Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.3e-196 687.6 365 100.0
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 7.7e-179 630.6 344 98.3
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.7e-179 630.6 344 98.3
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.7e-179 630.6 344 98.3
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 3.1e-172 608.6 344 93.3
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.5e-161 573.2 398 81.7
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.0e-154 550.4 300 99.0
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 2.8e-152 542.3 327 83.8
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.3e-146 523.5 300 96.3
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 4.4e-142 508.4 325 79.1
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 8.3e-141 504.2 324 79.3
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 8.3e-141 504.2 325 79.7
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.1e-140 503.8 330 78.2
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 9.2e-140 500.7 324 79.0
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 3.0e-138 495.7 326 76.7
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 7.3e-137 491.1 324 75.9
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 1.6e-136 490.0 327 75.8
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 4.0e-135 485.3 327 77.4
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 2.6e-134 482.6 325 76.9
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 5.8e-134 481.5 325 75.1
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 4.1e-132 475.3 324 76.5
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.6e-131 473.4 322 76.1
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 1.6e-131 473.4 326 74.2
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 4.6e-131 471.9 322 74.5
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.0e-130 470.7 327 74.9
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 3.9e-130 468.8 322 74.2
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.9e-129 466.5 325 75.7
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 5.6e-129 464.9 375 65.3
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 9.6e-129 464.2 322 73.6
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 1.2e-126 457.2 335 71.0
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 2.0e-126 456.4 326 73.0
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 4.4e-126 455.3 380 64.7
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 9.9e-126 454.1 328 69.5
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.7e-125 453.4 325 71.4
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 3.5e-123 445.7 325 70.8
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 4.6e-123 445.3 325 73.2
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 6.0e-123 444.9 327 69.7
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 3.0e-122 442.6 325 70.2
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 8.7e-122 441.0 324 71.6
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 8.7e-122 441.0 323 69.3
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 2.5e-121 439.5 325 69.5
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 5.6e-121 438.3 316 73.1
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 7.3e-121 438.0 326 72.1
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 2.1e-120 436.4 325 68.6
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 3.6e-120 435.6 323 69.0
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.1e-119 434.1 324 71.0
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 4.0e-119 432.2 326 68.7
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 6.9e-119 431.4 324 70.1
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 3.4e-118 429.1 325 68.9
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 7.6e-118 427.9 324 71.9
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 7.6e-118 427.9 318 70.4
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 9.9e-118 427.6 324 71.9
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 1.3e-117 427.2 325 69.5
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 2.2e-117 426.4 326 70.2
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 2.2e-117 426.4 324 71.9
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 2.9e-117 426.0 324 71.6
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 2.9e-117 426.0 282 76.2
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 3.8e-117 425.6 326 70.2
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 4.9e-117 425.2 325 68.6
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 8.4e-117 424.5 327 70.0
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 3.2e-116 422.5 369 61.2
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 3.2e-116 422.5 330 68.2
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 3.2e-116 422.5 323 70.9
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 4.2e-116 422.2 325 67.1
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 7.1e-116 421.4 325 70.8
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 9.3e-116 421.0 323 68.4
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 9.3e-116 421.0 325 70.5
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 1.2e-115 420.6 321 66.4
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 3.5e-115 419.1 325 67.7
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 4.6e-115 418.7 332 67.2
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 5.1e-114 415.2 325 66.8
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 6.6e-114 414.8 326 66.9
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 8.7e-114 414.5 325 67.1
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 2.5e-113 412.9 327 69.1
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 1.3e-112 410.6 330 66.7
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 3.6e-112 409.1 324 69.1
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.4e-111 407.1 326 68.7
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 1.4e-111 407.1 326 68.7
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.8e-111 406.8 326 68.7
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 2.4e-111 406.4 326 63.5
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 3.4e-110 402.5 323 65.6
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 3.4e-110 402.5 320 65.3
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 9.9e-110 401.0 326 66.3
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 3.8e-109 399.1 328 67.1
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 6.4e-109 398.3 330 64.8
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 8.4e-109 397.9 327 67.9
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 2.4e-108 396.4 327 64.5
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 2.4e-108 396.4 326 67.8
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 3.2e-108 396.0 348 62.1
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 5.4e-108 395.2 333 64.0
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 3.0e-106 389.4 354 59.9
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.9e-105 386.7 282 70.6
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 3.3e-105 386.0 329 64.7
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.8e-103 380.2 338 59.8
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 3.1e-103 379.4 284 69.4
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 3.4e-102 375.9 331 63.1
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.8e-101 372.5 333 59.5
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 3.8e-101 372.5 339 61.9
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 8.4e-101 371.3 333 59.2
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 5.5e-100 368.6 291 67.7
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 5.1e-98 362.1 324 60.5
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 3.3e-97 359.4 288 65.3
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.7e-96 355.9 255 73.7
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.3e-93 347.4 333 56.5
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.9e-92 343.6 331 61.3
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 5.5e-92 342.0 324 58.3
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.4e-82 310.8 353 56.1
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.1e-79 301.2 331 55.0
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 1.2e-78 297.7 268 61.2
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 1.8e-71 273.9 209 67.9
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 2.1e-67 260.4 140 93.6
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 2.2e-64 250.4 148 94.6
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 3.1e-55 219.9 127 85.0
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 4.4e-49 199.5 124 79.8
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 1.4e-47 194.5 349 40.1
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 8.6e-45 185.3 340 38.2
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 7.8e-38 162.2 250 43.6
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 9.8e-33 145.2 346 32.4
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 2.0e-30 137.5 104 71.2
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 4.3e-28 129.8 88 75.0
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.4e-25 120.2 93 67.7
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.9e-23 114.4 81 72.8
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.7e-22 110.5 92 65.2
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 3.3e-20 103.6 152 42.1
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.5e-09 68.2 87 41.4


User provided reference genes

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