Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 6.0e-109 397.5 199 100.0
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.4e-104 381.3 213 92.0
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 1.4e-94 349.7 199 89.4
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.4e-94 349.7 199 89.4
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 1.2e-93 346.7 195 86.7
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.2e-93 346.7 199 88.9
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 3.5e-93 345.1 195 84.1
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.6e-93 344.7 199 88.4
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 3.0e-92 342.0 195 83.6
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.9e-91 339.3 196 87.2
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 3.3e-91 338.6 195 83.6
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 1.6e-90 336.3 195 82.1
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.1e-89 333.6 194 82.5
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 4.0e-89 331.6 196 81.6
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 5.3e-89 331.3 195 82.1
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 6.9e-89 330.9 195 82.1
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 2.0e-88 329.3 196 80.1
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 2.0e-88 329.3 196 80.1
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 9.9e-88 327.0 196 79.6
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 9.9e-88 327.0 199 78.4
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 2.2e-87 325.9 195 80.0
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.9e-87 325.5 194 80.4
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 6.4e-87 324.3 195 82.6
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 8.4e-87 323.9 221 72.4
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 1.1e-86 323.6 195 82.1
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 7.1e-86 320.9 195 79.5
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 2.1e-85 319.3 187 81.3
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 4.6e-85 318.2 196 80.6
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.3e-84 316.6 195 80.5
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.3e-84 316.6 195 80.5
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 1.3e-84 316.6 195 80.5
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 3.0e-84 315.5 195 79.5
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 3.0e-84 315.5 196 76.0
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.9e-84 315.1 186 81.2
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.1e-83 313.5 196 77.0
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 1.5e-83 313.2 194 78.4
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.3e-83 312.0 195 76.9
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 5.6e-83 311.2 194 76.3
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 5.6e-83 311.2 194 76.3
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 7.4e-83 310.8 195 78.5
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 2.1e-82 309.3 196 77.0
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.1e-82 309.3 194 77.3
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 6.2e-82 307.8 195 76.9
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 1.4e-81 306.6 195 78.5
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 3.1e-81 305.4 187 77.5
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.5e-80 303.1 196 75.0
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 1.5e-80 303.1 195 78.5
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 3.4e-80 302.0 194 77.3
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 4.5e-80 301.6 194 74.7
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 7.6e-80 300.8 194 76.8
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 1.3e-79 300.1 196 71.9
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 2.9e-79 298.9 196 74.5
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 3.8e-79 298.5 195 77.4
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 3.8e-79 298.5 223 67.3
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 4.9e-79 298.1 195 77.4
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 6.5e-79 297.7 195 77.4
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 8.4e-79 297.4 195 75.9
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 4.2e-78 295.0 195 70.8
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 5.5e-78 294.7 195 75.4
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 9.3e-78 293.9 195 72.3
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 1.2e-77 293.5 196 71.9
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 1.2e-77 293.5 194 74.7
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.6e-77 293.1 196 72.4
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 3.5e-77 292.0 195 73.3
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 3.5e-77 292.0 194 72.7
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 4.6e-77 291.6 194 74.2
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 1.0e-76 290.4 194 73.7
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 3.0e-76 288.9 194 73.2
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 6.7e-76 287.7 194 72.2
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 8.7e-76 287.3 216 69.0
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 1.1e-75 287.0 194 72.7
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.5e-75 286.6 194 72.7
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 1.9e-75 286.2 195 71.8
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 2.5e-75 285.8 194 73.7
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 4.3e-75 285.0 197 69.0
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 5.7e-75 284.6 195 71.3
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 1.3e-74 283.5 163 83.4
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 2.1e-74 282.7 194 71.1
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 2.8e-74 282.3 196 70.9
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 4.8e-74 281.6 194 71.6
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 4.8e-74 281.6 196 70.4
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 6.3e-74 281.2 194 71.1
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 2.4e-73 279.3 163 82.2
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.2e-72 276.9 195 70.3
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 2.0e-72 276.2 194 71.1
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 3.4e-72 275.4 196 68.9
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 4.5e-72 275.0 194 72.2
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 4.5e-72 275.0 196 66.8
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 5.9e-72 274.6 149 84.6
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 1.0e-71 273.9 163 81.0
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 1.3e-71 273.5 195 72.3
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 1.9e-70 269.6 203 66.0
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 5.5e-70 268.1 150 84.0
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 9.3e-70 267.3 194 69.1
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 4.6e-69 265.0 219 63.5
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 1.0e-68 263.8 196 66.3
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 1.1e-67 260.4 163 76.7
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 3.3e-67 258.8 194 66.0
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 7.4e-67 257.7 196 67.3
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 8.2e-66 254.2 163 78.5
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 2.6e-64 249.2 163 76.1
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 9.1e-57 224.2 195 57.4
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 3.2e-54 215.7 133 75.9
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 4.4e-51 205.3 137 75.9
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 1.7e-50 203.4 129 79.1
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 2.2e-50 203.0 123 82.1
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 1.7e-47 193.4 198 50.5
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.5e-46 188.3 192 55.2
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.5e-38 162.9 173 49.1
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.3e-26 124.0 179 41.9
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.7e-26 123.6 177 38.4
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 1.2e-24 117.5 73 80.8
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 2.0e-24 116.7 73 79.5
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 1.7e-23 113.6 88 65.9
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 8.6e-23 111.3 65 78.5
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.1e-21 106.7 84 63.1
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 3.0e-20 102.8 78 65.4
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 5.4e-17 92.0 131 35.9
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 5.0e-15 85.5 107 41.1
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 7.3e-14 81.6 55 69.1
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 2.3e-12 76.6 73 58.9
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.2e-09 66.2 194 29.4
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 1.2e-08 64.3 46 71.7
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.2e-08 64.3 180 29.4
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 7.8e-08 61.6 167 29.3
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.0e-07 61.2 140 30.0
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 3.0e-07 59.7 139 30.9
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 3.9e-07 59.3 137 31.4
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 5.0e-07 58.9 110 32.7
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 6.6e-07 58.5 112 35.7
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 1.1e-06 57.8 30 83.3
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.5e-06 57.4 154 27.9
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.5e-06 57.4 112 31.2
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.5e-06 56.6 131 31.3
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 2.5e-06 56.6 194 27.3
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 7.3e-06 55.1 134 28.4
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 9.5e-06 54.7 112 31.2
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 9.5e-06 54.7 180 27.8


User provided reference genes

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