Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2919 Fragaria x ananassa HOM05D006694 ORTHO05D008240 2.4e-91 340.9 171 100.0
FvH4_3g35120 Fragaria vesca HOM05D006694 ORTHO05D008240 3.5e-90 337.0 171 97.7
FAN21G3540 Fragaria x ananassa HOM05D006694 ORTHO05D008240 9.4e-88 328.9 171 97.1
FAN11G2736 Fragaria x ananassa HOM05D006694 ORTHO05D008240 3.3e-85 320.5 161 97.5
RcHm_v2.0_Chr5g0048941 Rosa chinensis HOM05D006694 ORTHO05D008240 1.1e-75 288.9 168 87.5
FAN08G0107 Fragaria x ananassa HOM05D006694 ORTHO05D008240 8.8e-70 269.2 167 79.0
FAN18G4320 Fragaria x ananassa HOM05D006694 ORTHO05D008240 2.4e-67 261.2 168 78.0
FvH4_5g33200 Fragaria vesca HOM05D006694 ORTHO05D008240 5.4e-67 260.0 167 77.8
MD08G1215500 Malus domestica HOM05D006694 ORTHO05D008240 5.4e-51 206.8 159 65.4
CiPaw.14G112300 Carya illinoinensis HOM05D006694 ORTHO05D008240 3.2e-43 181.0 159 57.9
QL01p017030 Quercus lobata HOM05D006694 ORTHO05D008240 4.0e-38 164.1 156 52.6
TWI79G1258 Tripterygium wilfordii HOM05D006694 ORTHO05D008240 1.9e-32 145.2 161 44.7
CSS0033907 Camellia sinensis var. sinensis HOM05D006694 ORTHO05D008240 2.5e-32 144.8 159 45.9
RcHm_v2.0_Chr7g0231581 Rosa chinensis HOM05D006694 ORTHO05D008240 3.6e-31 141.0 88 79.5
Sc16g0011010 Simmondsia chinensis HOM05D006694 ORTHO05D008240 8.1e-31 139.8 166 44.6
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 1.4e-30 139.0 137 53.3
Haze_23236 Corylus avellana HOM05D006694 ORTHO05D008240 1.8e-30 138.7 144 50.0
Lalb_Chr10g0096081 Lupinus albus HOM05D006694 ORTHO05D008240 8.9e-30 136.3 160 45.0
Hma1.2p1_1099F.1_g256830 Hydrangea macrophylla HOM05D006694 ORTHO05D008240 1.5e-29 135.6 148 46.6
PGSC0003DMG400022317 Solanum tuberosum HOM05D006694 ORTHO05D008240 3.2e-27 127.9 148 45.3
TAR633G1767 Trochodendron aralioides HOM05D006694 ORTHO05D008240 3.2e-27 127.9 148 41.2
LjContig00485g0019324 Lotus japonicus HOM05D006694 ORTHO05D008240 5.4e-27 127.1 162 45.7
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 9.2e-27 126.3 172 40.7
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 3.5e-26 124.4 149 43.6
Nitab4.5_0000730g0020 Nicotiana tabacum HOM05D006694 ORTHO05D008240 3.5e-26 124.4 144 40.3
Ca_20213_v3 Cicer arietinum L. HOM05D006694 ORTHO05D008240 4.6e-26 124.0 139 48.2
Solyc07g064625.1 Solanum lycopersicum HOM05D006694 ORTHO05D008240 4.6e-26 124.0 148 43.2
Cfa011326 Carpinus fangiana HOM05D006694 ORTHO05D008240 6.0e-26 123.6 158 42.4
Sopen07g032820 Solanum pennellii HOM05D006694 ORTHO05D008240 6.0e-26 123.6 148 43.9
Medtr7g067460 Medicago truncatula HOM05D006694 ORTHO05D008240 1.7e-25 122.1 164 42.1
ClCG03G012530 Citrullus lanatus HOM05D006694 ORTHO05D008240 2.3e-25 121.7 167 40.1
Nitab4.5_0001500g0030 Nicotiana tabacum HOM05D006694 ORTHO05D008240 3.0e-25 121.3 144 39.6
PGR031G0070 Punica granatum HOM05D006694 ORTHO05D008240 3.0e-25 121.3 169 44.4
Oeu043278.1 Olea europaea HOM05D006694 ORTHO05D008240 5.1e-25 120.6 171 39.8
