Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.9e-42 173.7 83 100.0
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.4e-40 169.1 83 96.4
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.2e-39 166.0 83 95.2
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.5e-37 159.1 83 91.6
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 7.4e-37 156.8 83 90.4
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 6.3e-36 153.7 83 89.2
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 1.8e-19 99.0 86 60.5
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 5.9e-18 94.0 85 60.0
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 5.9e-18 94.0 86 58.1
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 1.3e-17 92.8 90 58.9
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 2.9e-17 91.7 85 57.6
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 3.8e-17 91.3 83 59.0
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 5.0e-17 90.9 81 61.7
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 5.0e-17 90.9 84 56.0
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 6.5e-17 90.5 82 58.5
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 8.5e-17 90.1 86 58.1
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 8.5e-17 90.1 86 58.1
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 8.5e-17 90.1 85 57.6
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 8.5e-17 90.1 85 57.6
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 1.5e-16 89.4 83 59.0
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 1.9e-16 89.0 75 62.7
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.5e-16 88.6 78 61.5
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 2.5e-16 88.6 70 62.9
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.5e-16 88.6 82 57.3
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.2e-16 88.2 85 56.5
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 3.2e-16 88.2 81 60.5
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 3.2e-16 88.2 81 60.5
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 3.2e-16 88.2 79 59.5
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 3.2e-16 88.2 72 61.1
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 3.2e-16 88.2 84 54.8
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 3.2e-16 88.2 73 60.3
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.2e-16 87.8 85 56.5
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.6e-15 85.9 84 57.1
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 3.6e-15 84.7 85 56.5
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.6e-15 84.7 83 55.4
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 3.6e-15 84.7 84 53.6
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.7e-15 84.3 86 57.0
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 4.7e-15 84.3 70 60.0
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 6.1e-15 84.0 83 56.6
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 6.1e-15 84.0 74 58.1
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 1.4e-14 82.8 75 60.0
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 1.8e-14 82.4 79 57.0
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 1.8e-14 82.4 83 54.2
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.3e-14 82.0 91 51.6
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 3.0e-14 81.6 87 51.7
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 3.0e-14 81.6 81 55.6
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 4.0e-14 81.3 84 50.0
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 5.2e-14 80.9 74 56.8
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 5.2e-14 80.9 74 55.4
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 6.8e-14 80.5 73 57.5
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 6.8e-14 80.5 81 55.6
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 6.8e-14 80.5 82 56.1
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 8.8e-14 80.1 80 52.5
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 8.8e-14 80.1 86 54.7
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 1.2e-13 79.7 83 54.2
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.5e-13 79.3 92 50.0
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.0e-13 79.0 74 58.1
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 2.0e-13 79.0 74 54.1
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.6e-13 78.6 90 48.9
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 3.4e-13 78.2 82 48.8
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 3.4e-13 78.2 74 54.1
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 3.4e-13 78.2 70 60.0
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 5.7e-13 77.4 83 48.2
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 7.5e-13 77.0 84 51.2
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 7.5e-13 77.0 68 60.3
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 9.8e-13 76.6 84 46.4
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.3e-12 76.3 83 56.6
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.3e-12 76.3 81 51.9
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 1.7e-12 75.9 76 51.3
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.7e-12 75.9 76 51.3
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.7e-12 75.9 64 60.9
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 2.2e-12 75.5 83 53.0
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 2.8e-12 75.1 88 48.9
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 3.7e-12 74.7 86 47.7
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 3.7e-12 74.7 74 54.1
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 4.8e-12 74.3 76 55.3
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 6.3e-12 73.9 82 47.6
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 6.3e-12 73.9 89 51.7
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 8.3e-12 73.6 92 46.7
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 8.3e-12 73.6 81 50.6
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 1.1e-11 73.2 82 47.6
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 1.1e-11 73.2 83 48.2
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 1.1e-11 73.2 83 44.6
