Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 2333.5 1184 100.0
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 2288.8 1192 97.7
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 2260.7 1193 96.4
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 0.0e+00 2234.9 1194 95.6
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 2207.2 1192 95.0
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 0.0e+00 2136.3 1193 91.0
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 0.0e+00 1931.8 1204 81.5
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 0.0e+00 1864.4 1199 80.1
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 0.0e+00 1664.0 1198 70.5
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 0.0e+00 1657.5 1203 70.5
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 0.0e+00 1645.2 1204 69.9
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 0.0e+00 1634.4 1200 69.0
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 0.0e+00 1610.9 1207 68.4
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 0.0e+00 1583.2 1200 65.9
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 0.0e+00 1567.0 1196 66.1
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 0.0e+00 1556.2 1200 66.6
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1554.7 1184 66.8
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 0.0e+00 1552.7 1200 66.9
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 0.0e+00 1548.5 1200 65.7
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 0.0e+00 1547.7 1201 65.8
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1542.7 1201 65.6
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1541.2 1194 65.7
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 0.0e+00 1536.5 1201 65.0
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 0.0e+00 1533.9 1199 64.9
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1532.3 1183 65.3
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 0.0e+00 1521.9 1200 65.6
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 0.0e+00 1515.0 1203 62.5
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 0.0e+00 1507.7 1202 63.6
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 0.0e+00 1505.7 1192 63.3
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1503.0 1204 62.6
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 0.0e+00 1503.0 1202 62.6
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 0.0e+00 1501.9 1219 61.5
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 0.0e+00 1500.0 1209 61.3
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 0.0e+00 1499.6 1105 69.2
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1499.2 1201 61.7
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 0.0e+00 1498.8 1202 63.2
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 0.0e+00 1495.7 1202 63.2
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1494.6 1200 62.2
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 0.0e+00 1489.6 1200 62.3
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 0.0e+00 1486.9 1199 62.7
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 0.0e+00 1482.6 1192 62.8
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 0.0e+00 1481.8 1196 63.0
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 0.0e+00 1480.3 1197 61.5
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 0.0e+00 1479.5 1202 62.1
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 0.0e+00 1478.8 1202 63.0
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1476.1 1200 62.6
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 0.0e+00 1475.7 1200 62.5
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1474.9 1200 62.6
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 0.0e+00 1470.3 1206 63.3
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 0.0e+00 1464.5 1081 68.7
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 0.0e+00 1461.4 1189 63.2
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 0.0e+00 1461.4 1215 61.8
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1459.5 1199 61.9
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 0.0e+00 1455.3 1195 61.3
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1448.7 1200 60.2
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 0.0e+00 1448.0 1214 61.4
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1437.6 1200 59.9
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1437.2 1186 60.7
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 0.0e+00 1436.4 1201 61.4
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 0.0e+00 1433.3 1200 61.6
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 0.0e+00 1429.1 1041 68.1
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 0.0e+00 1421.8 1192 61.0
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1419.8 1198 59.7
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 0.0e+00 1418.3 1193 60.9
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 0.0e+00 1416.0 1194 61.5
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 0.0e+00 1412.9 1205 60.3
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 0.0e+00 1407.1 1193 61.4
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 0.0e+00 1404.4 1193 60.9
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 0.0e+00 1395.6 1200 60.3
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 0.0e+00 1391.7 1198 60.4
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1387.9 1198 58.8
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 0.0e+00 1387.5 1201 60.1
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 0.0e+00 1384.4 1198 60.1
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 0.0e+00 1383.2 1185 59.7
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 0.0e+00 1375.9 1197 59.8
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 0.0e+00 1363.2 1323 54.0
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 0.0e+00 1361.7 1218 57.3
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 0.0e+00 1343.6 1194 58.1
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 0.0e+00 1332.8 1192 57.4
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1325.1 1039 65.8
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 0.0e+00 1322.8 1199 57.7
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 0.0e+00 1308.5 1070 63.2
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 0.0e+00 1295.4 1198 56.0
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 0.0e+00 1289.6 1189 57.0
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1287.7 1066 61.4
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 0.0e+00 1278.8 1182 56.6
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 0.0e+00 1272.7 1191 55.2
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1266.5 1052 60.7
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 0.0e+00 1246.5 1183 54.3
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 0.0e+00 1241.9 1184 55.2
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 0.0e+00 1238.4 1216 53.4
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 0.0e+00 1232.2 1199 55.9
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 0.0e+00 1083.9 1227 47.4
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 0.0e+00 1076.2 1057 55.0
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 1.3e-291 1006.9 774 66.4
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 1.1e-274 950.7 520 93.5
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 2.8e-254 882.9 1215 41.4
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 2.9e-243 846.3 704 63.2
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 5.5e-242 842.0 843 55.8
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 1.2e-241 840.9 751 59.4
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 4.6e-241 839.0 1207 39.7
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 3.2e-234 816.2 1207 39.9
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 2.6e-228 796.6 739 56.3
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 1.8e-213 747.3 717 54.0
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 6.7e-208 728.8 704 54.0
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 1.3e-182 644.8 796 46.5
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 1.4e-168 598.2 780 43.1
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 2.4e-165 587.4 455 63.3
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 6.9e-152 542.7 441 61.7
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 2.0e-143 514.6 1367 28.2
Cpa.g.sc6.347 Carica papaya HOM05D005976 ORTHO05D007149 7.1e-125 453.0 456 54.6
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 5.3e-120 436.8 452 52.2
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 4.1e-112 410.6 408 52.5
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 5.1e-107 393.7 683 35.0
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 3.3e-90 337.8 360 48.9
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 3.7e-73 281.2 279 53.4
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 7.3e-61 240.4 1279 23.6
arahy.Tifrunner.gnm1.ann1.SH4Y7X Arachis hypogaea HOM05D005976 ORTHO05D007149 1.9e-56 225.7 360 39.4
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 5.4e-56 224.2 226 53.5
Manes.07G108212 Manihot esculenta HOM05D005976 ORTHO05D007149 4.3e-37 161.4 175 53.1
Hma1.2p1_0085F.1_g044360 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 9.6e-37 160.2 118 64.4
Hund03583 Selenicereus undatus HOM05D005976 ORTHO05D007149 1.1e-35 156.8 118 61.9
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 1.0e-30 140.2 358 30.2
Oeu041882.1 Olea europaea HOM05D005976 ORTHO05D007149 2.2e-25 122.5 138 50.0
PRCOL_00004193 Prasinoderma coloniale HOM05D005976 ORTHO05D007149 4.9e-25 121.3 1175 20.6


User provided reference genes

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