Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.1e-76 288.9 142 100.0
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 3.1e-75 285.0 142 98.6
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 4.0e-75 284.6 142 98.6
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 3.8e-73 278.1 142 97.9
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 7.1e-72 273.9 142 93.7
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 1.8e-59 232.6 140 76.4
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 1.2e-58 229.9 140 77.9
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 4.5e-58 228.0 140 77.1
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 1.0e-57 226.9 140 73.6
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.2e-57 225.7 140 73.6
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 5.0e-57 224.6 140 74.3
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 6.5e-57 224.2 140 73.6
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 6.5e-57 224.2 140 73.6
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 8.5e-57 223.8 140 73.6
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.4e-56 223.0 140 72.9
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 1.4e-56 223.0 140 73.6
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 1.4e-56 223.0 140 73.6
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.4e-56 223.0 140 75.0
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.9e-56 222.6 140 74.3
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 2.5e-56 222.2 140 72.9
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.5e-56 222.2 140 72.9
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 3.2e-56 221.9 140 71.4
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 4.2e-56 221.5 140 73.6
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 4.2e-56 221.5 140 73.6
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 5.5e-56 221.1 140 72.1
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 9.3e-56 220.3 140 73.6
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 9.3e-56 220.3 140 73.6
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 1.2e-55 219.9 140 72.1
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.1e-55 219.2 140 72.1
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 2.1e-55 219.2 140 74.3
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 4.6e-55 218.0 140 72.1
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.8e-54 216.1 140 71.4
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 1.8e-54 216.1 140 70.0
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.0e-54 215.3 136 73.5
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.9e-54 214.9 136 73.5
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 3.9e-54 214.9 140 68.6
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 5.1e-54 214.5 140 68.6
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 5.1e-54 214.5 139 70.5
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 5.1e-54 214.5 140 70.7
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 5.1e-54 214.5 141 69.5
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 6.7e-54 214.2 143 72.0
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 6.7e-54 214.2 139 70.5
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 6.7e-54 214.2 140 71.4
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 6.7e-54 214.2 140 69.3
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 8.7e-54 213.8 140 67.1
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 8.7e-54 213.8 140 68.6
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 1.1e-53 213.4 140 69.3
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.1e-53 213.4 140 68.6
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 1.9e-53 212.6 140 67.1
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.5e-53 212.2 142 69.0
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 2.5e-53 212.2 140 68.6
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 3.3e-53 211.8 140 69.3
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.3e-53 211.5 140 67.9
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 5.7e-53 211.1 140 67.9
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 7.4e-53 210.7 140 67.1
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 9.7e-53 210.3 140 67.1
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 9.7e-53 210.3 142 67.6
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 1.3e-52 209.9 139 68.3
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.3e-52 209.9 139 68.3
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 1.3e-52 209.9 140 67.1
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 1.3e-52 209.9 140 67.1
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 1.3e-52 209.9 139 69.1
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 1.6e-52 209.5 140 67.1
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 3.7e-52 208.4 140 66.4
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 6.3e-52 207.6 140 66.4
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 6.3e-52 207.6 140 66.4
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 6.3e-52 207.6 140 66.4
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 8.2e-52 207.2 140 65.7
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 8.2e-52 207.2 140 65.7
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 8.2e-52 207.2 140 65.7
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.1e-51 206.8 140 66.4
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 1.4e-51 206.5 140 65.0
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 1.4e-51 206.5 140 65.0
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 2.4e-51 205.7 138 70.3
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 3.1e-51 205.3 140 65.7
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 3.1e-51 205.3 140 65.7
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 3.1e-51 205.3 140 65.7
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 3.1e-51 205.3 140 65.7
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 3.1e-51 205.3 140 65.7
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 3.1e-51 205.3 139 66.9
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 4.1e-51 204.9 140 65.7
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.2e-50 203.4 134 69.4
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 1.5e-50 203.0 140 65.0
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 1.5e-50 203.0 140 65.0
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 2.0e-50 202.6 140 66.4
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 2.0e-50 202.6 140 67.1
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 2.0e-50 202.6 153 64.1
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 2.6e-50 202.2 140 64.3
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 2.6e-50 202.2 140 65.7
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 3.4e-50 201.8 140 62.9
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 3.4e-50 201.8 139 68.3
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 4.5e-50 201.4 142 64.8
