Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 2.4e-44 181.8 91 100.0
FAN27G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 4.9e-42 174.1 91 95.6
FvH4_2g10470 Fragaria vesca HOM05D007135 ORTHO05D008880 9.3e-41 169.9 89 95.5
FAN24G2677 Fragaria x ananassa HOM05D007135 ORTHO05D008880 9.3e-41 169.9 89 95.5
RcHm_v2.0_Chr6g0267951 Rosa chinensis HOM05D007135 ORTHO05D008880 6.0e-40 167.2 95 89.5
MD10G1062900 Malus domestica HOM05D007135 ORTHO05D008880 1.9e-33 145.6 97 77.3
Cfa005113 Carpinus fangiana HOM05D007135 ORTHO05D008880 7.9e-32 140.2 91 81.3
CANSAT11G0395 Cannabis sativa HOM05D007135 ORTHO05D008880 1.3e-31 139.4 101 69.3
Prupe.8G083700 Prunus persica HOM05D007135 ORTHO05D008880 1.3e-31 139.4 100 73.0
COL.COLO4_26047 Corchorus olitorius HOM05D007135 ORTHO05D008880 1.8e-31 139.0 91 78.0
TWI75G0424 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 1.9e-30 135.6 92 73.9
Potri.009G124700 Populus trichocarpa HOM05D007135 ORTHO05D008880 2.5e-30 135.2 87 77.0
MELO3C013419.2 Cucumis melo HOM05D007135 ORTHO05D008880 9.6e-30 133.3 91 75.8
Haze_02238 Corylus avellana HOM05D007135 ORTHO05D008880 1.3e-29 132.9 91 80.2
QL11p046458 Quercus lobata HOM05D007135 ORTHO05D008880 1.3e-29 132.9 94 70.2
PGR142G3962 Punica granatum HOM05D007135 ORTHO05D008880 1.6e-29 132.5 94 73.4
Thecc.02G074900 Theobroma cacao HOM05D007135 ORTHO05D008880 1.6e-29 132.5 91 75.8
Atru.chr5.3145 Acer truncatum HOM05D007135 ORTHO05D008880 2.1e-29 132.1 91 71.4
Duzib132G0527 Durio zibethinus HOM05D007135 ORTHO05D008880 2.8e-29 131.7 91 73.6
Gohir.D02G222000 Gossypium hirsutum HOM05D007135 ORTHO05D008880 4.8e-29 131.0 91 73.6
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 4.8e-29 131.0 91 69.2
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 4.8e-29 131.0 91 69.2
Gorai.005G250000 Gossypium raimondii HOM05D007135 ORTHO05D008880 8.2e-29 130.2 91 72.5
Potri.004G163100 Populus trichocarpa HOM05D007135 ORTHO05D008880 8.2e-29 130.2 90 75.6
Gorai.002G149200 Gossypium raimondii HOM05D007135 ORTHO05D008880 1.1e-28 129.8 91 72.5
ClCG02G004560 Citrullus lanatus HOM05D007135 ORTHO05D008880 1.8e-28 129.0 91 74.7
Duzib248G1605 Durio zibethinus HOM05D007135 ORTHO05D008880 3.1e-28 128.3 91 73.6
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 4.0e-28 127.9 91 72.5
Gohir.A13G090900 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.2e-27 126.3 91 71.4
Cpa.g.sc150.16 Carica papaya HOM05D007135 ORTHO05D008880 2.6e-27 125.2 91 71.4
Aqoxy2G03368 Aquilegia oxysepala HOM05D007135 ORTHO05D008880 3.4e-27 124.8 93 67.7
CSS0018566 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 7.6e-27 123.6 89 70.8
CSS0017994 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 1.0e-26 123.2 89 68.5
Ciclev10029699m.g Citrus clementina HOM05D007135 ORTHO05D008880 2.2e-26 122.1 91 70.3
Nn5g29239 Nelumbo nucifera HOM05D007135 ORTHO05D008880 2.9e-26 121.7 91 71.4
CAN.G170.101 Capsicum annuum HOM05D007135 ORTHO05D008880 4.9e-26 120.9 91 67.0
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 6.5e-26 120.6 92 68.5
