Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2303 Fragaria x ananassa HOM05D007466 ORTHO05D002463 8.1e-73 276.9 136 100.0
FvH4_6g26390 Fragaria vesca HOM05D007466 ORTHO05D002463 2.6e-71 271.9 136 97.8
FAN02G3170 Fragaria x ananassa HOM05D007466 ORTHO05D002463 4.9e-70 267.7 136 96.3
FAN05G5633 Fragaria x ananassa HOM05D007466 ORTHO05D002463 6.4e-70 267.3 136 96.3
MD09G1246300 Malus domestica HOM05D007466 ORTHO05D002463 4.7e-57 224.6 133 77.4
Sabra17G0024500 Salix brachista HOM05D007466 ORTHO05D002463 8.1e-57 223.8 133 78.9
Atru.chr6.3156 Acer truncatum HOM05D007466 ORTHO05D002463 5.2e-56 221.1 134 75.4
Prupe.3G131400 Prunus persica HOM05D007466 ORTHO05D002463 2.0e-55 219.2 134 76.9
Potri.017G037600 Populus trichocarpa HOM05D007466 ORTHO05D002463 3.4e-55 218.4 135 75.6
QL08p033690 Quercus lobata HOM05D007466 ORTHO05D002463 3.4e-55 218.4 134 73.1
Dinv18525 Davidia involucrata HOM05D007466 ORTHO05D002463 1.3e-54 216.5 135 75.6
CSS0032012 Camellia sinensis var. sinensis HOM05D007466 ORTHO05D002463 1.7e-54 216.1 135 74.1
Actinidia32076 Actinidia chinensis HOM05D007466 ORTHO05D002463 2.2e-54 215.7 135 73.3
Prupe.3G219500 Prunus persica HOM05D007466 ORTHO05D002463 2.2e-54 215.7 132 76.5
CiPaw.04G117300 Carya illinoinensis HOM05D007466 ORTHO05D002463 3.2e-53 211.8 134 75.4
Cfa014433 Carpinus fangiana HOM05D007466 ORTHO05D002463 9.3e-53 210.3 134 73.1
MD17G1239100 Malus domestica HOM05D007466 ORTHO05D002463 2.1e-52 209.1 133 72.2
RcHm_v2.0_Chr2g0159951 Rosa chinensis HOM05D007466 ORTHO05D002463 4.6e-52 208.0 134 74.6
FAN05G5573 Fragaria x ananassa HOM05D007466 ORTHO05D002463 1.3e-51 206.5 134 73.1
Gohir.D12G159200 Gossypium hirsutum HOM05D007466 ORTHO05D002463 1.3e-51 206.5 134 72.4
Gorai.008G172300 Gossypium raimondii HOM05D007466 ORTHO05D002463 1.3e-51 206.5 134 72.4
FAN14G1602 Fragaria x ananassa HOM05D007466 ORTHO05D002463 1.7e-51 206.1 134 73.9
FvH4_6g43480 Fragaria vesca HOM05D007466 ORTHO05D002463 2.3e-51 205.7 134 73.9
Manes.13G072400 Manihot esculenta HOM05D007466 ORTHO05D002463 2.3e-51 205.7 134 70.1
Gohir.A12G156100 Gossypium hirsutum HOM05D007466 ORTHO05D002463 3.0e-51 205.3 134 70.9
Lsat_1_v5_gn_5_103881 Lactuca sativa HOM05D007466 ORTHO05D002463 3.0e-51 205.3 136 69.9
Ciclev10017724m.g Citrus clementina HOM05D007466 ORTHO05D002463 3.9e-51 204.9 135 70.4
Haze_12891 Corylus avellana HOM05D007466 ORTHO05D002463 6.6e-51 204.1 134 70.1
DCAR_021185 Daucus carota HOM05D007466 ORTHO05D002463 6.6e-51 204.1 135 72.6
FAN09G4112 Fragaria x ananassa HOM05D007466 ORTHO05D002463 1.1e-50 203.4 134 71.6
Duzib251G0094 Durio zibethinus HOM05D007466 ORTHO05D002463 2.5e-50 202.2 134 69.4
GSVIVG01030614001 Vitis vinifera HOM05D007466 ORTHO05D002463 2.5e-50 202.2 134 68.7
Phvul.005G113900 Phaseolus vulgaris HOM05D007466 ORTHO05D002463 3.3e-50 201.8 132 69.7
TWI36G1433 Tripterygium wilfordii HOM05D007466 ORTHO05D002463 3.3e-50 201.8 134 70.1
VMungo1080G0180 Vigna mungo HOM05D007466 ORTHO05D002463 3.3e-50 201.8 135 68.9
Lj3g0019012 Lotus japonicus HOM05D007466 ORTHO05D002463 7.3e-50 200.7 134 70.9
Ca_01590_v3 Cicer arietinum L. HOM05D007466 ORTHO05D002463 1.3e-49 199.9 135 65.9
MD01G1026100 Malus domestica HOM05D007466 ORTHO05D002463 2.8e-49 198.7 135 68.9
CANSAT64G0630 Cannabis sativa HOM05D007466 ORTHO05D002463 4.8e-49 198.0 139 69.1
FAN02G1346 Fragaria x ananassa HOM05D007466 ORTHO05D002463 4.8e-49 198.0 134 70.9
HanXRQChr14g0459021 Helianthus annuus HOM05D007466 ORTHO05D002463 8.1e-49 197.2 135 67.4
Rhsim06G0158700 Rhododendron simsii HOM05D007466 ORTHO05D002463 8.1e-49 197.2 134 72.4
EL10Ac2g04092 Beta vulgaris HOM05D007466 ORTHO05D002463 1.1e-48 196.8 134 66.4
