Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 0.0e+00 1092.8 573 100.0
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 0.0e+00 1084.7 573 99.3
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.9e-312 1073.5 573 99.0
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.1e-308 1059.7 573 97.6
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 3.0e-302 1041.2 573 96.9
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 6.4e-289 996.9 571 91.6
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 2.6e-258 895.2 571 82.5
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 7.7e-250 867.1 571 81.1
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 2.3e-230 802.4 576 74.1
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 6.1e-223 777.7 571 72.7
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 6.6e-217 757.7 575 70.4
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 1.5e-216 756.5 571 69.7
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 1.9e-216 756.1 574 70.6
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.2e-215 753.4 573 69.5
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.8e-214 749.6 570 69.6
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.2e-213 746.9 573 69.1
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 4.4e-213 745.0 573 69.6
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 3.0e-209 732.3 574 67.8
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 3.9e-209 731.9 575 66.8
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 6.6e-209 731.1 574 67.8
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 1.1e-208 730.3 567 70.9
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.6e-207 726.5 573 67.5
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 4.0e-206 721.8 575 66.8
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.2e-205 720.3 575 68.3
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 1.5e-205 719.9 577 66.9
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 2.0e-205 719.5 580 66.2
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 4.4e-205 718.4 574 66.7
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 6.4e-204 714.5 572 67.1
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 3.2e-203 712.2 528 73.5
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 1.6e-202 709.9 575 66.1
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 3.5e-202 708.8 575 65.9
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.3e-201 706.1 582 65.6
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 8.6e-201 704.1 577 66.4
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 9.5e-200 700.7 576 65.3
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.2e-199 700.3 570 66.5
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.1e-199 699.5 576 63.5
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 2.8e-199 699.1 573 67.5
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 3.6e-199 698.7 575 65.7
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 4.7e-199 698.4 574 65.5
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 3.1e-198 695.7 612 63.7
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 9.9e-197 690.6 578 65.2
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 1.3e-196 690.3 574 65.3
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.7e-196 689.9 580 64.0
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 2.4e-195 686.0 506 70.6
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 7.1e-195 684.5 575 64.5
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 4.6e-194 681.8 573 64.9
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 3.0e-193 679.1 576 64.1
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 1.5e-192 676.8 576 63.7
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 3.3e-192 675.6 577 63.6
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 4.3e-192 675.2 574 63.9
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 4.3e-192 675.2 576 63.9
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 7.3e-192 674.5 573 63.7
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 7.3e-192 674.5 574 63.2
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 3.6e-191 672.2 576 63.2
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 1.4e-190 670.2 574 63.1
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 1.4e-190 670.2 573 62.0
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 2.4e-190 669.5 568 63.7
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 2.4e-190 669.5 568 63.7
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 4.0e-190 668.7 568 63.6
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 4.0e-190 668.7 570 63.9
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 8.9e-190 667.5 577 62.7
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 8.9e-190 667.5 570 63.7
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 8.9e-190 667.5 579 62.0
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 1.2e-189 667.2 576 64.2
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 3.4e-189 665.6 592 63.7
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 3.4e-189 665.6 571 63.4
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 2.9e-188 662.5 579 62.3
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 3.8e-188 662.1 573 62.1
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 1.1e-187 660.6 571 63.0
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 1.9e-187 659.8 598 61.0
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 3.2e-187 659.1 582 62.4
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 4.6e-186 655.2 512 66.8
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 1.7e-185 653.3 573 63.2
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 2.3e-185 652.9 573 60.7
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 6.6e-185 651.4 585 60.9
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 8.7e-185 651.0 571 61.3
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 3.3e-184 649.0 579 61.1
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 2.1e-183 646.4 593 60.9
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 2.0e-181 639.8 571 61.5
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.7e-180 636.7 588 60.0
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 3.8e-180 635.6 604 59.8
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 4.9e-180 635.2 572 61.4
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 3.6e-175 619.0 575 60.3
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 1.4e-174 617.1 660 55.5
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 5.3e-174 615.1 591 58.4
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 9.9e-173 610.9 579 59.1
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 1.3e-172 610.5 612 56.7
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 2.4e-171 606.3 477 67.5
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 4.2e-171 605.5 588 57.1
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 1.6e-170 603.6 480 66.7
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 1.0e-169 600.9 470 66.2
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.3e-169 600.5 577 59.3
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 2.3e-169 599.7 579 58.0
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 9.9e-165 584.3 511 62.6
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 1.4e-163 580.5 494 63.4
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 3.2e-163 579.3 512 63.9
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 5.1e-161 572.0 510 61.4
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 4.8e-159 565.5 558 58.2
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 2.3e-153 546.6 575 54.1
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 8.7e-153 544.7 576 55.9
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 1.4e-147 527.3 575 54.1
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.2e-141 507.7 580 50.9
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.5e-140 501.9 356 73.3
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 4.2e-139 499.2 543 51.4
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 2.3e-137 493.4 356 71.9
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 2.0e-136 490.3 592 51.2
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.1e-134 484.6 523 52.2
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 7.7e-133 478.4 483 54.7
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 7.4e-128 461.8 340 69.7
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 1.6e-125 454.1 410 60.7
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 2.3e-121 440.3 532 49.6
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 3.3e-120 436.4 400 63.5
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 1.7e-116 424.1 490 50.2
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 3.0e-113 413.3 372 62.1
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.1e-110 402.9 243 84.0
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 4.5e-109 399.4 243 80.7
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 4.5e-109 399.4 243 80.7
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 1.3e-108 397.9 418 55.7
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 3.1e-102 376.7 401 55.1
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.3e-100 370.5 232 78.0
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.3e-92 344.7 312 59.6
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 1.7e-92 344.4 438 48.9
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 5.0e-92 342.8 291 60.5
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.6e-91 339.3 192 86.5
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 2.0e-88 330.9 421 50.6
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 3.5e-85 320.1 586 37.9
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 6.8e-81 305.8 467 44.1
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 6.4e-79 299.3 327 51.1
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 2.5e-75 287.3 159 86.2
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 7.3e-75 285.8 585 36.8
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.6e-74 284.6 387 48.1
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.0e-60 238.8 143 85.3
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 2.3e-60 237.7 143 81.8
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.6e-60 236.1 128 96.1
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.5e-59 234.2 143 83.2
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 7.3e-59 232.6 180 68.9
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.8e-57 228.0 122 95.1
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 1.7e-55 221.5 134 82.8
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 2.8e-50 204.1 237 50.2
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-49 202.2 563 30.9
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 9.6e-43 179.1 501 30.1
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.0e-39 169.1 161 58.4
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.5e-38 163.3 88 96.6
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.4e-35 152.9 93 86.0
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 4.3e-27 127.1 179 45.8
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 2.4e-25 121.3 208 41.8
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 5.0e-23 113.6 554 26.5
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 1.2e-21 109.0 132 48.5
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 7.9e-21 106.3 85 70.6
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 6.7e-20 103.2 258 29.1
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 2.8e-18 97.8 257 30.0
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.8e-18 97.8 52 96.2
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 8.0e-13 79.7 45 80.0
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 5.0e-07 60.5 199 27.1


User provided reference genes

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