Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3310 Fragaria x ananassa HOM05D000876 ORTHO05D046130 6.4e-76 287.3 147 100.0
FvH4_3g21471 Fragaria vesca HOM05D000034 ORTHO05D000285 1.0e-44 183.7 171 66.1
FvH4_1g10461 Fragaria vesca HOM05D000034 ORTHO05D000037 4.1e-30 135.2 139 61.9
FvH4_3g29911 Fragaria vesca HOM05D000034 ORTHO05D000037 3.8e-28 128.6 139 59.7
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.2e-27 125.2 79 86.1
FAN17G2734 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.6e-26 123.2 78 85.9
FAN14G5489 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.5e-24 116.7 79 79.7
FvH4_4g30624 Fragaria vesca HOM05D000034 ORTHO05D000037 7.0e-22 107.8 59 91.5
FvH4_6g48771 Fragaria vesca HOM05D000034 ORTHO05D046130 2.8e-18 95.9 130 53.1
FAN05G3579 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.2e-17 91.7 63 77.8
FAN21G0561 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.4e-16 88.6 172 35.5
arahy.Tifrunner.gnm1.ann1.T11VTH Arachis hypogaea HOM05D000034 ORTHO05D000037 1.7e-15 86.7 138 37.0
FvH4_6g30381 Fragaria vesca HOM05D000034 ORTHO05D000037 2.4e-14 82.8 65 58.5
RcHm_v2.0_Chr7g0199281 Rosa chinensis HOM05D000876 ORTHO05D000285 2.4e-14 82.8 79 55.7
RcHm_v2.0_Chr5g0029731 Rosa chinensis HOM05D000876 ORTHO05D000285 4.1e-14 82.0 79 54.4
Atru.chr5.1610 Acer truncatum HOM05D000034 ORTHO05D000037 3.5e-13 79.0 98 46.9
FvH4_6g53022 Fragaria vesca HOM05D000876 ORTHO05D000285 5.9e-13 78.2 82 51.2
FvH4_7g00070 Fragaria vesca HOM05D000876 ORTHO05D000285 7.8e-13 77.8 82 51.2
FAN02G2262 Fragaria x ananassa HOM05D000876 ORTHO05D000285 7.8e-13 77.8 75 54.7
FAN25G1382 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.7e-12 76.6 80 53.8
arahy.Tifrunner.gnm1.ann1.D3784E Arachis hypogaea HOM05D000034 ORTHO05D000037 8.6e-12 74.3 129 34.1
FAN06G3321 Fragaria x ananassa HOM05D000876 ORTHO05D000285 9.5e-11 70.9 66 56.1
arahy.Tifrunner.gnm1.ann1.5VN1MT Arachis hypogaea HOM05D000034 ORTHO05D000037 2.1e-10 69.7 54 61.1
arahy.Tifrunner.gnm1.ann1.WA83K8 Arachis hypogaea HOM05D000034 ORTHO05D000037 2.1e-10 69.7 54 61.1
FAN22G0382 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.1e-10 69.7 66 54.5
FAN10G2724 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.8e-10 69.3 66 56.1
arahy.Tifrunner.gnm1.ann1.8YPI5A Arachis hypogaea HOM05D000034 ORTHO05D000037 6.1e-10 68.2 54 59.3
arahy.Tifrunner.gnm1.ann1.HDS2CW Arachis hypogaea HOM05D000034 ORTHO05D000037 6.1e-10 68.2 54 59.3
arahy.Tifrunner.gnm1.ann1.TEB0R7 Arachis hypogaea HOM05D000034 ORTHO05D000037 6.1e-10 68.2 54 59.3
arahy.Tifrunner.gnm1.ann1.WZP6LC Arachis hypogaea HOM05D000034 ORTHO05D000037 6.1e-10 68.2 54 59.3
arahy.Tifrunner.gnm1.ann1.Z5ZQ3Q Arachis hypogaea HOM05D000034 ORTHO05D000037 6.1e-10 68.2 54 59.3
FAN15G0148 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.1e-10 68.2 183 29.5