Manes.11G081700 Manihot esculenta HOM05D007135 ORTHO05D008880 1.1e-25 119.8 89 67.4
DCAR_003685 Daucus carota HOM05D007135 ORTHO05D008880 1.4e-25 119.4 96 66.7
Cc02_g16900 Coffea canephora HOM05D007135 ORTHO05D008880 1.9e-25 119.0 99 64.6
Sed0017056 Sechium edule HOM05D007135 ORTHO05D008880 1.9e-25 119.0 91 69.2
Thhalv10000391m.g Eutrema salsugineum HOM05D007135 ORTHO05D008880 4.2e-25 117.9 99 64.6
Manes.04G083200 Manihot esculenta HOM05D007135 ORTHO05D008880 4.2e-25 117.9 90 70.0
Sc08g0000910 Simmondsia chinensis HOM05D007135 ORTHO05D008880 7.1e-25 117.1 97 59.8
AL4G10430 Arabidopsis lyrata HOM05D007135 ORTHO05D008880 9.3e-25 116.7 96 63.5
Migut.B00173 Erythranthe guttata HOM05D007135 ORTHO05D008880 9.3e-25 116.7 92 66.3
Gohir.D13G096700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.2e-24 116.3 82 73.2
CARHR112160 Cardamine hirsuta HOM05D007135 ORTHO05D008880 1.6e-24 115.9 99 62.6
MD05G1055600 Malus domestica HOM05D007135 ORTHO05D008880 1.6e-24 115.9 97 63.9
BraA09t41224Z Brassica rapa HOM05D007135 ORTHO05D008880 4.6e-24 114.4 91 64.8
BolC8t51729H Brassica oleracea HOM05D007135 ORTHO05D008880 6.0e-24 114.0 90 63.3
Medtr3g117570 Medicago truncatula HOM05D007135 ORTHO05D008880 6.0e-24 114.0 92 66.3
Sp4g00480 Schrenkiella parvula HOM05D007135 ORTHO05D008880 7.9e-24 113.6 99 60.6
Aa31LG7G15200 Aethionema arabicum HOM05D007135 ORTHO05D008880 1.0e-23 113.2 94 63.8
AT2G21290 Arabidopsis thaliana HOM05D007135 ORTHO05D008880 1.3e-23 112.8 99 61.6
A09p58330 Brassica napus HOM05D007135 ORTHO05D008880 1.3e-23 112.8 90 62.2
Rhsim05G0068200 Rhododendron simsii HOM05D007135 ORTHO05D008880 1.8e-23 112.5 79 72.2
TWI79G1445 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 1.8e-23 112.5 79 72.2
Carub.0004s0033 Capsella rubella HOM05D007135 ORTHO05D008880 2.3e-23 112.1 99 59.6
PSO675G0190 Papaver somniferum HOM05D007135 ORTHO05D008880 2.3e-23 112.1 91 63.7
PSO541G1924 Papaver somniferum HOM05D007135 ORTHO05D008880 3.0e-23 111.7 91 62.6
Psat5g003840 Pisum sativum HOM05D007135 ORTHO05D008880 3.0e-23 111.7 87 70.1
A04p16070 Brassica napus HOM05D007135 ORTHO05D008880 3.9e-23 111.3 95 58.9
BraA04t17247Z Brassica rapa HOM05D007135 ORTHO05D008880 3.9e-23 111.3 95 58.9
Phvul.009G002700 Phaseolus vulgaris HOM05D007135 ORTHO05D008880 5.1e-23 110.9 91 65.9
vmacro17421 Vaccinium macrocarpon HOM05D007135 ORTHO05D008880 5.1e-23 110.9 78 73.1
Lalb_Chr23g0265121 Lupinus albus HOM05D007135 ORTHO05D008880 6.7e-23 110.5 55 94.5
Lalb_Chr23g0265141 Lupinus albus HOM05D007135 ORTHO05D008880 6.7e-23 110.5 55 94.5
Ca_15331_v3 Cicer arietinum L. HOM05D007135 ORTHO05D008880 8.7e-23 110.2 91 64.8
TPR.G32169 Trifolium pratense HOM05D007135 ORTHO05D008880 8.7e-23 110.2 83 67.5
C08p41660 Brassica napus HOM05D007135 ORTHO05D008880 1.1e-22 109.8 93 62.4
BcaB08g34980 Brassica carinata HOM05D007135 ORTHO05D008880 1.5e-22 109.4 87 66.7
ATR0149G014 Amborella trichopoda HOM05D007135 ORTHO05D008880 2.5e-22 108.6 92 65.2
SHI05613 Sapria himalayana HOM05D007135 ORTHO05D008880 2.5e-22 108.6 54 92.6
BcaC07g41158 Brassica carinata HOM05D007135 ORTHO05D008880 3.3e-22 108.2 91 62.6