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.4e-11 72.8 78 53.8
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 1.4e-11 72.8 83 45.8
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 1.4e-11 72.8 83 45.8
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.8e-11 72.4 77 50.6
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 1.8e-11 72.4 74 51.4
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 2.4e-11 72.0 73 49.3
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 3.1e-11 71.6 82 45.1
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.1e-11 71.6 92 47.8
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 3.1e-11 71.6 79 50.6
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 3.1e-11 71.6 74 54.1
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 3.1e-11 71.6 74 51.4
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 4.1e-11 71.2 76 52.6
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 4.1e-11 71.2 74 55.4
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 5.4e-11 70.9 88 44.3
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 5.4e-11 70.9 74 50.0
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 7.0e-11 70.5 79 53.2
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 7.0e-11 70.5 79 54.4
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 9.1e-11 70.1 86 50.0
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 9.1e-11 70.1 83 47.0
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 9.1e-11 70.1 83 47.0
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 9.1e-11 70.1 79 48.1
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 9.1e-11 70.1 79 48.1
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 1.2e-10 69.7 74 50.0
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.0e-10 68.9 76 50.0
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 2.7e-10 68.6 74 48.6
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 2.7e-10 68.6 86 45.3
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 3.5e-10 68.2 71 49.3
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 3.5e-10 68.2 87 44.8
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 3.5e-10 68.2 77 49.4
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 3.5e-10 68.2 72 56.9
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 4.5e-10 67.8 72 48.6
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 4.5e-10 67.8 72 48.6
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 5.9e-10 67.4 84 46.4
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 5.9e-10 67.4 83 49.4
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 5.9e-10 67.4 82 50.0
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 5.9e-10 67.4 85 43.5
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 5.9e-10 67.4 77 48.1
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 7.7e-10 67.0 74 47.3
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 7.7e-10 67.0 74 47.3
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 7.7e-10 67.0 79 48.1
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.0e-09 66.6 84 50.0
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 1.3e-09 66.2 54 57.4
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 1.3e-09 66.2 74 47.3
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 1.3e-09 66.2 84 46.4
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 1.7e-09 65.9 54 57.4
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.7e-09 65.9 87 43.7
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 2.2e-09 65.5 82 45.1
Eucgr.C02738 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.2e-09 65.5 87 46.0
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 5.0e-09 64.3 74 45.9
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 5.0e-09 64.3 81 43.2
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 6.5e-09 63.9 82 43.9
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 6.5e-09 63.9 82 43.9
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 6.5e-09 63.9 82 43.9
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 6.5e-09 63.9 82 43.9
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 6.5e-09 63.9 80 47.5
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 8.5e-09 63.5 90 46.7
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 1.1e-08 63.2 70 48.6
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.5e-08 62.8 84 46.4
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 1.9e-08 62.4 75 48.0
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 2.5e-08 62.0 68 51.5
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 7.2e-08 60.5 72 45.8
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 7.2e-08 60.5 82 45.1
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 9.4e-08 60.1 85 45.9
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 1.2e-07 59.7 78 47.4
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 2.1e-07 58.9 79 46.8
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 2.7e-07 58.5 73 45.2
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 2.7e-07 58.5 80 48.8
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 3.6e-07 58.2 84 39.3
Potri.015G070700 Populus trichocarpa HOM05D003533 ORTHO05D004009 3.6e-07 58.2 84 44.0
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 4.7e-07 57.8 84 45.2
Peaxi162Scf00017g00254 Petunia axillaris HOM05D003533 ORTHO05D004009 6.1e-07 57.4 62 53.2
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 1.0e-06 56.6 75 45.3
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.8e-06 55.8 52 57.7
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 2.3e-06 55.5 76 47.4
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.0e-06 55.1 69 49.3
HanXRQChr02g0043831 Helianthus annuus HOM05D003533 ORTHO05D222724 3.0e-06 55.1 56 57.1
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 5.2e-06 54.3 70 42.9
THA.LOC104821473 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 5.2e-06 54.3 73 39.7
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 6.8e-06 53.9 72 43.1
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 6.8e-06 53.9 86 41.9
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 6.8e-06 53.9 86 41.9


User provided reference genes

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