Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.0e-252 876.3 460 100.0
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 7.5e-248 860.1 460 97.2
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 3.2e-246 854.7 474 96.0
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.9e-239 830.9 449 97.3
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.0e-236 821.6 450 96.2
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.5e-235 819.3 449 94.9
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 1.5e-224 782.7 438 93.6
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 4.4e-171 605.1 474 68.8
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 8.0e-165 584.3 446 70.2
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.0e-156 557.4 475 65.1
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 2.0e-155 553.1 471 64.1
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 3.7e-154 548.9 471 64.1
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.4e-153 546.2 476 63.9
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.1e-153 545.4 471 63.7
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.0e-152 543.1 459 62.3
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 5.9e-152 541.6 471 63.1
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 6.6e-151 538.1 474 62.7
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 1.1e-150 537.3 399 71.7
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 2.5e-150 536.2 468 61.1
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 2.5e-150 536.2 468 61.1
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.2e-149 533.9 473 61.7
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.4e-148 530.4 467 61.0
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 5.2e-148 528.5 474 61.6
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 6.8e-148 528.1 478 61.3
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.2e-147 527.3 473 60.7
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 2.0e-147 526.6 475 60.4
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 2.9e-146 522.7 470 62.1
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.7e-146 522.3 432 64.6
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 8.3e-146 521.2 494 59.3
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 9.2e-145 517.7 469 61.4
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 3.0e-143 512.7 472 60.6
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 6.6e-143 511.5 476 60.1
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 2.5e-142 509.6 438 64.6
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 4.3e-142 508.8 472 59.7
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 2.1e-141 506.5 474 60.1
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.8e-141 506.1 427 64.4
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 6.2e-141 505.0 477 57.9
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 8.0e-141 504.6 484 58.1
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 1.8e-140 503.4 473 59.2
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 2.3e-140 503.1 474 59.5
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 6.8e-140 501.5 469 58.8
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 8.9e-140 501.1 447 59.5
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 2.6e-139 499.6 469 59.7
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 1.3e-138 497.3 442 61.5
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 4.9e-138 495.4 467 57.0
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 6.4e-138 495.0 475 59.8
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.4e-137 493.8 468 58.5
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.9e-137 493.4 423 61.5
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 2.4e-137 493.0 468 57.1
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 4.1e-137 492.3 483 57.8
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.1e-137 492.3 439 61.3
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 7.0e-137 491.5 483 55.7
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 7.0e-137 491.5 429 61.8
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 4.6e-136 488.8 467 56.7
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 7.8e-136 488.0 442 60.2
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 1.0e-135 487.6 436 60.8
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 1.3e-135 487.3 453 59.2
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 6.6e-135 485.0 425 60.9
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 4.3e-134 482.3 362 68.2
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 2.1e-133 479.9 431 59.9
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 2.8e-133 479.6 346 70.5
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 8.1e-133 478.0 446 59.6
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.4e-132 477.2 440 59.5
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.4e-132 477.2 441 61.0
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.3e-132 476.5 471 56.5
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 3.1e-132 476.1 480 56.0
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 4.0e-132 475.7 473 55.0
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.8e-132 474.9 438 59.6
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.2e-131 474.2 438 58.0
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.0e-131 473.4 438 59.4
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 3.4e-131 472.6 432 58.8
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 7.5e-131 471.5 468 55.6
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 2.2e-130 469.9 508 55.7
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 6.4e-130 468.4 473 55.6
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 8.3e-130 468.0 477 54.9
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.1e-129 467.6 450 57.6
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.4e-129 467.2 428 59.3
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 2.4e-129 466.5 412 59.0
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 3.2e-129 466.1 502 52.4
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 2.1e-128 463.4 514 52.5
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 2.7e-128 463.0 395 62.0
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 4.6e-128 462.2 472 55.3
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 3.0e-127 459.5 475 54.5
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.5e-126 457.2 484 53.5
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 1.9e-126 456.8 431 57.3
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 3.3e-126 456.1 401 58.6
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.3e-126 455.7 461 56.0
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 2.8e-125 453.0 393 64.4
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 8.1e-125 451.4 338 68.9
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 1.8e-124 450.3 486 54.9
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.8e-124 450.3 414 58.5