MBI05_g16268_MAGBIO Magnolia biondii HOM05D007135 ORTHO05D008880 3.3e-22 108.2 89 65.2
BcaC02g08801 Brassica carinata HOM05D007135 ORTHO05D008880 4.3e-22 107.8 93 59.1
BolC4t26651H Brassica oleracea HOM05D007135 ORTHO05D008880 4.3e-22 107.8 93 59.1
unitig_60.g25867 Utricularia gibba HOM05D007135 ORTHO05D008880 4.3e-22 107.8 84 65.5
C04p50530 Brassica napus HOM05D007135 ORTHO05D008880 5.7e-22 107.5 93 58.1
EL10Ac9g21635 Beta vulgaris HOM05D007135 ORTHO05D008880 7.4e-22 107.1 94 60.6
Dinv26818 Davidia involucrata HOM05D000193 ORTHO05D000402 9.7e-22 106.7 78 69.2
Lj1g0005652 Lotus japonicus HOM05D007135 ORTHO05D008880 9.7e-22 106.7 56 89.3
AUR62010386 Chenopodium quinoa HOM05D007135 ORTHO05D008880 1.3e-21 106.3 94 55.3
AUR62016832 Chenopodium quinoa HOM05D007135 ORTHO05D008880 1.3e-21 106.3 94 55.3
CiPaw.05G073400 Carya illinoinensis HOM05D007135 ORTHO05D008880 2.8e-21 105.1 78 70.5
Sabra09G0095700 Salix brachista HOM05D007135 ORTHO05D008880 8.2e-21 103.6 72 73.6
Ah.01g018800 Amaranthus hybridus HOM05D007135 ORTHO05D008880 1.1e-20 103.2 93 55.9
Duzib052G0169 Durio zibethinus HOM05D007135 ORTHO05D008880 1.1e-20 103.2 75 70.7
Nitab4.5_0005266g0060 Nicotiana tabacum HOM05D007135 ORTHO05D008880 1.1e-20 103.2 87 63.2
Os09g0528100 Oryza sativa ssp. japonica HOM05D007135 ORTHO05D008880 2.4e-20 102.1 52 92.3
Nitab4.5_0005932g0010 Nicotiana tabacum HOM05D007135 ORTHO05D008880 3.1e-20 101.7 81 66.7
Actinidia02247 Actinidia chinensis HOM05D007135 ORTHO05D008880 5.3e-20 100.9 101 55.4
FAN20G0703 Fragaria x ananassa HOM05D007135 ORTHO05D008880 6.9e-20 100.5 79 70.9
Sabra04G0109400 Salix brachista HOM05D007135 ORTHO05D008880 9.0e-20 100.1 75 73.3
GSVIVG01024170001 Vitis vinifera HOM05D007135 ORTHO05D008880 1.2e-19 99.8 76 68.4
ECA234G2991 Erigeron canadensis HOM05D007135 ORTHO05D008880 2.6e-19 98.6 97 57.7
CsaV3_7G000400 Cucumis sativus L. HOM05D007135 ORTHO05D008880 2.9e-18 95.1 76 67.1
THA.LOC104824791 Tarenaya hassleriana HOM05D007135 ORTHO05D008880 1.4e-17 92.8 83 60.2
TAR381G0296 Trochodendron aralioides HOM05D007135 ORTHO05D008880 1.4e-17 92.8 80 63.8
Glyma.06G007700 Glycine max HOM05D007135 ORTHO05D008880 5.1e-15 84.3 57 77.2
Glyma.04G007900 Glycine max HOM05D007135 ORTHO05D008880 8.8e-15 83.6 80 57.5
Lsat_1_v5_gn_4_67341 Lactuca sativa HOM05D007135 ORTHO05D008880 8.8e-15 83.6 80 56.2
Haze_15927 Corylus avellana HOM05D018783 ORTHO05D008880 1.9e-14 82.4 52 82.7
HanXRQChr10g0294181 Helianthus annuus HOM05D007135 ORTHO05D008880 4.3e-14 81.3 80 57.5
Peaxi162Scf00016g00015 Petunia axillaris HOM05D007135 ORTHO05D008880 4.3e-14 81.3 64 65.6
Haze_08383 Corylus avellana HOM05D007135 ORTHO05D008880 2.2e-13 79.0 50 84.0
HPP92_008881 Vanilla planifolia HOM05D007135 ORTHO05D008880 2.8e-13 78.6 83 53.0
Zm00001eb103340 Zea mays HOM05D007135 ORTHO05D008880 3.4e-11 71.6 80 50.0
RhsimUnG0003900 Rhododendron simsii HOM05D004431 ORTHO05D005053 5.5e-09 64.3 40 82.5
RhsimUnG0067300 Rhododendron simsii HOM05D004431 ORTHO05D005053 5.5e-09 64.3 40 82.5


User provided reference genes

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