Oeu048075.1 Olea europaea HOM05D007466 ORTHO05D002463 1.1e-48 196.8 134 65.7
arahy.Tifrunner.gnm1.ann1.N3UINY Arachis hypogaea HOM05D007466 ORTHO05D002463 1.4e-48 196.4 134 67.9
COL.COLO4_27678 Corchorus olitorius HOM05D007466 ORTHO05D002463 1.4e-48 196.4 138 68.1
Dinv02746 Davidia involucrata HOM05D007466 ORTHO05D002463 1.4e-48 196.4 124 75.0
Lalb_Chr22g0349591 Lupinus albus HOM05D007466 ORTHO05D002463 2.4e-48 195.7 136 66.9
Medtr2g088760 Medicago truncatula HOM05D007466 ORTHO05D002463 2.4e-48 195.7 134 68.7
Eucgr.A01722 Eucalyptus grandis HOM05D007466 ORTHO05D002463 3.1e-48 195.3 135 65.9
Nitab4.5_0005894g0010 Nicotiana tabacum HOM05D007466 ORTHO05D002463 5.3e-48 194.5 134 64.9
Cc00_g30040 Coffea canephora HOM05D007466 ORTHO05D002463 1.2e-47 193.4 135 65.2
Ah.10g035420 Amaranthus hybridus HOM05D007466 ORTHO05D002463 2.0e-47 192.6 134 63.4
Thecc.02G312400 Theobroma cacao HOM05D007466 ORTHO05D002463 2.0e-47 192.6 134 67.2
Psat2g121080 Pisum sativum HOM05D007466 ORTHO05D002463 5.8e-47 191.0 134 66.4
CSS0024645 Camellia sinensis var. sinensis HOM05D007466 ORTHO05D002463 9.9e-47 190.3 118 75.4
CAN.G921.12 Capsicum annuum HOM05D007466 ORTHO05D002463 9.9e-47 190.3 132 65.2
TPR.G4193 Trifolium pratense HOM05D007466 ORTHO05D002463 2.2e-46 189.1 134 65.7
PGR042G2713 Punica granatum HOM05D007466 ORTHO05D002463 3.8e-46 188.3 134 64.9
Solyc07g052500.1 Solanum lycopersicum HOM05D007466 ORTHO05D002463 1.1e-45 186.8 134 63.4
Psat5g265200 Pisum sativum HOM05D007466 ORTHO05D002463 5.4e-45 184.5 130 66.2
Sp4g14720 Schrenkiella parvula HOM05D007466 ORTHO05D002463 9.3e-45 183.7 135 62.2
BraA05t20253Z Brassica rapa HOM05D007466 ORTHO05D002463 1.6e-44 183.0 135 63.0
BcaC02g11328 Brassica carinata HOM05D007466 ORTHO05D002463 2.1e-44 182.6 135 62.2
A05p13150 Brassica napus HOM05D007466 ORTHO05D002463 2.1e-44 182.6 135 62.2
C04p17280 Brassica napus HOM05D007466 ORTHO05D002463 2.1e-44 182.6 135 62.2
BolC4t23280H Brassica oleracea HOM05D007466 ORTHO05D002463 2.1e-44 182.6 135 62.2
ClCG02G001800 Citrullus lanatus HOM05D007466 ORTHO05D002463 2.1e-44 182.6 131 66.4
CARHR126170 Cardamine hirsuta HOM05D007466 ORTHO05D002463 2.7e-44 182.2 135 61.5
Thhalv10002923m.g Eutrema salsugineum HOM05D007466 ORTHO05D002463 2.7e-44 182.2 135 61.5
Thhalv10017634m.g Eutrema salsugineum HOM05D007466 ORTHO05D002463 4.6e-44 181.4 135 60.7
BcaB02g10474 Brassica carinata HOM05D007466 ORTHO05D002463 7.9e-44 180.6 135 60.7
RcHm_v2.0_Chr2g0126891 Rosa chinensis HOM05D007466 ORTHO05D002463 3.0e-43 178.7 94 92.6
THA.LOC104801548 Tarenaya hassleriana HOM05D007466 ORTHO05D002463 3.0e-43 178.7 135 62.2
Sc06g0006090 Simmondsia chinensis HOM05D007466 ORTHO05D002463 3.9e-43 178.3 135 61.5
AT2G32350 Arabidopsis thaliana HOM05D007466 ORTHO05D002463 5.1e-43 177.9 134 59.7
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 1.1e-42 176.8 135 60.7
Sed0014854 Sechium edule HOM05D007466 ORTHO05D002463 1.9e-42 176.0 134 62.7
AL125U10032 Arabidopsis lyrata HOM05D007466 ORTHO05D002463 4.3e-42 174.9 134 59.0
Carub.0004s1370 Capsella rubella HOM05D007466 ORTHO05D002463 9.6e-42 173.7 135 58.5
MELO3C018805.2 Cucumis melo HOM05D007466 ORTHO05D002463 9.6e-42 173.7 136 64.7
CsaV3_7G003740 Cucumis sativus L. HOM05D007466 ORTHO05D002463 1.3e-41 173.3 132 63.6
Aqoxy4G01992 Aquilegia oxysepala HOM05D007466 ORTHO05D002463 2.4e-40 169.1 134 58.2
PSO541G5792 Papaver somniferum HOM05D007466 ORTHO05D002463 4.5e-39 164.9 136 58.8
PSO675G1565 Papaver somniferum HOM05D007466 ORTHO05D002463 4.5e-39 164.9 136 58.8
Lj1C757T0 Lonicera japonica HOM05D007466 ORTHO05D002463 3.8e-38 161.8 118 61.0
Manes.13G072500 Manihot esculenta HOM05D007466 ORTHO05D002463 7.1e-37 157.5 137 56.2