Prupe.1G547200 Prunus persica HOM05D006694 ORTHO05D008240 5.1e-25 120.6 83 72.3
MD15G1400000 Malus domestica HOM05D006694 ORTHO05D008240 2.5e-24 118.2 86 66.3
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 4.3e-24 117.5 136 47.8
Psat3g130440 Pisum sativum HOM05D006694 ORTHO05D008240 4.3e-24 117.5 137 44.5
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 4.3e-24 117.5 130 46.9
Nitab4.5_0003488g0040 Nicotiana tabacum HOM05D006694 ORTHO05D008240 9.6e-24 116.3 145 40.0
THA.LOC104800448 Tarenaya hassleriana HOM05D006694 ORTHO05D008240 1.3e-23 115.9 149 43.6
MELO3C015109.2 Cucumis melo HOM05D006694 ORTHO05D008240 1.6e-23 115.5 166 38.6
CsaV3_1G043500 Cucumis sativus L. HOM05D006694 ORTHO05D008240 2.8e-23 114.8 164 38.4
Aqoxy1G00470 Aquilegia oxysepala HOM05D006694 ORTHO05D008240 4.8e-23 114.0 160 34.4
Glyma.07G147400 Glycine max HOM05D006694 ORTHO05D008240 1.8e-22 112.1 133 42.9
Nn7g35871 Nelumbo nucifera HOM05D006694 ORTHO05D008240 2.4e-22 111.7 147 37.4
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 3.1e-22 111.3 135 44.4
TPR.G8137 Trifolium pratense HOM05D006694 ORTHO05D008240 5.3e-22 110.5 118 44.9
CARHR235710 Cardamine hirsuta HOM05D006694 ORTHO05D008240 9.0e-22 109.8 142 42.3
Thhalv10006947m.g Eutrema salsugineum HOM05D006694 ORTHO05D008240 1.2e-21 109.4 158 41.1
AL7G24620 Arabidopsis lyrata HOM05D006694 ORTHO05D008240 2.6e-21 108.2 140 45.7
SalBow5G3658 Salvia bowleyana HOM05D006694 ORTHO05D008240 3.4e-21 107.8 145 38.6
Aa31LG5G9000 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.4e-21 107.5 148 41.9
Lj1g0001110 Lotus japonicus HOM05D006694 ORTHO05D010126 4.4e-21 107.5 161 43.5
HanXRQChr14g0447481 Helianthus annuus HOM05D006694 ORTHO05D008240 7.6e-21 106.7 141 35.5
Aa31LG5G8930 Aethionema arabicum HOM05D006694 ORTHO05D008240 9.9e-21 106.3 149 40.3
LjContig00485g0005104 Lotus japonicus HOM05D006694 ORTHO05D008240 2.2e-20 105.1 158 41.8
SalBow5G5172 Salvia bowleyana HOM05D006694 ORTHO05D008240 2.9e-20 104.8 145 37.9
AUR62006546 Chenopodium quinoa HOM05D006694 ORTHO05D008240 4.9e-20 104.0 134 40.3
Migut.D00664 Erythranthe guttata HOM05D006694 ORTHO05D008240 1.9e-19 102.1 146 37.0
SalBow6G6606 Salvia bowleyana HOM05D006694 ORTHO05D008240 1.9e-19 102.1 145 36.6
VMungo1383G3557 Vigna mungo HOM05D006694 ORTHO05D008240 4.2e-19 100.9 135 40.7
SalBow6G6418 Salvia bowleyana HOM05D006694 ORTHO05D008240 9.3e-19 99.8 132 38.6
SGA_v2.0_scaffold29G12231 Striga asiatica HOM05D006694 ORTHO05D008240 9.3e-19 99.8 150 34.7
BolC5t29875H Brassica oleracea HOM05D006694 ORTHO05D008240 2.7e-18 98.2 154 40.9
EL10Ac4g10114 Beta vulgaris HOM05D006694 ORTHO05D008240 3.5e-18 97.8 96 49.0
C05p11260 Brassica napus HOM05D006694 ORTHO05D008240 3.5e-18 97.8 154 40.3
Aa31LG8G12540 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.6e-18 97.4 158 37.3
Aa31LG2G18100 Aethionema arabicum HOM05D006694 ORTHO05D008240 6.0e-18 97.1 157 38.9
Sp1g10540 Schrenkiella parvula HOM05D006694 ORTHO05D008240 1.7e-17 95.5 141 40.4