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 5.9e-50 201.1 140 64.3
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 5.9e-50 201.1 140 67.9
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 3.8e-49 198.4 139 68.3
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 3.8e-49 198.4 137 67.9
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 5.0e-49 198.0 138 66.7
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 5.0e-49 198.0 136 66.9
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 5.0e-49 198.0 140 65.0
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.1e-48 196.8 141 66.7
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.1e-48 196.8 141 66.7
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 1.4e-48 196.4 138 67.4
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.9e-48 196.1 141 66.0
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 1.9e-48 196.1 137 66.4
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.9e-48 196.1 140 64.3
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 2.5e-48 195.7 132 68.2
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.2e-48 195.3 136 65.4
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 4.2e-48 194.9 191 53.4
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 4.2e-48 194.9 191 53.4
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 1.6e-47 193.0 137 65.7
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.6e-47 193.0 140 67.1
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 2.1e-47 192.6 138 65.9
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.7e-47 192.2 168 55.4
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 2.7e-47 192.2 137 63.5
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 7.9e-47 190.7 138 65.2
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 7.9e-47 190.7 138 63.8
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.0e-46 190.3 139 66.2
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 1.8e-46 189.5 140 62.1
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 3.9e-46 188.3 136 64.7
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 3.9e-46 188.3 138 63.0
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 3.9e-46 188.3 138 66.7
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 1.5e-45 186.4 141 62.4
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 2.6e-45 185.7 138 66.7
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 4.4e-45 184.9 140 62.9
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 4.4e-45 184.9 140 62.1
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 7.4e-45 184.1 134 63.4
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 9.7e-45 183.7 117 71.8
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.7e-44 183.0 128 63.3
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 3.7e-44 181.8 140 60.0
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 8.2e-44 180.6 133 63.9
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 1.8e-43 179.5 189 47.1
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 1.8e-43 179.5 133 63.2
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 6.9e-43 177.6 128 61.7
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.2e-42 176.8 140 60.0
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 4.5e-42 174.9 138 63.0
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 7.7e-42 174.1 140 60.0
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 3.8e-41 171.8 143 57.3
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 8.5e-41 170.6 138 60.9
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 8.5e-41 170.6 140 57.9
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 4.2e-40 168.3 136 59.6
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 5.5e-40 167.9 136 58.8
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 7.2e-40 167.5 108 71.3
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.4e-38 163.3 173 49.7
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 2.3e-38 162.5 138 55.1
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 8.2e-36 154.1 139 54.0
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 1.4e-35 153.3 142 52.8
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 9.1e-35 150.6 138 55.8
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 2.0e-34 149.4 140 50.7
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.8e-33 145.2 135 54.8
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 5.0e-33 144.8 280 33.6
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 8.5e-33 144.1 126 57.1
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 5.5e-32 141.4 125 56.0
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.0e-30 137.1 129 52.7
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.4e-30 136.7 129 52.7
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 9.7e-29 130.6 126 52.4
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 4.0e-22 108.6 71 67.6
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 3.4e-21 105.5 80 56.2
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 1.7e-20 103.2 81 54.3
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 8.3e-20 100.9 65 69.2
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.1e-19 99.0 103 49.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.1e-19 99.0 103 49.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.1e-19 99.0 103 49.5
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 7.7e-18 94.4 117 41.9
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 2.9e-17 92.4 115 44.3
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 5.0e-17 91.7 59 72.9
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 5.0e-17 91.7 59 72.9
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 6.5e-17 91.3 121 43.8
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 4.2e-16 88.6 65 63.1
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.2e-15 87.0 85 51.8
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 2.1e-15 86.3 68 61.8
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 6.1e-15 84.7 77 48.1
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 8.0e-15 84.3 68 61.8
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.3e-14 82.8 65 55.4
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 4.0e-14 82.0 112 42.0
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 1.1e-11 73.9 115 40.0
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 2.0e-10 69.7 120 35.8
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 7.8e-10 67.8 43 67.4
FAN07G2394 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.9e-09 65.9 57 59.6
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 5.6e-08 61.6 40 62.5
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 8.0e-07 57.8 42 59.5
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.0e-06 57.4 39 61.5
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 1.0e-06 57.4 32 78.1
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 2.3e-06 56.2 32 75.0


User provided reference genes

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