Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 7.7e-206 721.5 843 100.0
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 1.8e-202 710.3 843 99.5
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 5.5e-196 688.7 843 96.2
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 4.4e-145 519.6 861 87.1
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 7.3e-132 475.7 725 97.2
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 1.9e-55 221.9 864 71.5
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 5.7e-52 210.3 865 69.8
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 3.5e-49 201.1 249 46.6
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 2.8e-38 164.9 194 45.9
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 1.1e-37 162.9 261 39.8
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.1e-37 162.9 171 49.1
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 1.1e-37 162.9 173 46.8
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 5.2e-37 160.6 171 48.0
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 2.0e-36 158.7 160 50.6
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 7.5e-36 156.8 177 45.8
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 9.8e-36 156.4 181 45.9
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 1.3e-35 156.0 178 48.3
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 3.7e-35 154.5 166 48.8
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 1.4e-34 152.5 239 40.6
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 1.4e-34 152.5 178 44.4
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 1.9e-34 152.1 137 57.7
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 9.2e-34 149.8 163 47.9
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 2.1e-33 148.7 174 46.0
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 3.5e-33 147.9 205 40.5
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 4.6e-33 147.5 252 35.7
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 4.6e-33 147.5 164 46.3
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 6.0e-33 147.1 209 43.1
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 7.8e-33 146.7 168 47.6
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.7e-32 145.6 177 44.1
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 2.3e-32 145.2 168 44.6
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 3.0e-32 144.8 142 49.3
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.1e-31 142.9 172 45.9
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.5e-31 142.5 172 45.9
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 4.3e-31 141.0 150 49.3
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 5.6e-31 140.6 172 45.3
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 7.3e-31 140.2 223 40.8
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 9.5e-31 139.8 179 43.6
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 9.5e-31 139.8 166 42.8
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 1.2e-30 139.4 170 43.5
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 1.6e-30 139.0 177 43.5
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 1.6e-30 139.0 166 47.6
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 2.1e-30 138.7 179 45.3
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 2.1e-30 138.7 157 47.1
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 2.1e-30 138.7 203 39.4
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 2.1e-30 138.7 144 49.3
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 2.8e-30 138.3 179 43.0
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 3.6e-30 137.9 161 49.7
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 4.7e-30 137.5 179 43.0
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 6.2e-30 137.1 158 45.6
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 1.1e-29 136.3 156 49.4
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 1.4e-29 136.0 156 46.8
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 1.8e-29 135.6 158 47.5
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 1.8e-29 135.6 157 48.4
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 2.3e-29 135.2 156 44.9
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 2.3e-29 135.2 170 42.9
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 4.0e-29 134.4 142 48.6
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 4.0e-29 134.4 141 48.2
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 6.8e-29 133.7 217 36.4
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.2e-28 132.9 155 45.8
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 1.5e-28 132.5 171 45.6
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 2.6e-28 131.7 160 46.9
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 2.6e-28 131.7 180 39.4
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 2.6e-28 131.7 172 41.9
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 3.4e-28 131.3 166 44.0
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 1.3e-27 129.4 176 38.6
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 1.3e-27 129.4 145 48.3
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 1.7e-27 129.0 201 35.3
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 3.7e-27 127.9 170 42.4
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 4.9e-27 127.5 156 43.6
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 6.4e-27 127.1 188 42.0
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 1.1e-26 126.3 175 41.1
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.1e-26 126.3 147 42.9
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 1.9e-26 125.6 176 41.5
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 9.2e-26 123.2 148 46.6
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 1.6e-25 122.5 167 41.9
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 1.6e-25 122.5 148 44.6
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 4.6e-25 120.9 160 43.1
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 6.0e-25 120.6 174 41.4
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 1.7e-24 119.0 178 40.4