Aa31LG6G11680 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.3e-17 95.1 133 40.6
Aa31LG6G5340 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.3e-17 95.1 133 40.6
Aa31LG10G10300 Aethionema arabicum HOM05D006694 ORTHO05D008240 5.1e-17 94.0 160 38.8
A06p09550 Brassica napus HOM05D006694 ORTHO05D008240 5.1e-17 94.0 154 37.7
BraA06t24145Z Brassica rapa HOM05D006694 ORTHO05D008240 5.1e-17 94.0 154 38.3
Ah.06g194610 Amaranthus hybridus HOM05D006694 ORTHO05D008240 6.6e-17 93.6 101 44.6
Aa31sc233G30 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.3e-16 91.3 157 36.9
Aa31sc233G50 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.3e-16 91.3 160 36.9
ATR0737G153 Amborella trichopoda HOM05D006694 ORTHO05D008240 4.3e-16 90.9 136 37.5
AT4G28010 Arabidopsis thaliana HOM05D006694 ORTHO05D008240 5.6e-16 90.5 134 39.6
Aa31sc233G40 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.1e-15 88.6 157 37.6
Aa31sc233G60 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.1e-15 88.6 157 37.6
Aa31LG6G11690 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.6e-15 87.8 168 36.9
Aa31LG6G5330 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.6e-15 87.8 168 36.9
Cfa009864 Carpinus fangiana HOM05D006694 ORTHO05D008240 4.8e-15 87.4 154 34.4
Aa31LG2G18070 Aethionema arabicum HOM05D006694 ORTHO05D008240 8.1e-15 86.7 162 37.0
Aa31LG2G18090 Aethionema arabicum HOM05D006694 ORTHO05D008240 8.1e-15 86.7 162 37.0
MBI04_g37009_MAGBIO Magnolia biondii HOM05D006694 ORTHO05D008240 8.1e-15 86.7 132 32.6
Dinv15034 Davidia involucrata HOM05D006694 ORTHO05D008240 1.5e-13 82.4 56 67.9
Nitab4.5_0000718g0300 Nicotiana tabacum HOM05D006694 ORTHO05D008240 2.0e-13 82.0 86 43.0
Atru.chr3.2947 Acer truncatum HOM05D006694 ORTHO05D008240 4.5e-13 80.9 89 48.3
Atru.chr3.2963 Acer truncatum HOM05D006694 ORTHO05D008240 4.5e-13 80.9 89 48.3
DCAR_024407 Daucus carota HOM05D006694 ORTHO05D008240 5.8e-13 80.5 94 42.6
MBI11_g34855_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 5.8e-13 80.5 121 35.5
Manes.01G178400 Manihot esculenta HOM05D006694 ORTHO05D008240 7.6e-13 80.1 78 55.1
MD15G1399800 Malus domestica HOM05D006694 ORTHO05D008240 1.3e-12 79.3 56 67.9
Potri.009G069600 Populus trichocarpa HOM05D006694 ORTHO05D008240 1.3e-12 79.3 79 53.2
Sabra09G0052500 Salix brachista HOM05D006694 ORTHO05D008240 2.2e-12 78.6 88 50.0
Carub.0007s1279 Capsella rubella HOM05D006694 ORTHO05D008240 5.4e-11 73.9 109 37.6
ATR0681G086 Amborella trichopoda HOM05D006694 ORTHO05D008240 7.1e-11 73.6 134 32.1
AUR62011921 Chenopodium quinoa HOM05D000162 ORTHO05D000090 7.1e-11 73.6 118 31.4
EL10Ac5g10449 Beta vulgaris HOM05D000162 ORTHO05D000090 3.5e-10 71.2 118 28.8
ATR0737G136 Amborella trichopoda HOM05D006694 ORTHO05D008240 4.6e-10 70.9 106 32.1
Ciclev10014456m.g Citrus clementina HOM05D006694 ORTHO05D008240 1.0e-09 69.7 56 57.1
ECA238G0309 Erigeron canadensis HOM05D006295 ORTHO05D008061 3.0e-09 68.2 78 38.5
