Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 9.1e-99 363.6 188 100.0
FAN23G1103 Fragaria x ananassa HOM05D016072 ORTHO05D199226 5.2e-70 268.1 140 100.0
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.3e-49 200.3 100 99.0
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 5.8e-45 184.9 91 98.9
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.6e-39 166.8 115 76.5
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.6e-39 166.8 115 76.5
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 8.3e-36 154.5 84 91.7
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.1e-33 145.2 71 100.0
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 5.1e-33 145.2 71 100.0
FAN03G2731 Fragaria x ananassa HOM05D016072 ORTHO05D006239 3.3e-24 115.9 57 98.2
FAN12G3953 Fragaria x ananassa HOM05D016072 ORTHO05D006239 3.3e-24 115.9 57 98.2
FAN21G1940 Fragaria x ananassa HOM05D016072 ORTHO05D006239 3.3e-24 115.9 57 98.2
FAN23G0611 Fragaria x ananassa HOM05D016072 ORTHO05D006239 3.3e-24 115.9 57 98.2
FAN17G0911 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.6e-23 113.6 57 96.5
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.2e-22 108.6 54 98.1
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.5e-21 107.1 56 96.4
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.1e-19 98.2 48 100.0
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.1e-19 98.2 48 100.0
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 7.1e-19 98.2 48 100.0
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 7.1e-19 98.2 48 100.0
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 1.6e-18 97.1 48 97.9
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.6e-18 97.1 48 97.9
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.6e-18 97.1 48 97.9
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 1.6e-18 97.1 48 97.9
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 5.1e-17 92.0 48 91.7
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 9.6e-16 87.8 48 91.7
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 2.8e-15 86.3 48 89.6
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 2.8e-15 86.3 48 89.6
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 3.6e-15 85.9 48 89.6
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 1.8e-14 83.6 48 85.4
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 2.4e-14 83.2 48 83.3
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 4.0e-14 82.4 48 85.4
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 4.0e-14 82.4 48 85.4
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 9.0e-14 81.3 89 58.4
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 1.2e-13 80.9 48 83.3
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 1.5e-13 80.5 48 81.2
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 1.5e-13 80.5 48 83.3
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 2.0e-13 80.1 48 83.3
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 2.0e-13 80.1 48 83.3
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.0e-13 80.1 48 81.2
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 2.0e-13 80.1 56 76.8
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 2.0e-13 80.1 48 81.2
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 2.0e-13 80.1 48 83.3
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 3.4e-13 79.3 67 67.2
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 3.4e-13 79.3 48 83.3
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.4e-13 79.3 48 83.3
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 3.4e-13 79.3 48 81.2
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 4.5e-13 79.0 48 83.3
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 5.8e-13 78.6 48 81.2
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 5.8e-13 78.6 48 85.4
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 5.8e-13 78.6 48 83.3
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 7.6e-13 78.2 48 81.2
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 7.6e-13 78.2 48 81.2
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 7.6e-13 78.2 48 79.2
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 9.9e-13 77.8 48 81.2
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 9.9e-13 77.8 48 81.2
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 9.9e-13 77.8 48 79.2
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 9.9e-13 77.8 48 79.2
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 9.9e-13 77.8 48 81.2
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 9.9e-13 77.8 48 81.2
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.3e-12 77.4 48 79.2
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 1.3e-12 77.4 48 81.2
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 1.7e-12 77.0 48 81.2
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 2.2e-12 76.6 48 79.2
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 2.2e-12 76.6 48 79.2
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 2.2e-12 76.6 48 79.2
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 2.9e-12 76.3 48 79.2
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 2.9e-12 76.3 48 79.2
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 2.9e-12 76.3 48 79.2
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 2.9e-12 76.3 48 81.2
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 4.9e-12 75.5 48 77.1
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 6.4e-12 75.1 48 77.1
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 6.4e-12 75.1 48 77.1
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 6.4e-12 75.1 48 77.1
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 6.4e-12 75.1 48 77.1
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 6.4e-12 75.1 67 58.2
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 6.4e-12 75.1 48 77.1
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 8.4e-12 74.7 48 75.0
FAN21G3382 Fragaria x ananassa HOM05D013622 ORTHO05D208262 8.4e-12 74.7 46 80.4
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 8.4e-12 74.7 48 77.1
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.1e-11 74.3 67 59.7
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.1e-11 74.3 67 59.7
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 1.4e-11 73.9 48 75.0
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 1.4e-11 73.9 48 75.0
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 1.4e-11 73.9 48 70.8
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 1.9e-11 73.6 48 75.0
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 1.9e-11 73.6 48 72.9
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 1.9e-11 73.6 48 77.1
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 1.9e-11 73.6 48 77.1
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 2.4e-11 73.2 48 72.9
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 3.2e-11 72.8 48 77.1
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 4.2e-11 72.4 48 72.9
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 4.2e-11 72.4 48 72.9
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 4.2e-11 72.4 48 75.0
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 5.4e-11 72.0 48 72.9
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 5.4e-11 72.0 48 75.0
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 5.4e-11 72.0 48 75.0
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 7.1e-11 71.6 48 77.1
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 9.3e-11 71.2 48 68.8
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.2e-10 70.9 48 70.8
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.2e-10 70.9 48 72.9
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.2e-10 70.9 48 72.9
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 2.1e-10 70.1 48 75.0
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 2.1e-10 70.1 48 68.8
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 2.1e-10 70.1 48 72.9
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 2.1e-10 70.1 48 75.0
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 2.7e-10 69.7 48 72.9
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 3.5e-10 69.3 48 70.8
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 3.5e-10 69.3 48 68.8
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 3.5e-10 69.3 48 68.8
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 3.5e-10 69.3 48 68.8
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 4.6e-10 68.9 48 68.8
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 4.6e-10 68.9 48 72.9
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 7.9e-10 68.2 48 68.8
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 7.9e-10 68.2 48 68.8
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 1.0e-09 67.8 48 68.8
FAN19G0966 Fragaria x ananassa HOM05D013622 ORTHO05D207874 1.3e-09 67.4 37 81.1
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.3e-09 66.6 48 66.7
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 2.3e-09 66.6 48 68.8
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 3.9e-09 65.9 48 66.7
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 6.7e-09 65.1 47 68.1
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 6.7e-09 65.1 47 68.1
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 8.7e-09 64.7 42 76.2
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 8.7e-09 64.7 42 76.2
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.9e-08 63.5 48 64.6


User provided reference genes

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