Prupe.8G016500 Prunus persica HOM05D000876 ORTHO05D000285 8.0e-10 67.8 72 50.0
arahy.Tifrunner.gnm1.ann1.UAQH0I Arachis hypogaea HOM05D000034 ORTHO05D000037 1.4e-09 67.0 71 47.9
arahy.Tifrunner.gnm1.ann1.NV9TN2 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.8e-09 66.6 175 26.9
RcHm_v2.0_Chr2g0128681 Rosa chinensis HOM05D000876 ORTHO05D000285 1.8e-09 66.6 81 45.7
FAN08G0806 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.3e-09 66.2 66 54.5
arahy.Tifrunner.gnm1.ann1.6D5SIE Arachis hypogaea HOM05D000034 ORTHO05D000037 3.1e-09 65.9 54 57.4
arahy.Tifrunner.gnm1.ann1.JE1DTX Arachis hypogaea HOM05D000034 ORTHO05D000037 5.2e-09 65.1 50 62.0
arahy.Tifrunner.gnm1.ann1.XKJ2CY Arachis hypogaea HOM05D000034 ORTHO05D000037 8.9e-09 64.3 54 53.7
arahy.Tifrunner.gnm1.ann1.LLG7R0 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.2e-08 63.9 54 57.4
RcHm_v2.0_Chr2g0103961 Rosa chinensis HOM05D000876 ORTHO05D000285 1.2e-08 63.9 81 44.4
arahy.Tifrunner.gnm1.ann1.B3GXWW Arachis hypogaea HOM05D000034 ORTHO05D000037 1.5e-08 63.5 54 57.4
arahy.Tifrunner.gnm1.ann1.Y4Z60F Arachis hypogaea HOM05D000034 ORTHO05D000037 2.0e-08 63.2 54 53.7
Prupe.5G020800 Prunus persica HOM05D000876 ORTHO05D000285 2.0e-08 63.2 69 50.7
Prupe.5G207000 Prunus persica HOM05D000876 ORTHO05D000285 2.0e-08 63.2 69 50.7
RcHm_v2.0_Chr4g0428601 Rosa chinensis HOM05D000876 ORTHO05D000285 2.0e-08 63.2 76 42.1
FAN11G2465 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.6e-08 62.8 69 46.4
Hma1.2p1_1123F.1_g259380 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 2.6e-08 62.8 172 24.4
AUR62002951 Chenopodium quinoa HOM05D000034 ORTHO05D000037 4.4e-08 62.0 121 29.8
FAN05G0722 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.4e-08 62.0 69 44.9
FAN21G1280 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.4e-08 62.0 73 45.2
Hma1.2p1_0148F.1_g066085 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.8e-08 61.6 59 47.5
Hma1.2p1_0344F.1_g131060 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.8e-08 61.6 59 47.5
RcHm_v2.0_Chr6g0254701 Rosa chinensis HOM05D000876 ORTHO05D000285 5.8e-08 61.6 81 43.2
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 7.5e-08 61.2 197 22.3
CANSAT11G0430 Cannabis sativa HOM05D000034 ORTHO05D000037 1.3e-07 60.5 57 45.6
arahy.Tifrunner.gnm1.ann1.H5LE2R Arachis hypogaea HOM05D000034 ORTHO05D000037 1.7e-07 60.1 54 53.7
arahy.Tifrunner.gnm1.ann1.D4V5SR Arachis hypogaea HOM05D000034 ORTHO05D000037 2.2e-07 59.7 50 56.0
FvH4_1g28413 Fragaria vesca HOM05D000876 ORTHO05D015047 2.2e-07 59.7 73 43.8
FvH4_5g23913 Fragaria vesca HOM05D000876 ORTHO05D000285 2.2e-07 59.7 73 43.8
FAN09G3353 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.2e-07 59.7 73 43.8
Prupe.4G113600 Prunus persica HOM05D000876 ORTHO05D000285 2.2e-07 59.7 69 47.8
