Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 7.5e-83 310.5 155 100.0
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 9.2e-81 303.5 155 97.4
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.1e-65 253.4 155 80.6
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.1e-65 253.4 155 80.0
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 1.6e-64 249.6 151 80.8
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.6e-64 249.6 151 80.8
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.6e-64 249.6 151 80.8
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.6e-64 248.1 151 80.1
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 4.3e-62 241.5 155 77.4
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 3.6e-61 238.4 155 75.5
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 1.1e-60 236.9 155 75.5
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 3.4e-59 231.9 155 72.9
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 3.4e-59 231.9 155 71.6
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 9.9e-59 230.3 155 72.3
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 1.3e-58 229.9 155 71.0
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 1.3e-58 229.9 155 71.6
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 1.7e-58 229.6 155 72.3
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 3.7e-58 228.4 155 70.3
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 8.3e-58 227.3 155 70.3
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 1.1e-57 226.9 155 70.3
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 1.4e-57 226.5 155 71.6
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 1.4e-57 226.5 155 70.3
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 1.4e-57 226.5 155 72.3
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 1.9e-57 226.1 151 70.9
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.9e-57 226.1 155 70.3
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 1.9e-57 226.1 154 71.4
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 2.4e-57 225.7 155 71.0
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 2.4e-57 225.7 151 71.5
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 4.1e-57 224.9 155 69.0
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.2e-57 223.8 145 73.1
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.2e-57 223.8 155 71.0
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 9.2e-57 223.8 151 71.5
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.2e-56 223.4 145 72.4
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 1.6e-56 223.0 155 69.0
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 1.6e-56 223.0 155 69.0
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 2.1e-56 222.6 151 70.9
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 2.1e-56 222.6 151 70.9
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.7e-56 222.2 155 69.7
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 3.5e-56 221.9 155 68.4
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 3.5e-56 221.9 155 69.7
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 4.6e-56 221.5 155 70.3
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 4.6e-56 221.5 155 68.4
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 4.6e-56 221.5 155 67.7
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 4.6e-56 221.5 155 69.0
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 4.6e-56 221.5 155 69.7
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 4.6e-56 221.5 155 71.0
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 6.0e-56 221.1 151 70.9
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 7.8e-56 220.7 151 70.9
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 7.8e-56 220.7 151 71.5
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.0e-55 220.3 151 69.5
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.0e-55 220.3 151 70.9
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 1.3e-55 219.9 151 67.5
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 1.3e-55 219.9 151 67.5
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 1.3e-55 219.9 145 72.4
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 1.3e-55 219.9 155 66.5
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.7e-55 219.5 151 69.5
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 1.7e-55 219.5 155 69.0
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.7e-55 219.5 155 67.7
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.7e-55 219.5 151 70.9
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.3e-55 219.2 155 67.7
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.3e-55 219.2 155 67.7
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 2.3e-55 219.2 153 67.3
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 3.0e-55 218.8 145 71.7
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 3.0e-55 218.8 151 68.9
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.9e-55 218.4 155 69.0
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 3.9e-55 218.4 151 69.5
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 5.1e-55 218.0 155 66.5
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 5.1e-55 218.0 151 70.2
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 5.1e-55 218.0 149 69.1
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 6.6e-55 217.6 151 68.9
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 6.6e-55 217.6 153 68.6
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 6.6e-55 217.6 155 68.4
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 6.6e-55 217.6 155 69.0
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 8.6e-55 217.2 151 67.5
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 8.6e-55 217.2 143 70.6
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 8.6e-55 217.2 155 67.1
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 8.6e-55 217.2 151 69.5
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.5e-54 216.5 151 67.5
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 4.3e-54 214.9 145 70.3
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.3e-54 214.9 151 68.9
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 4.3e-54 214.9 155 67.1
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 7.3e-54 214.2 155 66.5
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 9.5e-54 213.8 145 67.6
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 9.5e-54 213.8 153 67.3
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.6e-53 213.0 151 67.5
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 1.6e-53 213.0 155 64.5
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.6e-53 213.0 151 67.5
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 2.1e-53 212.6 151 66.9
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 3.6e-53 211.8 152 66.4
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 4.7e-53 211.5 155 63.9
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 2.4e-52 209.1 155 63.9
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 2.4e-52 209.1 151 66.9
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.4e-52 209.1 146 67.1
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 2.4e-52 209.1 155 65.2
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 4.0e-52 208.4 155 63.9
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 5.2e-52 208.0 155 63.9
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 5.2e-52 208.0 151 66.2
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 5.2e-52 208.0 155 65.8
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 8.9e-52 207.2 155 63.9
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 8.9e-52 207.2 149 63.8
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 2.0e-51 206.1 155 63.9
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 2.0e-51 206.1 151 63.6
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 4.4e-51 204.9 155 62.6
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 4.4e-51 204.9 155 62.6
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 7.6e-51 204.1 151 63.6
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 9.9e-51 203.8 155 63.2
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 1.3e-50 203.4 155 61.9
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 1.7e-50 203.0 143 65.0
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 4.9e-50 201.4 151 64.9
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 4.9e-50 201.4 145 64.1
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 6.4e-50 201.1 154 61.0
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 8.4e-50 200.7 143 65.0
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 8.4e-50 200.7 143 64.3
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.1e-49 200.3 143 64.3
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.9e-49 199.5 143 64.3
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.9e-49 199.5 143 64.3
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 5.4e-49 198.0 143 65.0
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 5.4e-49 198.0 151 63.6
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 7.1e-49 197.6 150 65.3
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 2.7e-48 195.7 151 63.6
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 2.1e-45 186.0 161 56.5
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.4e-44 183.3 151 61.6
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 6.9e-44 181.0 140 63.6
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 2.0e-43 179.5 149 53.0
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 1.7e-42 176.4 155 56.8
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 2.2e-42 176.0 149 53.7
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.9e-41 172.9 122 68.0
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.4e-41 172.6 152 57.9
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 8.7e-39 164.1 155 51.0
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 1.5e-38 163.3 122 64.8
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 1.9e-38 162.9 120 62.5
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 3.3e-38 162.2 132 58.3
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 5.3e-36 154.8 113 68.1
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 2.2e-34 149.4 113 65.5
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 8.4e-34 147.5 173 47.4
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 3.5e-32 142.1 151 48.3
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 2.8e-29 132.5 145 46.2
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.0e-27 126.3 95 63.2
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 2.6e-27 125.9 124 54.8
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.2e-26 122.9 80 73.8
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 3.2e-25 119.0 77 72.7
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.1e-25 117.9 100 60.0
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 1.5e-22 110.2 75 73.3
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.5e-22 110.2 77 64.9
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.8e-21 105.9 57 77.2
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.8e-21 105.9 57 77.2
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.1e-20 104.0 81 63.0
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 6.9e-20 101.3 78 64.1
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 1.2e-19 100.5 75 62.7
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 4.2e-17 92.0 89 51.7
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 3.9e-15 85.5 149 31.5
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 5.1e-07 58.5 59 52.5


User provided reference genes

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