Nn1g07029 Nelumbo nucifera HOM05D007466 ORTHO05D002463 1.6e-36 156.4 136 58.8
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 2.8e-33 145.6 133 54.9
Rhsim06G0158800 Rhododendron simsii HOM05D007466 ORTHO05D002463 1.1e-32 143.7 134 57.5
SHI54719 Sapria himalayana HOM05D007466 ORTHO05D002463 1.3e-30 136.7 133 51.9
SGA_v2.0_scaffold49G18335 Striga asiatica HOM05D003065 ORTHO05D003802 1.7e-30 136.3 137 48.9
unitig_578.g16773 Utricularia gibba HOM05D007466 ORTHO05D002463 2.1e-28 129.4 137 46.0
CDE05G0337 Ceratophyllum demersum HOM05D007466 ORTHO05D002463 3.6e-20 102.1 133 40.6
Hma1.2p1_0249F.1_g102440 Hydrangea macrophylla HOM05D007466 ORTHO05D002463 5.1e-19 98.2 72 70.8
Hma1.2p1_2032F.1_g311833 Hydrangea macrophylla HOM05D007466 ORTHO05D002463 5.1e-19 98.2 72 70.8
AL4G27734 Arabidopsis lyrata HOM05D007466 ORTHO05D002463 1.3e-17 93.6 79 57.0
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 3.7e-17 92.0 135 38.5
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 7.7e-15 84.3 140 37.1
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 1.8e-11 73.2 149 35.6
Eucgr.D01290 Eucalyptus grandis HOM05D003286 ORTHO05D002463 2.3e-11 72.8 134 32.8
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 8.8e-11 70.9 146 32.9
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 8.8e-11 70.9 139 31.7
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 1.1e-10 70.5 150 32.0
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 1.5e-10 70.1 160 32.5
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 5.7e-10 68.2 147 32.7
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.7e-09 66.6 142 31.7
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 1.7e-09 66.6 161 31.7
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 2.2e-09 66.2 137 34.3
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 2.8e-09 65.9 148 31.1
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 2.8e-09 65.9 149 30.9
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 2.8e-09 65.9 143 32.2
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 2.8e-09 65.9 139 35.3
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 4.8e-09 65.1 144 35.4
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 4.8e-09 65.1 144 32.6
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 4.8e-09 65.1 144 30.6
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 4.8e-09 65.1 145 32.4
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 6.3e-09 64.7 142 31.0
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 8.2e-09 64.3 137 30.7
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 8.2e-09 64.3 158 30.4
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 1.1e-08 63.9 153 30.7
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 1.4e-08 63.5 144 29.9
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 1.8e-08 63.2 150 30.0
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 1.8e-08 63.2 145 29.7
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 2.4e-08 62.8 156 28.2
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 2.4e-08 62.8 139 31.7
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 3.1e-08 62.4 151 29.8
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 3.1e-08 62.4 167 26.3
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 4.1e-08 62.0 146 31.5
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 4.1e-08 62.0 147 31.3
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 5.3e-08 61.6 136 33.8
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 5.3e-08 61.6 147 32.0
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 7.0e-08 61.2 137 32.8