HPP92_025503 Vanilla planifolia HOM05D062792 ORTHO05D008240 3.9e-09 67.8 133 26.3
HPP92_025533 Vanilla planifolia HOM05D062792 ORTHO05D008240 3.9e-09 67.8 133 26.3
Sc05g0000860 Simmondsia chinensis HOM05D000162 ORTHO05D000090 2.5e-08 65.1 149 26.8
Oeu010118.1 Olea europaea HOM05D000162 ORTHO05D000090 4.3e-08 64.3 99 29.3
ATR1128G092 Amborella trichopoda HOM05D006694 ORTHO05D008240 7.4e-08 63.5 110 30.9
MSTRG.18464 Avicennia marina HOM05D006694 ORTHO05D008240 7.4e-08 63.5 158 27.2
Aa31LG5G21690 Aethionema arabicum HOM05D006694 ORTHO05D008240 9.6e-08 63.2 137 32.1
TWI75G1134 Tripterygium wilfordii HOM05D000162 ORTHO05D000090 9.6e-08 63.2 128 29.7
Lsat_1_v5_gn_9_9621 Lactuca sativa HOM05D000162 ORTHO05D000090 1.3e-07 62.8 147 25.9
Eucgr.G03208 Eucalyptus grandis HOM05D006694 ORTHO05D008240 1.6e-07 62.4 78 43.6
Rhsim13G0208900 Rhododendron simsii HOM05D006694 ORTHO05D008240 1.6e-07 62.4 49 51.0
A09p62690 Brassica napus HOM05D000162 ORTHO05D000090 2.1e-07 62.0 117 31.6
AUR62032236 Chenopodium quinoa HOM05D000162 ORTHO05D000090 2.8e-07 61.6 87 34.5
FAN24G2639 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.8e-07 61.6 112 31.2
FAN27G0396 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.8e-07 61.6 111 32.4
THA.LOC104809084 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.8e-07 61.6 155 26.5
Lalb_Chr05g0220111 Lupinus albus HOM05D000162 ORTHO05D000090 3.7e-07 61.2 115 27.0
arahy.Tifrunner.gnm1.ann1.5GFX18 Arachis hypogaea HOM05D000162 ORTHO05D000090 6.2e-07 60.5 141 27.0
Nn3g18307 Nelumbo nucifera HOM05D000162 ORTHO05D000090 6.2e-07 60.5 115 27.0
Migut.N00243 Erythranthe guttata HOM05D000162 ORTHO05D000090 8.1e-07 60.1 118 25.4
FAN11G1276 Fragaria x ananassa HOM05D000162 ORTHO05D000090 8.1e-07 60.1 159 25.8
RcHm_v2.0_Chr5g0061091 Rosa chinensis HOM05D000162 ORTHO05D000090 8.1e-07 60.1 118 29.7
THA.LOC104809083 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 8.1e-07 60.1 151 26.5
GSVIVG01037290001 Vitis vinifera HOM05D006694 ORTHO05D008240 8.1e-07 60.1 46 56.5
FvH4_2g22260 Fragaria vesca HOM05D000162 ORTHO05D000090 1.1e-06 59.7 110 31.8
Thhalv10020547m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.8e-06 58.9 114 29.8
Ciclev10024138m.g Citrus clementina HOM05D000162 ORTHO05D000090 2.4e-06 58.5 165 24.2
Aa31sc233G10 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.1e-06 58.2 141 31.2
Duzib084G1098 Durio zibethinus HOM05D007383 ORTHO05D009254 3.1e-06 58.2 166 28.3
QL03p008266 Quercus lobata HOM05D000162 ORTHO05D000090 3.1e-06 58.2 133 25.6
QL05p070010 Quercus lobata HOM05D000162 ORTHO05D000090 3.1e-06 58.2 133 25.6
SalBow3G4074 Salvia bowleyana HOM05D000162 ORTHO05D000090 4.0e-06 57.8 133 24.8
Psat3g112240 Pisum sativum HOM05D000162 ORTHO05D000090 5.3e-06 57.4 106 31.1
GSVIVG01000757001 Vitis vinifera HOM05D000162 ORTHO05D000090 5.3e-06 57.4 106 30.2


User provided reference genes

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