Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 5.0e-221 770.8 379 100.0
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 5.1e-218 760.8 382 98.7
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 1.5e-145 520.0 411 68.4
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 5.1e-117 425.2 215 98.1
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 5.7e-92 342.0 380 49.7
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 6.5e-88 328.6 380 50.3
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 3.6e-86 322.8 376 48.4
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 6.3e-83 312.0 353 49.0
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 8.2e-83 311.6 357 48.7
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 1.4e-82 310.8 363 49.0
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 7.7e-81 305.1 423 43.5
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.2e-80 303.5 393 45.0
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.6e-78 297.4 353 46.7
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.8e-77 293.9 353 47.3
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 4.0e-77 292.7 353 47.3
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 9.7e-76 288.1 369 45.0
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 3.7e-75 286.2 354 46.6
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 1.8e-74 283.9 361 45.2
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 2.4e-74 283.5 353 45.6
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 5.3e-74 282.3 352 46.3
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 5.3e-74 282.3 352 46.3
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 2.7e-73 280.0 352 45.7
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 3.5e-73 279.6 352 45.7
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 1.7e-72 277.3 350 46.3
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 2.2e-72 276.9 349 44.7
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.2e-72 276.9 354 44.9
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 1.4e-69 267.7 353 44.5
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 2.6e-68 263.5 369 43.6
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 4.4e-68 262.7 375 41.9
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 9.8e-68 261.5 415 39.3
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 2.2e-67 260.4 400 42.2
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.4e-66 255.8 391 41.9
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 5.4e-66 255.8 396 40.4
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.6e-65 254.2 398 41.7
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.6e-65 254.2 422 38.9
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.6e-65 254.2 427 41.7
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 3.5e-65 253.1 382 42.1
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 5.9e-65 252.3 347 45.2
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.0e-64 251.5 427 39.3
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 1.3e-64 251.1 432 38.4
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 1.7e-64 250.8 428 39.5
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 1.7e-64 250.8 428 39.0
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.8e-64 249.6 383 39.9
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 5.0e-64 249.2 289 52.9
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 6.5e-64 248.8 453 37.3
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 6.5e-64 248.8 344 44.2
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.5e-63 247.7 440 36.8
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 3.3e-63 246.5 408 38.7
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 4.2e-63 246.1 453 38.2
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 5.5e-63 245.7 460 37.8
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 9.5e-63 245.0 460 37.2
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 1.6e-62 244.2 445 36.6
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 4.7e-62 242.7 390 40.5
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 8.0e-62 241.9 443 35.7
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 1.8e-61 240.7 459 37.5
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 2.3e-61 240.4 421 37.8
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 2.3e-61 240.4 446 37.7
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 4.0e-61 239.6 432 37.0
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 4.0e-61 239.6 447 36.2
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 1.5e-60 237.7 437 36.4
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 5.7e-60 235.7 444 34.7
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 9.8e-60 235.0 313 44.4
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 9.8e-60 235.0 409 37.2
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 9.8e-60 235.0 409 37.2
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.7e-59 234.2 453 37.3
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.2e-59 233.8 371 41.8
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.2e-59 233.8 448 37.3
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 1.1e-58 231.5 474 34.8
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 3.1e-58 229.9 270 47.0
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 3.1e-58 229.9 422 35.8
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.2e-57 228.0 457 36.3
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 1.2e-57 228.0 448 36.8
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 5.9e-57 225.7 431 36.0
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 5.9e-57 225.7 275 46.5
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 7.8e-57 225.3 380 40.5
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.0e-56 224.9 317 44.2
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 3.8e-56 223.0 423 36.4
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 3.8e-56 223.0 440 36.6
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 5.0e-56 222.6 461 33.0
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 6.6e-56 222.2 488 34.0
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.9e-55 220.7 278 46.4
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 2.5e-55 220.3 361 39.3
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 2.1e-54 217.2 372 39.0
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 4.7e-54 216.1 474 35.0
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 6.1e-54 215.7 446 33.0
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.0e-53 214.9 447 36.0
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 1.8e-53 214.2 310 44.2
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 8.9e-53 211.8 442 34.2
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 8.9e-53 211.8 323 42.4
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 1.2e-52 211.5 370 40.5
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 5.8e-52 209.1 290 43.8
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.9e-51 206.8 292 44.2
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 3.7e-51 206.5 461 35.8
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 4.9e-51 206.1 474 33.3
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 6.4e-51 205.7 327 39.8
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.1e-50 204.9 343 38.8
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.1e-50 204.9 472 33.9
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.2e-50 203.4 453 33.1
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.2e-49 201.4 424 35.8
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.8e-49 198.7 244 45.9
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 7.8e-49 198.7 291 41.6
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 3.3e-47 193.4 291 43.0
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 4.3e-47 193.0 293 41.6
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 5.2e-45 186.0 289 40.5
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 8.9e-45 185.3 454 34.6
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 2.0e-44 184.1 288 42.4
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.4e-44 183.0 385 34.3
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.7e-43 181.0 322 38.2
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 8.3e-43 178.7 293 39.2
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.1e-42 178.3 304 41.4
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.3e-40 171.4 301 37.9
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 8.6e-40 168.7 316 37.3
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.1e-39 168.3 276 39.5
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 1.6e-38 164.5 223 44.4
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 5.8e-36 156.0 389 30.3
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 1.9e-34 151.0 407 32.2
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 1.2e-33 148.3 231 44.2
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 1.2e-33 148.3 231 44.2
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.6e-33 147.9 160 46.2
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 1.7e-32 144.4 208 43.3
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 1.2e-30 138.3 223 40.8
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 5.2e-29 132.9 157 45.2
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 8.9e-29 132.1 344 30.2
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 7.6e-28 129.0 306 36.3
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 3.8e-27 126.7 147 43.5
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 8.4e-27 125.6 148 51.4
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 1.1e-26 125.2 210 39.0
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.1e-26 125.2 196 38.8
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 2.4e-26 124.0 148 50.7
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 4.2e-26 123.2 158 44.9
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 4.2e-26 123.2 92 58.7
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 6.6e-24 115.9 141 50.4
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.5e-23 114.8 142 45.1
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 4.3e-23 113.2 203 35.5
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.1e-21 108.6 142 45.1
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 4.4e-20 103.2 126 45.2
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 7.1e-18 95.9 180 36.7
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 3.0e-16 90.5 146 38.4
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 4.5e-12 76.6 207 31.9
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 2.2e-11 74.3 114 35.1
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 2.4e-10 70.9 103 39.8
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.6e-09 68.2 111 40.5
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.1e-09 67.8 125 37.6
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 6.0e-09 66.2 58 58.6


User provided reference genes

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