CANSAT25G1749 Cannabis sativa HOM05D000034 ORTHO05D000037 2.9e-07 59.3 57 45.6
Lj1g0001620 Lotus japonicus HOM05D000034 ORTHO05D000037 2.9e-07 59.3 117 29.9
Hma1.2p1_0344F.1_g131050 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 4.9e-07 58.5 59 45.8
arahy.Tifrunner.gnm1.ann1.W21WHR Arachis hypogaea HOM05D000034 ORTHO05D000037 6.4e-07 58.2 50 56.0
CANSAT78G0143 Cannabis sativa HOM05D000034 ORTHO05D000037 6.4e-07 58.2 57 42.1
FAN16G1569 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.4e-07 58.2 49 55.1
CANSAT25G0317 Cannabis sativa HOM05D000034 ORTHO05D000037 8.3e-07 57.8 57 43.9
arahy.Tifrunner.gnm1.ann1.P6JKAM Arachis hypogaea HOM05D000034 ORTHO05D000037 1.1e-06 57.4 63 47.6
CANSAT56G4166 Cannabis sativa HOM05D000034 ORTHO05D000037 1.1e-06 57.4 57 43.9
FAN21G2190 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.1e-06 57.4 67 50.7
Sed0003641 Sechium edule HOM05D000034 ORTHO05D000037 1.1e-06 57.4 58 46.6
CANSAT21G2391 Cannabis sativa HOM05D000034 ORTHO05D000037 1.9e-06 56.6 57 43.9
Sed0001448 Sechium edule HOM05D000034 ORTHO05D000037 2.4e-06 56.2 58 46.6
Sed0014053 Sechium edule HOM05D000034 ORTHO05D000037 2.4e-06 56.2 58 46.6
CANSAT01G0970 Cannabis sativa HOM05D000034 ORTHO05D000037 3.2e-06 55.8 67 40.3
CANSAT25G2314 Cannabis sativa HOM05D000034 ORTHO05D000037 3.2e-06 55.8 67 40.3
CANSAT54G0349 Cannabis sativa HOM05D000034 ORTHO05D000037 3.2e-06 55.8 67 40.3
Lj1g0007225 Lotus japonicus HOM05D000034 ORTHO05D000037 3.2e-06 55.8 46 52.2
Lj1g0016720 Lotus japonicus HOM05D000034 ORTHO05D000037 3.2e-06 55.8 46 52.2
Lj3g0017061 Lotus japonicus HOM05D000034 ORTHO05D000037 3.2e-06 55.8 46 52.2
Ciclev10023522m.g Citrus clementina HOM05D000034 ORTHO05D000037 4.1e-06 55.5 70 41.4
TPR.G31033 Trifolium pratense HOM05D000034 ORTHO05D000037 5.4e-06 55.1 48 54.2
TWI73G0374 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 5.4e-06 55.1 69 34.8
TWI74G1293 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 5.4e-06 55.1 69 34.8
Atru.chr1.2563 Acer truncatum HOM05D000034 ORTHO05D000037 7.0e-06 54.7 56 46.4
Atru.chr10.1596 Acer truncatum HOM05D000034 ORTHO05D000037 7.0e-06 54.7 56 46.4
Atru.chr13.2003 Acer truncatum HOM05D000034 ORTHO05D000037 7.0e-06 54.7 56 46.4
arahy.Tifrunner.gnm1.ann1.8V7KMF Arachis hypogaea HOM05D000034 ORTHO05D000037 7.0e-06 54.7 43 62.8
FvH4_6g39920 Fragaria vesca HOM05D000876 ORTHO05D000285 7.0e-06 54.7 70 50.0
RcHm_v2.0_Chr2g0103971 Rosa chinensis HOM05D000034 ORTHO05D000037 7.0e-06 54.7 57 43.9
FAN23G0201 Fragaria x ananassa HOM05D000876 ORTHO05D000285 9.2e-06 54.3 76 44.7
FAN23G2351 Fragaria x ananassa HOM05D000876 ORTHO05D000285 9.2e-06 54.3 76 44.7
MD00G1175400 Malus domestica HOM05D018741 ORTHO05D020857 9.2e-06 54.3 82 40.2


User provided reference genes

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