8
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 7.2e-68 261.2 211 64.5
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 9.4e-68 260.8 208 66.8
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.1e-67 259.6 213 64.8
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.1e-67 259.6 213 64.8
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 3.6e-67 258.8 208 64.9
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 7.9e-67 257.7 200 66.5
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.0e-66 257.3 195 67.2
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 2.3e-66 256.1 213 62.4
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 2.3e-66 256.1 209 66.0
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 6.7e-66 254.6 209 64.1
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 1.5e-65 253.4 206 63.1
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 7.4e-65 251.1 202 64.9
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 7.4e-65 251.1 210 63.8
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.3e-64 250.4 198 63.6
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.7e-64 250.0 188 69.7
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.7e-64 250.0 198 63.1
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 4.8e-64 248.4 210 62.9
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 4.8e-64 248.4 207 63.3
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 6.3e-64 248.1 210 63.3
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 1.4e-63 246.9 205 62.9
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.4e-63 246.9 201 64.2
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 1.8e-63 246.5 202 64.4
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.4e-63 246.1 193 65.8
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 4.1e-63 245.4 208 62.5
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 4.1e-63 245.4 201 62.7
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 5.3e-63 245.0 200 65.0
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 6.9e-63 244.6 210 62.4
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.5e-62 243.4 202 62.9
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 5.9e-62 241.5 207 60.9
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 3.8e-61 238.8 207 60.4
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 5.0e-61 238.4 214 58.9
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.1e-60 237.3 197 62.4
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 2.5e-60 236.1 205 62.0
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 4.2e-60 235.3 199 63.3
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 7.2e-60 234.6 201 59.7
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 9.4e-60 234.2 192 62.0
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 2.7e-59 232.6 196 60.7
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 3.6e-59 232.3 211 58.3
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 2.3e-58 229.6 206 57.8
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 2.3e-58 229.6 190 61.6
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 5.1e-58 228.4 204 60.8
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 8.8e-58 227.6 209 58.9
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.1e-57 227.3 221 57.5
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.1e-57 227.3 211 55.5
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.0e-57 226.5 211 56.4
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 2.6e-57 226.1 207 58.5
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.3e-56 223.8 207 58.5
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 1.3e-56 223.8 199 60.3
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.7e-56 223.4 200 57.5
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 2.8e-56 222.6 208 57.7
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 2.8e-56 222.6 204 56.4
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 3.7e-56 222.2 195 58.5
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 4.8e-56 221.9 197 58.9
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 4.8e-56 221.9 209 55.5
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 4.8e-56 221.9 176 64.8
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 6.3e-56 221.5 207 58.0
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 6.3e-56 221.5 199 58.8
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 8.2e-56 221.1 201 55.7
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 8.2e-56 221.1 209 57.4
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 1.1e-55 220.7 207 57.0
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 9.1e-55 217.6 214 55.1
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 4.5e-54 215.3 210 54.8
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 4.5e-54 215.3 210 54.8
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 1.3e-53 213.8 202 56.4
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 2.2e-53 213.0 200 57.5
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 3.8e-53 212.2 209 54.5
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 3.8e-53 212.2 206 57.8
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.5e-52 210.3 201 54.7
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.5e-52 209.5 201 54.7
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 5.5e-52 208.4 210 53.3
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 7.2e-52 208.0 205 54.6
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 9.4e-52 207.6 214 54.7
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 1.2e-51 207.2 202 55.0
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 2.1e-51 206.5 170 61.2
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 2.7e-51 206.1 190 54.7
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 3.6e-51 205.7 201 53.2
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 4.7e-51 205.3 206 52.4
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 8.0e-51 204.5 196 55.1
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 8.0e-51 204.5 196 55.1
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 8.0e-51 204.5 207 53.6
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 1.0e-50 204.1 207 54.6
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 2.3e-50 203.0 225 51.1
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 2.3e-50 203.0 204 53.4
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 3.0e-50 202.6 207 55.6
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 4.0e-50 202.2 205 52.7
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 5.2e-50 201.8 201 56.2
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 5.2e-50 201.8 197 54.8
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 8.8e-50 201.1 200 54.5
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.1e-49 200.7 225 50.7
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 2.0e-49 199.9 205 52.2
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 4.4e-49 198.7 205 51.7
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 1.3e-48 197.2 207 50.7
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 3.7e-48 195.7 183 56.3
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 8.2e-48 194.5 195 53.3
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 1.1e-47 194.1 198 51.0
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.1e-47 194.1 205 49.3
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.8e-47 193.4 201 50.7
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 2.7e-46 189.5 206 48.1
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 1.5e-44 183.7 206 49.5
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 4.2e-44 182.2 205 48.8
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 6.1e-43 178.3 190 47.9
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 8.8e-42 174.5 199 50.8
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 5.7e-41 171.8 136 63.2
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 2.4e-39 166.4 140 59.3
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 1.3e-37 160.6 203 49.8
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 3.8e-37 159.1 205 43.4
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 1.1e-36 157.5 197 44.7
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 5.5e-36 155.2 217 44.7
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.2e-35 154.1 121 66.1
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.3e-34 149.8 121 62.8
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 3.7e-32 142.5 205 42.0
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 3.7e-32 142.5 205 42.0
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 1.1e-31 141.0 205 41.5
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 4.1e-31 139.0 205 41.0
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 1.6e-30 137.1 210 40.5
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.6e-27 125.9 208 39.9
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 3.6e-27 125.9 206 39.8
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 8.0e-27 124.8 209 39.7
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.2e-25 120.9 86 69.8
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 7.5e-25 118.2 197 41.1
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 2.2e-24 116.7 208 38.0
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 7.3e-20 101.7 173 36.4
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 2.1e-19 100.1 182 33.0
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 3.6e-19 99.4 208 35.1
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 5.2e-18 95.5 183 36.6
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 6.4e-16 88.6 184 33.7
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 1.1e-15 87.8 175 34.3
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 3.2e-15 86.3 185 33.5
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 8.1e-11 71.6 96 38.5
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 1.8e-10 70.5 197 31.5
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 3.1e-10 69.7 118 39.0
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 8.9e-10 68.2 88 35.2
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 1.2e-09 67.8 61 59.0
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 1.2e-09 67.8 71 53.5
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 1.2e-09 67.8 71 53.5
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 1.5e-09 67.4 61 59.0
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 5.8e-09 65.5 61 55.7
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 8.3e-08 61.6 73 47.9
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 1.9e-07 60.5 134 26.9
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.9e-07 60.5 48 56.2


User provided reference genes

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