Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 2065.4 1097 100.0
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 2021.9 1097 98.2
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1991.5 1113 95.7
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1896.3 1095 91.7
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1636.7 1099 77.5
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1609.3 1097 75.9
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1453.0 1095 68.1
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1414.1 1145 67.4
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1396.7 1102 66.7
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1365.5 1090 67.2
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1364.4 1095 67.0
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1353.6 1097 65.5
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1350.1 1096 65.7
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1338.2 1096 64.7
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1334.7 1095 65.8
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1330.1 974 68.7
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1325.1 1094 65.5
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1321.6 1098 65.7
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1320.4 1100 65.5
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1317.0 1096 63.9
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1305.4 1093 64.2
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1301.6 1098 64.9
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1286.9 1105 62.1
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1285.8 1101 61.5
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1284.6 1104 62.7
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1283.5 1103 61.2
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1270.0 1107 61.0
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 0.0e+00 1268.8 1078 63.4
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 0.0e+00 1268.8 1054 65.2
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1267.7 1102 60.5
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1267.3 1098 62.4
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1263.1 1099 61.0
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 0.0e+00 1256.1 1096 61.2
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1255.7 1102 61.1
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1253.4 1102 61.6
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 0.0e+00 1252.7 1093 61.9
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1251.9 1089 61.6
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 0.0e+00 1251.9 1103 60.9
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 0.0e+00 1247.3 1108 63.5
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1239.6 1106 61.4
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 0.0e+00 1233.8 1062 62.0
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 0.0e+00 1224.5 1094 61.3
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 0.0e+00 1219.1 1097 61.1
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 0.0e+00 1203.0 1074 58.7
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 0.0e+00 1182.9 1196 54.4
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 0.0e+00 1181.8 1092 58.1
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 0.0e+00 1176.0 1116 59.1
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1167.1 1090 57.9
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 0.0e+00 1164.8 1091 57.5
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1158.3 1092 57.7
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 0.0e+00 1156.4 1091 57.1
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 0.0e+00 1146.0 1097 57.0
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 0.0e+00 1145.6 1096 56.5
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1141.3 1093 58.6
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 0.0e+00 1137.5 1096 56.7
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 0.0e+00 1132.9 1075 58.4
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 0.0e+00 1128.2 1092 56.4
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 0.0e+00 1126.3 1108 55.2
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1117.8 1110 55.6
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 0.0e+00 1116.7 1131 55.0
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1116.7 1102 56.6
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 0.0e+00 1115.9 1092 56.5
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 0.0e+00 1110.1 1107 56.2
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 0.0e+00 1109.4 1090 57.1
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 0.0e+00 1107.8 1097 58.8
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 0.0e+00 1104.0 1093 55.7
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 0.0e+00 1102.4 1073 57.1
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 0.0e+00 1097.4 1113 56.0
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 0.0e+00 1090.5 1009 56.4
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 1.5e-311 1072.8 1102 55.1
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 2.3e-311 1072.4 1095 55.3
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 9.0e-311 1070.5 1102 54.9
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 1.3e-309 1066.6 972 56.0
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 1.7e-309 1066.2 1100 54.8
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 3.6e-304 1048.5 1042 55.6
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 3.9e-303 1045.0 1171 52.4
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 4.1e-300 1035.0 1091 51.6
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 2.5e-289 999.2 1094 50.5
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 5.3e-284 981.5 1100 50.0
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 1.4e-279 966.8 1101 49.2
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 3.7e-277 958.7 1110 51.1
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 4.9e-269 931.8 1116 50.9
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 1.4e-228 797.3 1118 43.0
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 4.3e-225 785.8 650 61.5
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 1.6e-219 767.3 500 76.2
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 6.0e-219 765.4 596 67.1
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.4e-215 754.2 1124 40.8
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.4e-215 754.2 1124 40.8
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 4.6e-211 739.2 745 55.4
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.2e-197 693.7 1019 39.1
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 2.7e-187 660.2 1013 37.9
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 1.6e-182 644.4 633 56.7
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 7.0e-175 619.0 1069 34.8
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 1.6e-158 564.7 419 67.1
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 5.8e-137 493.0 430 59.1
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 4.6e-110 403.7 439 52.8
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 4.8e-107 393.7 335 67.2
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 9.9e-105 386.0 466 44.6
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 4.6e-102 377.1 825 30.8
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 1.3e-88 332.4 448 48.7
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 4.8e-83 313.9 372 49.7
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.4e-82 312.4 220 65.5
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 1.4e-79 302.4 287 54.4
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 1.5e-76 292.4 407 45.2
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.8e-75 288.1 458 36.2
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 2.1e-70 271.9 715 28.1
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 1.2e-62 246.1 957 27.2
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 2.7e-57 228.4 658 28.6
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 1.0e-37 163.3 158 52.5
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 6.8e-37 160.6 87 86.2
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.5e-33 148.3 138 56.5
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 6.6e-32 144.1 208 43.3
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 4.7e-30 137.9 119 51.3
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 8.0e-30 137.1 159 48.4
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 2.0e-28 132.5 189 43.9
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.6e-25 122.9 108 50.0
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 6.0e-25 120.9 90 66.7
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 6.6e-24 117.5 122 46.7
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.5e-23 116.3 104 57.7
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 2.5e-23 115.5 140 47.9
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 2.1e-22 112.5 112 53.6
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 2.3e-21 109.0 165 55.8
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 4.0e-21 108.2 101 52.5
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.2e-20 106.7 92 50.0
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 9.9e-20 103.6 132 42.4
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 1.3e-19 103.2 114 44.7
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 2.7e-17 95.5 184 51.6
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 1.7e-16 92.8 132 39.4
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 3.0e-16 92.0 218 45.4
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 3.9e-16 91.7 640 21.4
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 7.3e-15 87.4 658 21.6
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 9.5e-15 87.0 84 50.0
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 1.2e-14 86.7 643 22.2
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 1.2e-14 86.7 84 50.0
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 4.7e-14 84.7 134 40.3
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 1.8e-13 82.8 661 21.2
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 5.2e-13 81.3 660 21.7
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 8.9e-13 80.5 654 21.4
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 7.6e-12 77.4 48 70.8
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.3e-11 76.6 65 52.3
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 7.1e-10 70.9 528 21.2
TPR.G13833 Trifolium pratense HOM05D005298 ORTHO05D037798 1.1e-07 63.5 62 50.0
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 5.6e-07 61.2 62 50.0
Zm00001eb383150 Zea mays HOM05D005298 ORTHO05D030733 7.3e-07 60.8 61 47.5
Zm00001eb082360 Zea mays HOM05D005298 ORTHO05D030733 1.2e-06 60.1 56 51.8


User provided reference genes

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