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 9.1e-08 60.8 125 36.0
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 1.2e-07 60.5 143 30.8
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.5e-07 60.1 141 31.9
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 1.5e-07 60.1 163 29.4
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 1.5e-07 60.1 140 31.4
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 2.0e-07 59.7 98 32.7
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 2.0e-07 59.7 98 32.7
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 2.0e-07 59.7 98 32.7
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 2.0e-07 59.7 145 29.0
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 2.0e-07 59.7 166 27.7
AUR62020422 Chenopodium quinoa HOM05D003286 ORTHO05D002463 2.6e-07 59.3 146 28.8
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 2.6e-07 59.3 149 30.9
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 2.6e-07 59.3 145 29.7
CSS0013854 Camellia sinensis var. sinensis HOM05D003286 ORTHO05D002463 3.4e-07 58.9 146 29.5
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 3.4e-07 58.9 136 30.9
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 3.4e-07 58.9 140 27.9
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 4.5e-07 58.5 90 34.4
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 4.5e-07 58.5 90 34.4
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 5.9e-07 58.2 90 34.4
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 5.9e-07 58.2 90 34.4
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 5.9e-07 58.2 148 31.1
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 5.9e-07 58.2 166 28.3
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 7.7e-07 57.8 71 39.4
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 7.7e-07 57.8 146 30.1
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 1.0e-06 57.4 90 34.4
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 1.0e-06 57.4 104 30.8
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 1.0e-06 57.4 104 30.8
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 1.0e-06 57.4 104 30.8
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.0e-06 57.4 145 29.7
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 1.0e-06 57.4 141 30.5
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 1.0e-06 57.4 160 26.2
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 1.3e-06 57.0 159 26.4
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 1.3e-06 57.0 148 29.7
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 1.3e-06 57.0 165 26.7
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.7e-06 56.6 90 35.6
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 1.7e-06 56.6 175 23.4
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 2.2e-06 56.2 101 29.7
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 2.2e-06 56.2 71 38.0
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 2.2e-06 56.2 143 30.8
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 2.2e-06 56.2 147 29.3
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 5.0e-06 55.1 71 38.0
Ca_10980_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 5.0e-06 55.1 62 46.8
Ca_11000_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 5.0e-06 55.1 62 46.8
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 5.0e-06 55.1 89 37.1
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.5e-06 54.7 71 36.6
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.5e-06 54.7 71 36.6
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 8.5e-06 54.3 163 27.0


User provided reference genes

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