Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 8.7e-210 733.4 376 100.0
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 5.3e-191 671.0 376 93.1
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 3.9e-178 628.2 377 89.7
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 5.7e-169 597.8 377 86.2
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.9e-156 556.2 331 89.7
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 4.5e-150 535.0 370 77.0
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 7.7e-150 534.3 370 77.6
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 1.6e-147 526.6 375 75.7
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 2.9e-128 462.6 368 67.7
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 7.1e-127 458.0 364 67.3
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 2.1e-126 456.4 371 68.7
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 6.0e-126 454.9 364 67.0
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 3.6e-123 445.7 402 61.7
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 6.2e-123 444.9 377 64.5
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 2.3e-122 443.0 366 64.5
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 8.9e-122 441.0 369 64.0
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 4.9e-120 435.3 366 63.7
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 1.1e-119 434.1 364 64.8
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 1.2e-118 430.6 374 62.3
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 2.1e-118 429.9 367 64.0
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 2.7e-118 429.5 379 63.9
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 4.6e-118 428.7 371 64.4
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 1.3e-117 427.2 364 64.8
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 3.0e-117 426.0 364 64.3
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 3.9e-117 425.6 359 64.1
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 1.1e-116 424.1 368 63.6
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 1.1e-116 424.1 376 61.7
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 7.3e-116 421.4 361 64.5
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 1.2e-115 420.6 364 63.5
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 2.8e-115 419.5 369 62.3
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 3.6e-115 419.1 368 63.0
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 6.2e-115 418.3 376 62.2
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 1.4e-114 417.2 377 61.5
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 1.8e-114 416.8 374 64.4
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 2.4e-114 416.4 370 62.7
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 5.2e-114 415.2 373 60.9
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 2.6e-113 412.9 371 61.2
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 3.4e-113 412.5 373 62.5
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 7.6e-113 411.4 373 61.7
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 8.4e-112 407.9 378 60.3
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 8.4e-112 407.9 378 60.6
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 3.2e-111 406.0 371 61.7
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 3.2e-111 406.0 371 61.2
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 4.2e-111 405.6 331 65.9
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 7.1e-111 404.8 370 61.6
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 2.7e-110 402.9 363 60.3
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 2.7e-110 402.9 360 62.8
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 6.0e-110 401.7 371 61.2
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 7.8e-110 401.4 384 60.2
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 7.8e-110 401.4 374 60.4
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 1.0e-109 401.0 368 59.5
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 1.3e-109 400.6 384 60.2
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 1.3e-109 400.6 366 59.3
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.7e-109 400.2 365 62.7
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 3.0e-109 399.4 374 61.5
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 3.9e-109 399.1 370 61.1
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 5.1e-109 398.7 373 61.1
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 5.1e-109 398.7 374 60.4
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 1.1e-108 397.5 375 59.7
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 3.3e-108 396.0 355 60.8
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 4.3e-108 395.6 374 58.8
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 7.3e-108 394.8 369 60.2
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 7.3e-108 394.8 369 60.2
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.3e-107 394.0 366 60.7
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 6.2e-107 391.7 369 59.3
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 8.1e-107 391.3 369 59.1
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 1.1e-106 391.0 396 55.1
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 5.3e-106 388.7 375 55.5
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 7.6e-105 384.8 363 59.8
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 1.3e-104 384.0 387 57.4
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 1.3e-104 384.0 370 61.4
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 3.8e-104 382.5 333 63.1
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 5.4e-103 378.6 374 58.0
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.7e-102 376.3 380 58.7
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 2.7e-102 376.3 363 60.3
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 2.7e-102 376.3 328 63.1
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 6.0e-102 375.2 363 60.6
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 5.6e-100 368.6 339 61.9
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 7.3e-100 368.2 350 59.1
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 1.7e-96 357.1 366 54.9
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 6.0e-94 348.6 383 55.4
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 2.5e-92 343.2 382 52.9
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 4.3e-92 342.4 369 56.1
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 1.6e-91 340.5 290 63.4
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 9.0e-90 334.7 365 52.9
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 8.4e-88 328.2 291 63.2
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 1.9e-87 327.0 382 51.8
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 1.1e-84 317.8 293 61.8
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 6.9e-82 308.5 427 45.9
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 2.6e-81 306.6 298 58.7
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 5.9e-81 305.4 356 52.2
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 1.9e-79 300.4 378 50.3
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 3.2e-79 299.7 285 61.4
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 1.1e-76 291.2 249 63.5
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 9.0e-74 281.6 364 50.5
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 1.6e-70 270.8 258 57.8
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 3.6e-70 269.6 262 59.5
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 3.6e-70 269.6 264 59.8
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 3.0e-69 266.5 378 44.4
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 1.7e-67 260.8 417 41.7
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 2.5e-63 246.9 363 44.1
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 9.4e-63 245.0 350 44.0
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 5.3e-58 229.2 207 58.0
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 1.0e-56 224.9 310 44.8
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 1.5e-55 221.1 278 48.2
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 3.6e-54 216.5 198 63.1
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 4.4e-52 209.5 213 57.7
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 2.8e-51 206.8 371 38.8
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 3.6e-46 189.9 271 47.2
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 1.7e-32 144.4 109 67.9
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 9.2e-26 122.1 102 59.8
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 1.2e-25 121.7 99 63.6
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 1.0e-24 118.6 104 60.6
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 8.6e-24 115.5 95 63.2
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 1.5e-23 114.8 104 59.6
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 5.8e-20 102.8 297 30.3
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.7e-19 101.3 59 78.0
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 2.1e-14 84.3 287 27.9
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 3.1e-13 80.5 226 30.1
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 2.4e-10 70.9 83 51.8
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 2.7e-09 67.4 176 30.7
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 3.5e-09 67.0 73 53.4
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 3.5e-09 67.0 73 53.4
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 2.3e-08 64.3 45 68.9
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 1.5e-07 61.6 186 28.0
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 2.1e-06 57.8 163 27.0
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 6.2e-06 56.2 150 27.3


User provided reference genes

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