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 1.7e-24 119.0 164 39.6
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 3.0e-24 118.2 164 40.9
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 3.0e-24 118.2 202 35.1
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 5.1e-24 117.5 150 43.3
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 6.6e-24 117.1 171 38.0
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 8.6e-24 116.7 166 38.6
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.9e-23 115.5 160 41.2
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 2.5e-23 115.2 176 39.2
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 5.6e-23 114.0 145 40.7
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 5.6e-23 114.0 137 46.0
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 9.6e-23 113.2 107 53.3
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 1.6e-22 112.5 253 31.2
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 2.1e-22 112.1 197 39.1
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 4.7e-22 110.9 174 39.7
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 4.7e-22 110.9 242 29.3
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 1.1e-21 109.8 168 36.9
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 4.0e-21 107.8 148 42.6
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 5.2e-21 107.5 214 31.8
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 8.9e-21 106.7 169 37.3
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 3.4e-20 104.8 156 38.5
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 1.7e-19 102.4 147 40.1
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 4.2e-18 97.8 163 33.1
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 4.2e-18 97.8 146 39.0
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 7.1e-18 97.1 184 34.2
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 2.1e-17 95.5 189 31.7
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 4.6e-17 94.4 120 41.7
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 6.0e-17 94.0 175 32.0
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.3e-16 92.8 163 32.5
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 1.3e-16 92.8 166 31.9
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 6.6e-16 90.5 113 43.4
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 5.6e-15 87.4 234 27.8
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 6.2e-14 84.0 121 38.0
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 8.1e-14 83.6 188 26.1
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 1.1e-13 83.2 193 30.6
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 3.1e-13 81.6 236 59.3
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 2.6e-12 78.6 104 42.3
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 4.4e-12 77.8 242 54.1
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 5.8e-12 77.4 188 29.3
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 1.7e-11 75.9 149 33.6
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 3.8e-11 74.7 247 46.6
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 6.4e-11 73.9 187 29.4
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 1.4e-10 72.8 119 34.5
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 2.4e-10 72.0 122 37.7
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 4.2e-10 71.2 140 25.0
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 4.2e-10 71.2 116 36.2
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 5.4e-10 70.9 143 28.0
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 1.2e-09 69.7 100 34.0
COL.COLO4_22429 Corchorus olitorius HOM05D000173 ORTHO05D003903 1.2e-09 69.7 247 23.9
Carub.0001s1351 Capsella rubella HOM05D004824 ORTHO05D003903 3.5e-09 68.2 101 39.6
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 6.0e-09 67.4 156 28.8
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 6.0e-09 67.4 227 56.8
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 1.0e-08 66.6 108 36.1
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.3e-08 66.2 93 36.6
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 2.3e-08 65.5 132 34.1
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 2.3e-08 65.5 101 37.6
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 3.0e-08 65.1 71 47.9
SHI35543 Sapria himalayana HOM05D008459 ORTHO05D003903 6.6e-08 63.9 225 25.8
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 6.6e-08 63.9 143 28.7
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 8.7e-08 63.5 143 26.6
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 1.1e-07 63.2 148 24.3
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 2.5e-07 62.0 82 42.7
RcHm_v2.0_Chr3g0484571 Rosa chinensis HOM05D007893 ORTHO05D010042 3.3e-07 61.6 140 24.3
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.3e-07 61.6 139 25.9
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 7.3e-07 60.5 107 36.4
Glyma.18G262450 Glycine max HOM05D004824 ORTHO05D003903 7.3e-07 60.5 48 58.3
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 7.3e-07 60.5 139 27.3
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 1.3e-06 59.7 116 35.3
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 1.3e-06 59.7 136 23.5
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 1.6e-06 59.3 116 35.3
MBI18_g42841_MAGBIO Magnolia biondii HOM05D007893 ORTHO05D010042 2.1e-06 58.9 139 23.7
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 3.6e-06 58.2 116 35.3
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 3.6e-06 58.2 116 35.3
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 3.6e-06 58.2 116 35.3
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 3.6e-06 58.2 59 47.5
Prupe.7G039700 Prunus persica HOM05D006858 ORTHO05D008767 4.8e-06 57.8 173 24.9
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 6.2e-06 57.4 154 26.0
SHI28137 Sapria himalayana HOM05D008459 ORTHO05D003903 8.1e-06 57.0 75 41.3
SHI51070 Sapria himalayana HOM05D008459 ORTHO05D003903 8.1e-06 57.0 214 25.2


User provided reference genes

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