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.3e-124 449.9 474 54.0
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 5.8e-123 445.3 420 57.6
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.7e-122 443.7 478 53.3
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 2.9e-122 443.0 487 52.0
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 6.4e-122 441.8 478 53.3
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.1e-121 441.0 367 63.5
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 2.7e-120 436.4 457 53.8
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 4.6e-120 435.6 442 54.3
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 6.0e-120 435.3 506 52.4
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 1.7e-119 433.7 438 54.3
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.5e-118 430.6 442 54.5
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 1.8e-116 423.7 459 54.0
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 3.1e-116 422.9 443 54.4
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 3.1e-116 422.9 443 54.4
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 3.1e-116 422.9 385 57.9
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.5e-115 420.6 478 50.6
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 2.6e-115 419.9 442 56.3
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 4.4e-115 419.1 472 51.5
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 9.9e-115 417.9 393 61.1
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 2.9e-114 416.4 472 51.3
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.4e-113 414.1 490 51.4
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.9e-113 413.7 442 51.6
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 4.2e-113 412.5 439 52.8
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 9.3e-113 411.4 356 60.4
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 1.3e-111 407.5 440 53.0
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.1e-110 404.4 463 49.5
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 1.5e-110 404.1 344 63.4
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 2.5e-110 403.3 489 50.5
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 8.1e-109 398.3 398 55.0
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 2.0e-107 393.7 402 53.5
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 9.3e-105 384.8 428 50.2
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 1.6e-104 384.0 447 47.0
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.5e-104 382.9 264 73.1
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 7.9e-104 381.7 539 43.6
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 2.1e-101 373.6 311 62.4
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 3.7e-101 372.9 479 48.0
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 8.1e-101 371.7 326 57.1
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 8.1e-101 371.7 473 48.8
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 2.4e-100 370.2 277 68.2
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.0e-99 367.1 382 52.9
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 1.9e-97 360.5 437 48.7
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.5e-94 350.9 466 43.6
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 9.6e-94 348.2 316 58.2
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 6.5e-90 335.5 372 51.9
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 9.3e-89 331.6 453 44.2
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 6.0e-88 328.9 476 43.5
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.3e-87 327.8 426 45.1
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 5.1e-87 325.9 426 45.1
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 5.7e-86 322.4 421 45.4
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 3.7e-85 319.7 338 49.1
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 4.8e-85 319.3 345 49.0
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 3.2e-81 306.6 371 49.9
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 2.3e-79 300.4 451 42.1
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 3.0e-79 300.1 393 43.5
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 3.9e-79 299.7 393 43.5
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 2.2e-77 293.9 299 58.5
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 1.8e-76 290.8 376 43.9
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 5.9e-75 285.8 375 44.5
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 1.5e-70 271.2 207 67.1
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 8.0e-56 222.2 490 34.1
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 1.8e-55 221.1 169 68.0
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 3.0e-55 220.3 168 67.9
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 5.5e-49 199.5 200 53.0
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.4e-47 194.9 152 63.2
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 3.4e-46 190.3 125 70.4
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.4e-36 156.4 94 77.7
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 2.0e-35 154.5 166 50.6
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 2.3e-34 151.0 141 58.2
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 4.6e-27 126.7 142 46.5
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 4.6e-27 126.7 145 49.7
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 6.6e-26 122.9 131 51.9
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.0e-23 113.6 84 64.3
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 5.2e-23 113.2 98 54.1
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 2.0e-22 111.3 94 57.4
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 3.4e-22 110.5 94 55.3
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 1.3e-21 108.6 101 53.5
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 4.1e-20 103.6 166 39.2
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 2.6e-14 84.3 99 49.5
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 2.2e-13 81.3 174 39.1
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 3.5e-11 73.9 227 27.3
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 4.6e-11 73.6 69 56.5
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 6.0e-11 73.2 52 59.6
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 6.0e-11 73.2 52 59.6
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 1.7e-10 71.6 49 67.3
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 5.1e-10 70.1 39 87.2
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 1.5e-09 68.6 71 53.5
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.1e-08 64.7 153 31.4
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 2.8e-08 64.3 108 40.7
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 1.8e-07 61.6 205 29.3
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 2.6e-06 57.8 89 34.8


User provided reference genes

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