Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.8e-165 585.9 307 100.0
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.3e-123 446.0 239 97.9
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 3.5e-100 369.0 231 87.4
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 1.7e-94 350.1 184 98.9
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 3.6e-89 332.4 186 95.7
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 1.2e-79 300.8 190 88.4
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 4.2e-77 292.4 191 86.4
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 2.9e-70 269.6 191 81.2
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 3.1e-64 249.6 191 74.3
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.6e-63 246.5 189 73.5
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 3.8e-62 242.7 188 72.3
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 3.8e-62 242.7 191 71.7
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 2.5e-61 240.0 205 69.3
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 9.4e-61 238.0 190 73.2
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 1.2e-60 237.7 196 68.4
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.2e-60 237.7 184 73.4
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 6.1e-60 235.3 196 69.4
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 7.9e-60 235.0 190 71.1
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 1.8e-59 233.8 196 69.4
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.3e-59 233.4 150 83.3
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 5.1e-59 232.3 138 89.1
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 6.7e-59 231.9 193 67.9
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 1.5e-58 230.7 186 69.4
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 1.5e-58 230.7 171 74.3
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 2.6e-58 229.9 193 68.4
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 7.4e-58 228.4 142 84.5
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 7.4e-58 228.4 192 67.7
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 9.7e-58 228.0 191 69.6
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 9.7e-58 228.0 142 83.8
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 9.7e-58 228.0 142 85.9
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 1.3e-57 227.6 195 67.7
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 1.3e-57 227.6 142 83.8
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 2.8e-57 226.5 196 66.8
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 3.7e-57 226.1 142 83.8
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 4.8e-57 225.7 192 67.7
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 4.8e-57 225.7 192 67.7
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.3e-57 225.3 192 66.7
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 6.3e-57 225.3 192 66.7
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 6.3e-57 225.3 195 67.7
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 8.2e-57 224.9 186 67.2
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 8.2e-57 224.9 134 89.6
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 1.1e-56 224.6 185 68.1
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 1.1e-56 224.6 186 67.2
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 1.4e-56 224.2 142 83.8
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 1.4e-56 224.2 148 81.1
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 1.8e-56 223.8 192 68.2
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.4e-56 223.4 194 68.0
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 3.1e-56 223.0 197 67.5
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 4.1e-56 222.6 191 67.5
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 5.3e-56 222.2 175 73.1
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 5.3e-56 222.2 192 67.2
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 5.3e-56 222.2 145 82.8
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 6.9e-56 221.9 187 67.4
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 6.9e-56 221.9 188 67.0
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 6.9e-56 221.9 189 67.7
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 6.9e-56 221.9 133 86.5
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 9.1e-56 221.5 191 67.0
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 9.1e-56 221.5 192 67.2
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 9.1e-56 221.5 190 66.3
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 1.2e-55 221.1 185 67.6
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 1.2e-55 221.1 188 67.0
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 2.0e-55 220.3 173 70.5
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 2.6e-55 219.9 187 67.9
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.6e-55 219.9 189 67.2
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.4e-55 219.5 192 67.2
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 3.4e-55 219.5 192 67.2
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 3.4e-55 219.5 195 64.1
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 5.9e-55 218.8 190 65.8
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 5.9e-55 218.8 191 66.0
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 7.7e-55 218.4 130 86.2
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.7e-55 218.4 174 70.1
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.0e-54 218.0 185 69.7
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 1.3e-54 217.6 197 64.0
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.7e-54 217.2 147 78.2
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.7e-54 217.2 150 76.0
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.2e-54 216.9 143 79.7
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 2.2e-54 216.9 185 69.7
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 3.8e-54 216.1 148 78.4
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 3.8e-54 216.1 191 65.4
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 5.0e-54 215.7 138 81.2
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 5.0e-54 215.7 148 79.1
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 6.5e-54 215.3 191 65.4
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 6.5e-54 215.3 150 78.7
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 8.5e-54 214.9 134 82.8
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 8.5e-54 214.9 140 79.3
