Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 0.0e+00 2461.8 1271 100.0
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 0.0e+00 2312.7 1307 93.0
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 0.0e+00 2278.8 1273 94.1
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 0.0e+00 2267.3 1307 91.8
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 0.0e+00 1910.6 1294 79.3
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 0.0e+00 1414.4 1294 60.3
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 0.0e+00 1344.3 1432 54.2
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 2.7e-295 1019.2 1317 47.1
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 2.7e-295 1019.2 1324 46.7
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 3.6e-284 982.2 1329 46.3
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 1.1e-251 874.4 1310 43.4
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 3.8e-249 865.9 1323 41.4
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 5.7e-245 852.0 1319 42.6
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 6.9e-243 845.1 1320 42.4
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 3.4e-242 842.8 1318 42.5
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 3.8e-241 839.3 1281 43.8
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.2e-239 834.3 1297 41.7
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 8.2e-236 821.6 1296 41.0
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 1.8e-219 767.3 1371 38.5
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 1.1e-211 741.5 1261 39.7
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 1.2e-205 721.5 1401 36.5
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 3.4e-197 693.3 1243 38.9
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 1.1e-192 678.3 1353 36.1
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 4.3e-192 676.4 1306 36.4
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 2.8e-191 673.7 1273 38.5
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 6.4e-188 662.5 1473 35.3
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 9.9e-181 638.6 1309 36.7
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 6.4e-180 636.0 1341 33.9
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 4.6e-178 629.8 1308 34.9
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 6.6e-177 625.9 1268 36.3
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 3.6e-175 620.2 1342 33.9
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 8.1e-175 619.0 1350 35.1
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 1.8e-174 617.8 1279 35.8
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 5.8e-173 612.8 1316 35.4
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 9.9e-173 612.1 1346 34.5
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 3.2e-171 607.1 1317 34.0
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 9.2e-171 605.5 1308 35.0
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 1.7e-169 601.3 1360 34.2
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 1.6e-167 594.7 1329 34.2
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 1.6e-167 594.7 1318 34.8
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.1e-167 594.3 1598 32.2
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 1.8e-166 591.3 1225 36.4
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 9.0e-166 589.0 1419 33.0
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 2.9e-164 583.9 1343 34.9
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 2.4e-163 580.9 1317 34.0
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 2.1e-162 577.8 1510 32.0
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 1.5e-160 571.6 1396 32.7
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 3.3e-160 570.5 1320 32.7
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 1.3e-159 568.5 1302 34.3
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 1.3e-159 568.5 1295 33.7
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 1.6e-159 568.2 1328 34.5
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 1.1e-158 565.5 1301 33.8
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 1.4e-158 565.1 1376 33.2
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 2.6e-157 560.8 1313 32.6
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 4.5e-157 560.1 1362 33.5
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 4.5e-157 560.1 1362 33.5
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 2.9e-156 557.4 1273 34.0
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 1.1e-155 555.4 1380 32.7
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 9.3e-155 552.4 1316 33.7
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 4.6e-154 550.1 1383 33.0
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 1.0e-153 548.9 1281 33.4
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 1.5e-152 545.0 1299 32.6
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 2.5e-152 544.3 1405 32.8
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 5.6e-152 543.1 1393 32.4
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 1.6e-151 541.6 1410 32.2
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 2.8e-151 540.8 1354 32.9
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.5e-149 535.0 925 40.1
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 2.2e-148 531.2 1304 33.0
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 4.2e-147 526.9 1294 33.0
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 6.9e-142 509.6 973 38.3
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 9.0e-142 509.2 1302 31.7
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 2.2e-140 504.6 1273 30.8
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 4.6e-138 496.9 1284 31.1
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 3.9e-137 493.8 1559 28.9
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 1.4e-131 475.3 1243 33.0
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 1.9e-131 474.9 1113 33.5
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 1.3e-127 462.2 1632 26.5
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 2.2e-127 461.5 1082 33.6
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 1.0e-124 452.6 1639 27.2
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 5.0e-124 450.3 1301 29.7
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 2.5e-123 448.0 1313 30.0
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 5.5e-123 446.8 870 37.8
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 9.1e-118 429.5 1282 30.7
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 2.6e-117 427.9 1326 29.9
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 5.7e-112 410.2 1546 26.1
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 1.1e-110 406.0 1351 28.1
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 2.7e-106 391.3 545 42.2
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 6.7e-105 386.7 974 33.4
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 6.7e-105 386.7 974 33.4
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 5.7e-104 383.6 1430 28.5
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 2.4e-102 378.3 683 39.8
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 1.3e-100 372.5 1303 28.0
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 2.2e-100 371.7 1297 28.5
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 1.1e-99 369.4 1304 28.4
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 6.8e-97 360.1 1265 27.8
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.4e-94 352.4 1268 27.6
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 3.8e-92 344.4 1347 27.2
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 6.3e-87 327.0 511 42.1
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 8.6e-84 316.6 373 49.1
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 1.6e-82 312.4 276 56.5
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.0e-81 309.7 280 53.9
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 3.3e-75 288.1 404 40.6
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 2.9e-71 275.0 465 38.9
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.7e-71 274.6 289 54.7
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 2.1e-66 258.8 482 38.8
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 1.1e-65 256.5 1287 24.0
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.7e-60 239.2 226 57.1
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 6.6e-60 237.3 200 62.5
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 2.0e-56 225.7 403 34.2
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 4.6e-45 188.0 108 78.7
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 8.7e-44 183.7 119 72.3
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 2.0e-40 172.6 218 43.1
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 5.4e-38 164.5 111 66.7
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 9.3e-38 163.7 136 58.1
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 5.3e-33 147.9 151 51.0
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 3.5e-29 135.2 195 40.0
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 6.0e-29 134.4 90 68.9
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 3.3e-27 128.6 82 67.1
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.6e-24 119.0 176 43.8
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.3e-23 116.7 76 68.4
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 3.8e-23 115.2 221 34.8
AagrBONN_evm.TU.Sc2ySwM_362.1676 Anthoceros agrestis HOM05D004942 ORTHO05D005687 1.4e-22 113.2 411 25.1
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.6e-21 109.8 70 71.4
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 2.5e-19 102.4 82 63.4
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.5e-19 102.4 69 68.1
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 4.3e-19 101.7 249 35.7
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 5.7e-19 101.3 81 60.5
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 9.7e-19 100.5 99 54.5
FvH4_7g33791 Fragaria vesca HOM05D004942 ORTHO05D005687 3.6e-13 82.0 56 76.8
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 2.3e-12 79.3 147 31.3
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 5.1e-12 78.2 128 35.2
Actinidia27213 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.3e-10 73.6 162 33.3
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 2.2e-10 72.8 125 36.0
CBR_g26527 Chara braunii HOM05D001007 ORTHO05D008005 3.1e-09 68.9 122 32.8
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 3.1e-09 68.9 73 45.2
Aqoxy2G01048 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 1.3e-07 63.5 205 29.8
Sed0026193 Sechium edule HOM05D000590 ORTHO05D005739 3.8e-07 62.0 136 33.1


User provided reference genes

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