Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 9.7e-289 996.1 508 100.0
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.1e-279 964.5 510 94.5
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.2e-275 952.6 509 93.5
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 2.3e-274 948.3 509 93.3
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.8e-274 946.8 509 93.1
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.2e-273 946.0 509 93.1
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 1.9e-268 928.7 509 91.2
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 8.3e-256 886.7 507 86.6
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 7.8e-246 853.6 509 84.7
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 2.2e-232 808.9 508 79.5
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 2.2e-232 808.9 507 80.9
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 4.9e-232 807.7 515 79.2
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 2.7e-230 802.0 501 80.4
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 4.6e-230 801.2 506 79.4
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 3.0e-229 798.5 508 79.9
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.9e-228 795.8 514 78.6
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 2.8e-227 792.0 504 78.8
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.4e-226 789.6 511 78.3
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 2.0e-225 785.8 508 77.8
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 5.8e-225 784.3 501 78.6
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 5.8e-225 784.3 509 76.8
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 6.4e-224 780.8 514 76.5
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.4e-223 779.6 504 78.0
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 5.4e-223 777.7 505 78.0
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 5.4e-223 777.7 508 77.2
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.6e-222 776.2 514 76.1
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 4.6e-222 774.6 517 75.6
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 3.0e-221 771.9 500 76.6
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 1.5e-220 769.6 513 77.2
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 4.8e-219 764.6 501 77.6
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.8e-218 762.7 515 75.3
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 9.0e-218 760.4 529 74.5
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.5e-217 759.6 531 74.0
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.5e-217 759.6 484 79.1
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 5.8e-217 757.7 508 75.8
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 7.6e-217 757.3 517 74.7
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 4.9e-216 754.6 512 75.2
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 1.9e-215 752.7 508 74.6
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 3.2e-215 751.9 508 74.6
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 9.3e-215 750.4 481 78.4
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.0e-214 747.7 413 91.5
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 2.3e-213 745.7 511 75.7
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.9e-212 742.7 513 73.7
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 2.5e-212 742.3 513 74.9
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.3e-212 741.9 495 77.4
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 4.3e-212 741.5 498 76.1
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 1.3e-211 740.0 515 73.2
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.3e-211 740.0 513 73.3
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 2.1e-211 739.2 510 74.5
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.8e-211 738.8 503 75.0
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 6.2e-211 737.6 513 73.1
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 1.8e-210 736.1 512 73.0
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 3.1e-210 735.3 523 73.2
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 3.1e-210 735.3 512 73.4
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 9.0e-210 733.8 505 74.5
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.7e-208 729.6 510 73.3
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 4.9e-208 728.0 500 72.6
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 1.4e-207 726.5 513 73.5
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.9e-207 726.1 497 73.4
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 4.2e-207 724.9 526 70.7
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 9.3e-207 723.8 509 73.1
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 9.3e-207 723.8 466 78.5
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 3.9e-205 718.4 455 80.0
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 5.1e-205 718.0 493 75.5
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 8.7e-205 717.2 515 72.4
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.1e-204 716.8 503 71.6
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.9e-204 716.1 500 71.8
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 3.3e-204 715.3 513 73.5
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 3.3e-204 715.3 545 68.6
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 9.0e-202 707.2 546 68.1
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 7.6e-201 704.1 514 72.2
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.0e-200 703.7 502 70.5
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 4.9e-200 701.4 507 71.4
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 1.9e-199 699.5 503 70.2
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 7.1e-199 697.6 495 71.5
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 7.1e-199 697.6 495 71.5
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 7.1e-199 697.6 514 69.8
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.6e-198 696.4 591 64.5
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.7e-198 695.7 501 69.9
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 4.8e-195 684.9 517 68.5
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 4.1e-194 681.8 511 68.7
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 4.1e-194 681.8 501 69.7
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 5.3e-194 681.4 478 72.6
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 9.0e-194 680.6 512 69.1
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 3.8e-192 675.2 431 80.0
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.4e-191 673.3 496 71.4
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 2.1e-190 669.5 495 69.3
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 6.3e-187 657.9 504 66.9
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.5e-185 653.3 462 72.3
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.5e-185 653.3 508 67.1
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 4.5e-185 651.7 510 66.9
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.3e-184 650.2 510 66.1
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 1.7e-184 649.8 462 71.9
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 7.2e-183 644.4 516 64.5
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 1.4e-181 640.2 503 67.0
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 2.6e-180 636.0 519 64.7
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 6.1e-166 588.2 430 69.8
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 8.8e-165 584.3 472 66.1
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 3.7e-163 578.9 509 60.9
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 2.2e-160 569.7 450 66.2
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.6e-158 562.4 515 57.9
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 4.7e-158 562.0 545 54.5
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 2.5e-151 539.7 376 74.2
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 7.2e-151 538.1 485 59.2
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 6.1e-150 535.0 476 59.9
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 3.0e-149 532.7 493 58.4
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 2.6e-148 529.6 341 78.3
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.2e-147 526.6 502 57.2
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 3.7e-147 525.8 365 76.2
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 3.6e-142 509.2 363 74.4
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.9e-138 496.9 392 68.1
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 5.4e-138 495.4 365 71.5
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 9.2e-138 494.6 360 73.9
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 3.3e-135 486.1 498 54.0
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 7.3e-135 485.0 484 54.1
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.6e-134 483.8 469 56.3
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 4.7e-134 482.3 521 51.4
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 4.1e-130 469.2 292 78.8
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 8.1e-126 454.9 495 51.1
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 2.9e-123 446.4 507 48.9
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 3.9e-120 436.0 357 65.8
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 4.3e-119 432.6 337 70.0
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 6.0e-113 412.1 413 57.9
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 4.3e-103 379.4 465 46.2
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 6.4e-99 365.5 307 65.1
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.3e-96 357.1 468 48.3
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.4e-95 352.1 166 99.4
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.4e-93 347.8 365 55.9
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 8.4e-83 312.0 221 69.7
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.2e-81 308.1 230 71.3
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.6e-81 307.8 196 77.0
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.6e-73 281.2 145 89.7
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.0e-72 278.5 182 73.6
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.5e-68 264.6 147 84.4
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.4e-68 263.5 315 50.5
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.6e-65 253.4 147 81.6
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 6.3e-62 242.7 397 38.3
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.1e-61 241.9 205 65.4
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.3e-54 218.4 304 40.1
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 4.0e-48 196.8 164 61.0
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 2.4e-45 187.6 331 38.1
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 7.2e-42 176.0 128 68.8
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 8.0e-41 172.6 193 53.9
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.1e-37 162.2 100 74.0
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.6e-31 141.0 214 45.3
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 3.2e-29 134.0 68 89.7
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.3e-26 124.0 334 32.0
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 7.0e-21 106.3 78 64.1
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 1.2e-15 89.0 65 67.7
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.3e-14 85.5 45 88.9
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 4.9e-14 83.6 72 61.1
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 4.6e-12 77.0 38 92.1
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 5.6e-10 70.1 64 59.4
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.1e-09 68.2 44 63.6
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.4e-08 65.5 58 50.0
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.8e-07 60.1 80 47.5


User provided reference genes

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