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.1e-53 214.5 186 67.7
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 1.1e-53 214.5 196 64.8
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.4e-53 214.2 138 81.9
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 1.4e-53 214.2 143 77.6
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 1.4e-53 214.2 186 66.1
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.9e-53 213.8 184 66.3
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 1.9e-53 213.8 187 68.4
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.9e-53 213.8 134 82.8
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 1.9e-53 213.8 177 70.1
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 2.5e-53 213.4 148 77.0
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.5e-53 213.4 185 68.6
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.5e-53 213.4 197 62.4
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 3.2e-53 213.0 137 81.0
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 4.2e-53 212.6 199 64.8
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 4.2e-53 212.6 196 62.2
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.2e-53 211.8 174 69.0
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 9.4e-53 211.5 143 81.1
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.2e-52 211.1 187 64.7
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.2e-52 211.1 195 64.1
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 1.6e-52 210.7 148 79.1
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 2.7e-52 209.9 136 80.9
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 3.6e-52 209.5 188 64.9
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 4.7e-52 209.1 187 67.9
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 4.7e-52 209.1 187 67.9
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 4.7e-52 209.1 140 80.0
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 6.1e-52 208.8 187 67.9
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 7.9e-52 208.4 157 75.2
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 7.9e-52 208.4 136 80.9
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.3e-51 206.8 184 67.4
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 2.3e-51 206.8 133 81.2
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 3.0e-51 206.5 186 67.2
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 3.0e-51 206.5 142 78.2
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 5.2e-51 205.7 171 71.3
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 5.2e-51 205.7 196 61.2
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 3.3e-50 203.0 160 74.4
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 3.3e-50 203.0 192 63.0
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 3.3e-50 203.0 136 79.4
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 4.4e-50 202.6 144 75.7
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 4.4e-50 202.6 139 77.0
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 5.7e-50 202.2 187 63.6
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 1.3e-49 201.1 165 70.3
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 3.7e-49 199.5 183 61.2
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 1.4e-48 197.6 112 91.1
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 5.3e-48 195.7 111 90.1
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 5.3e-48 195.7 111 90.1
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 2.6e-47 193.4 111 91.0
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 3.5e-47 193.0 134 77.6
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 1.3e-46 191.0 140 69.3
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 3.8e-46 189.5 193 59.1
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 6.5e-46 188.7 109 87.2
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 1.9e-45 187.2 168 64.3
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 1.9e-45 187.2 109 88.1
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 5.5e-45 185.7 191 59.7
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.2e-44 184.5 187 58.8
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 3.6e-44 183.0 173 64.2
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 8.0e-44 181.8 108 83.3
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 1.8e-43 180.6 108 88.0
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 2.3e-43 180.3 342 40.6
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 1.2e-42 177.9 164 64.0
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 1.5e-42 177.6 196 56.6
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 3.3e-42 176.4 136 69.9
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 4.4e-42 176.0 189 57.7
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 6.3e-41 172.2 128 73.4
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 3.1e-40 169.9 139 63.3
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 6.5e-38 162.2 154 62.3
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 1.2e-36 157.9 110 72.7
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 1.6e-36 157.5 108 72.2
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 2.1e-36 157.1 125 67.2
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 1.0e-35 154.8 146 62.3
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 9.5e-29 131.7 117 65.0
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.6e-28 131.0 103 73.8
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 2.8e-28 130.2 107 59.8
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 2.2e-25 120.6 134 51.5
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 9.2e-24 115.2 91 69.2
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 1.6e-23 114.4 99 65.7
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 7.8e-23 112.1 86 69.8
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.3e-22 111.3 127 55.1
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 2.9e-22 110.2 87 71.3
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.9e-21 107.5 87 70.1
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.9e-21 107.5 87 70.1
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 1.4e-16 91.3 91 58.2
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.2e-12 78.2 46 82.6
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 1.6e-12 77.8 46 87.0
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 2.8e-12 77.0 44 88.6
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 3.2e-08 63.5 38 81.6


User provided reference genes

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