Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 2.1e-74 282.3 146 100.0
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.1e-74 282.3 146 100.0
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 4.6e-74 281.2 146 99.3
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 6.0e-74 280.8 145 99.3
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 7.8e-74 280.4 146 99.3
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 7.3e-64 247.3 144 88.9
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 8.1e-63 243.8 144 86.1
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 8.1e-63 243.8 144 86.1
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 8.1e-63 243.8 144 90.3
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 5.3e-62 241.1 144 86.8
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 5.3e-62 241.1 144 84.7
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 4.5e-61 238.0 144 85.4
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 7.6e-61 237.3 143 84.6
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 9.9e-61 236.9 143 83.9
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 1.3e-60 236.5 144 84.7
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 1.3e-60 236.5 145 84.8
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 1.7e-60 236.1 144 84.7
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 1.7e-60 236.1 144 84.7
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 2.2e-60 235.7 144 84.0
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 4.9e-60 234.6 144 83.3
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 4.9e-60 234.6 144 84.7
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 4.9e-60 234.6 144 82.6
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 6.4e-60 234.2 144 84.7
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 8.4e-60 233.8 145 84.1
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 1.9e-59 232.6 144 84.7
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 2.4e-59 232.3 143 84.6
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.2e-59 231.9 145 82.8
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.2e-59 231.9 145 82.8
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 5.4e-59 231.1 143 83.9
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 5.4e-59 231.1 144 81.2
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 7.1e-59 230.7 144 83.3
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 7.1e-59 230.7 144 83.3
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 7.1e-59 230.7 144 83.3
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 7.1e-59 230.7 145 84.1
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 7.1e-59 230.7 144 84.0
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 9.3e-59 230.3 145 83.4
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.2e-58 229.9 144 79.9
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.1e-58 229.2 144 81.2
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.7e-58 228.8 144 79.9
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 2.7e-58 228.8 144 79.9
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 6.0e-58 227.6 144 82.6
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 6.0e-58 227.6 144 81.9
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 7.9e-58 227.3 144 83.3
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 7.9e-58 227.3 143 81.8
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 1.0e-57 226.9 144 81.9
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.9e-57 224.9 145 82.1
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 3.9e-57 224.9 145 82.1
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 5.1e-57 224.6 147 78.9
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 5.1e-57 224.6 144 79.9
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 6.7e-57 224.2 145 83.4
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 8.7e-57 223.8 145 82.1
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 8.7e-57 223.8 144 78.5
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.5e-56 223.0 145 81.4
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 1.9e-56 222.6 144 78.5
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 2.5e-56 222.2 144 78.5
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 2.5e-56 222.2 139 84.9
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 5.6e-56 221.1 144 81.9
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 9.6e-56 220.3 147 79.6
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 9.6e-56 220.3 144 81.2
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 9.6e-56 220.3 145 81.4
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 2.8e-55 218.8 144 78.5
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.8e-55 218.8 144 78.5
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 4.8e-55 218.0 144 77.1
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 4.8e-55 218.0 144 77.1
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 8.1e-55 217.2 153 79.1
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 1.1e-54 216.9 144 79.2
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 1.1e-54 216.9 143 76.2
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 1.4e-54 216.5 145 75.9
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 1.4e-54 216.5 144 79.9
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 2.4e-54 215.7 144 78.5
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 4.0e-54 214.9 145 77.9
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 9.0e-54 213.8 145 77.2
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 1.5e-53 213.0 144 77.1
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 1.5e-53 213.0 144 77.8
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 2.0e-53 212.6 144 79.2
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 7.6e-53 210.7 147 75.5
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 9.9e-53 210.3 143 76.9
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 9.9e-53 210.3 144 76.4
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 9.9e-53 210.3 146 76.0
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.9e-52 208.8 148 75.0
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.9e-52 208.8 148 75.0
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 3.8e-52 208.4 148 75.7
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 8.4e-52 207.2 137 78.8
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 1.1e-51 206.8 144 77.1
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.9e-51 206.1 152 77.0
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 3.2e-51 205.3 147 72.8
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 5.5e-51 204.5 144 75.0
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 5.5e-51 204.5 145 74.5
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 7.9e-50 200.7 146 71.2
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 1.0e-49 200.3 149 73.2
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.3e-49 199.1 142 75.4
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 3.0e-49 198.7 154 70.1
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.9e-49 198.4 142 75.4
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 6.7e-49 197.6 142 74.6
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 6.7e-49 197.6 150 71.3
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.1e-48 196.8 150 74.7
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 1.5e-48 196.4 150 70.7
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 1.5e-48 196.4 149 71.8
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 3.3e-48 195.3 151 70.9
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.3e-47 193.4 151 68.9
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 1.6e-47 193.0 100 99.0
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 3.7e-47 191.8 151 68.2
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 3.7e-47 191.8 152 69.7
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 2.0e-45 186.0 149 67.1
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 2.6e-45 185.7 115 81.7
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 2.5e-43 179.1 146 67.1
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 2.5e-43 179.1 146 67.1
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 2.1e-42 176.0 150 65.3
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 1.1e-40 170.2 159 59.7
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 7.4e-40 167.5 109 80.7
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 7.4e-40 167.5 109 80.7
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 7.4e-40 167.5 144 66.7
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 2.8e-39 165.6 147 64.6
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 4.8e-39 164.9 143 63.6
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.1e-38 163.7 139 66.9
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.1e-38 163.7 105 80.0
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 1.4e-35 153.3 134 64.2
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 3.2e-35 152.1 134 62.7
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 2.7e-34 149.1 135 63.0
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 3.4e-29 132.1 86 80.2
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 2.2e-28 129.4 133 54.9
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 2.9e-28 129.0 92 71.7
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 2.9e-28 129.0 92 71.7
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 3.8e-28 128.6 84 77.4
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 6.5e-28 127.9 128 54.7
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 6.5e-28 127.9 128 53.9
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 2.4e-22 109.4 163 45.4
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 7.0e-22 107.8 78 70.5
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 2.9e-20 102.4 79 60.8
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 3.8e-20 102.1 88 62.5
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.4e-19 100.1 79 62.0
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 7.2e-19 97.8 71 67.6
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 7.2e-19 97.8 71 67.6
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 7.2e-19 97.8 144 46.5
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 4.7e-18 95.1 129 41.9
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 5.2e-17 91.7 69 59.4
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 6.7e-17 91.3 71 63.4
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 8.8e-17 90.9 69 65.2
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.5e-16 90.1 69 65.2
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.0e-16 89.7 69 63.8
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 9.7e-16 87.4 145 41.4
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 9.1e-14 80.9 72 56.9
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 5.9e-13 78.2 72 55.6
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 5.0e-12 75.1 70 54.3
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 1.2e-10 70.5 122 42.6
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 1.4e-09 67.0 83 45.8
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 5.7e-08 61.6 51 64.7
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 1.3e-07 60.5 72 41.7
Solyc09g082740.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 4.8e-07 58.5 96 37.5
Sopen09g031600 Solanum pennellii HOM05D005136 ORTHO05D024799 6.3e-07 58.2 98 37.8
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.8e-06 56.6 72 38.9


User provided reference genes

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