Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 0.0e+00 1206.0 860 100.0
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 0.0e+00 1081.6 796 98.9
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.3e-289 998.4 783 92.8
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 5.3e-287 991.1 783 89.0
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 1.5e-249 866.7 785 78.3
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 1.2e-225 787.3 779 68.3
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 1.9e-223 780.0 779 72.3
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 7.8e-206 721.5 801 66.3
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 3.1e-202 709.5 799 62.3
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 1.5e-201 707.2 789 67.0
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 4.2e-199 699.1 789 64.5
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 1.6e-195 687.2 812 63.8
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 4.5e-193 679.1 768 71.6
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 2.7e-190 669.8 792 60.6
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 7.9e-190 668.3 789 62.6
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 6.4e-184 648.7 765 62.6
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 3.2e-183 646.4 789 65.4
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 5.5e-183 645.6 766 59.8
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 3.9e-181 639.4 775 58.7
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.1e-180 637.9 792 62.2
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 5.6e-180 635.6 783 63.1
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 9.6e-180 634.8 792 63.0
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 6.2e-179 632.1 737 61.9
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 8.2e-179 631.7 787 58.6
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 1.4e-178 630.9 742 61.7
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 3.1e-178 629.8 742 61.7
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 3.8e-176 622.9 768 62.0
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 1.6e-174 617.5 512 69.3
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 2.1e-174 617.1 783 60.2
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 5.7e-172 609.0 797 57.6
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 6.3e-171 605.5 790 61.8
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 4.1e-170 602.8 792 60.9
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 5.3e-170 602.4 792 60.9
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 1.2e-169 601.3 809 57.5
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 2.0e-169 600.5 778 61.8
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 2.9e-168 596.7 764 61.1
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 1.5e-164 584.3 790 57.3
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 1.9e-164 583.9 726 66.7
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 5.7e-164 582.4 768 54.6
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 2.2e-163 580.5 787 58.1
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 4.8e-163 579.3 790 62.7
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.4e-162 577.8 767 60.2
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 1.4e-162 577.8 749 64.6
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.8e-162 577.4 796 57.7
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 3.1e-162 576.6 768 60.0
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 5.3e-162 575.9 751 64.6
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.3e-160 571.2 798 62.3
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 3.8e-160 569.7 791 58.4
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 7.9e-158 562.0 748 61.4
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 7.9e-158 562.0 780 57.7
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 3.0e-157 560.1 799 58.1
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 6.7e-157 558.9 794 57.3
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 6.7e-157 558.9 787 57.4
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 8.8e-157 558.5 768 63.3
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 2.0e-156 557.4 763 59.1
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 2.6e-156 557.0 744 63.0
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 2.6e-156 557.0 744 63.0
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 2.6e-156 557.0 770 60.5
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 3.7e-155 553.1 754 62.6
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 3.8e-152 543.1 791 57.4
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.8e-152 543.1 791 57.4
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 3.9e-149 533.1 764 56.9
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 6.7e-149 532.3 790 58.9
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 5.7e-148 529.3 786 54.2
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 5.7e-148 529.3 793 57.6
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 2.2e-147 527.3 754 50.1
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 1.4e-146 524.6 794 53.8
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 4.5e-145 519.6 788 50.0
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 4.5e-145 519.6 811 56.0
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 1.7e-144 517.7 770 60.3
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 5.0e-144 516.2 727 57.1
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 6.5e-144 515.8 785 51.8
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.6e-142 511.1 749 53.8
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 2.3e-141 507.3 783 54.9
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 6.7e-141 505.8 772 51.8
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 1.5e-140 504.6 797 47.9
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 2.6e-140 503.8 563 80.3
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 2.4e-138 497.3 790 55.4
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.2e-137 495.0 780 54.9
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 5.0e-136 489.6 563 79.6
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 1.9e-135 487.6 769 56.2
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 9.4e-135 485.3 787 53.5
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 1.2e-134 485.0 787 51.8
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 2.7e-134 483.8 745 54.0
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 4.7e-134 483.0 828 54.7
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 2.3e-133 480.7 793 58.5
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 4.0e-133 479.9 791 52.8
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.5e-132 478.0 586 64.0
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 3.4e-132 476.9 762 55.6
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 6.3e-131 472.6 774 50.8
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 6.1e-126 456.1 747 54.5
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 2.6e-124 450.7 762 51.3
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 9.8e-124 448.7 797 47.8
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 8.3e-123 445.7 768 52.0
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 8.3e-123 445.7 794 52.4
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 3.1e-122 443.7 744 51.1
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 1.0e-120 438.7 418 70.3
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 8.6e-104 382.5 765 52.7
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 5.2e-101 373.2 768 44.9
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 2.0e-92 344.7 815 39.9
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 1.7e-91 341.7 765 48.6
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 2.0e-84 318.2 190 94.2
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 2.7e-81 307.8 755 33.4
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 3.1e-77 294.3 759 40.4
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.2e-75 288.1 257 63.4
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 1.9e-74 285.0 527 39.8
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.9e-74 285.0 278 59.4
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 1.4e-66 258.8 193 73.1
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 6.7e-64 250.0 707 31.3
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 1.3e-59 235.7 512 58.6
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.5e-58 231.5 593 41.8
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 2.2e-51 208.4 123 93.5
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 1.4e-50 205.7 217 82.9
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 9.4e-50 203.0 132 84.1
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 4.3e-47 194.1 161 67.1
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 4.3e-47 194.1 137 83.9
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 4.5e-44 184.1 241 54.8
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 3.3e-39 167.9 179 56.4
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 4.8e-38 164.1 166 62.0
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-35 154.5 338 36.1
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.6e-33 149.1 329 59.3
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.1e-33 148.7 162 53.7
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 1.8e-21 109.0 95 71.6
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 4.5e-20 104.4 83 62.7
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 1.5e-18 99.4 130 51.5
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 2.5e-18 98.6 79 72.2
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.8e-16 92.4 56 89.3
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 1.5e-15 89.4 55 83.6
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 5.4e-13 80.9 145 38.6
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 1.2e-12 79.7 47 93.6
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 7.7e-12 77.0 148 39.9
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 1.3e-11 76.3 155 41.3
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 5.5e-10 70.9 56 69.6
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 5.5e-10 70.9 56 69.6
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 1.2e-09 69.7 51 66.7
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 4.0e-08 64.7 66 57.6
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 8.9e-08 63.5 52 73.1
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 7.5e-07 60.5 35 82.9
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 9.8e-07 60.1 93 39.8
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.2e-06 58.9 52 63.5


User provided reference genes

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