Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2658.2 1396 100.0
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2503.0 1395 94.3
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 0.0e+00 2496.8 1395 94.1
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2495.3 1395 94.1
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2483.4 1395 93.5
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2410.6 1395 92.5
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2410.6 1395 92.5
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 0.0e+00 2375.9 1396 89.3
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 0.0e+00 2146.7 1400 80.1
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 0.0e+00 2140.2 1402 80.8
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 0.0e+00 1942.5 1413 72.7
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 0.0e+00 1942.2 1399 72.5
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 0.0e+00 1937.9 1405 72.2
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 0.0e+00 1936.8 1491 69.3
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 0.0e+00 1932.5 1405 72.5
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 0.0e+00 1880.1 1400 69.9
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 0.0e+00 1875.1 1415 69.3
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 0.0e+00 1874.4 1397 70.1
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 0.0e+00 1869.4 1394 69.4
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 0.0e+00 1857.8 1416 68.7
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 0.0e+00 1857.8 1403 69.5
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 1857.0 1397 69.4
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1853.2 1400 69.6
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 0.0e+00 1853.2 1397 69.2
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 1848.2 1397 69.1
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 0.0e+00 1846.6 1403 69.1
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 0.0e+00 1837.0 1401 68.8
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 0.0e+00 1818.9 1408 67.9
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 0.0e+00 1801.6 1405 66.9
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 0.0e+00 1799.3 1404 67.9
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 0.0e+00 1793.9 1407 67.3
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 0.0e+00 1793.1 1400 67.6
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 0.0e+00 1786.5 1401 67.2
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 1783.5 1398 67.1
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 1781.1 1398 67.1
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 0.0e+00 1779.2 1394 67.7
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 0.0e+00 1779.2 1409 66.9
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 0.0e+00 1779.2 1408 68.0
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 0.0e+00 1778.1 1408 66.8
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 1771.1 1405 67.3
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 0.0e+00 1770.7 1408 64.9
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 1766.1 1405 67.2
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 1763.8 1407 67.2
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 1756.5 1405 65.1
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 1756.1 1405 65.3
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 0.0e+00 1748.8 1396 65.1
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 0.0e+00 1746.1 1412 63.7
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 0.0e+00 1740.3 1407 64.2
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 0.0e+00 1737.2 1399 64.1
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 0.0e+00 1737.2 1407 66.2
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 0.0e+00 1734.9 1375 65.0
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 0.0e+00 1733.8 1444 62.5
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 0.0e+00 1729.1 1405 64.4
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 0.0e+00 1722.6 1365 65.6
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 0.0e+00 1718.4 1405 64.4
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 0.0e+00 1711.8 1405 64.0
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 0.0e+00 1706.8 1365 65.3
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 0.0e+00 1697.9 1441 61.8
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 1694.9 1379 64.1
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 0.0e+00 1692.9 1400 62.9
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 0.0e+00 1677.9 1399 63.3
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 0.0e+00 1677.5 1400 65.9
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 0.0e+00 1676.8 1405 63.0
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 1673.7 1338 65.1
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 0.0e+00 1672.1 1452 61.5
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 0.0e+00 1670.6 1398 62.9
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 0.0e+00 1666.7 1353 64.4
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 1666.4 1405 62.5
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 0.0e+00 1655.6 1398 62.7
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 0.0e+00 1654.8 1398 62.7
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 0.0e+00 1654.4 1397 62.3
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 0.0e+00 1653.6 1390 63.2
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 0.0e+00 1648.3 1397 62.0
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 0.0e+00 1645.6 1416 61.8
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 0.0e+00 1644.8 1396 62.4
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 0.0e+00 1641.7 1398 62.3
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 0.0e+00 1641.7 1416 61.8
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 0.0e+00 1640.2 1416 61.9
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 0.0e+00 1633.6 1328 64.6
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 0.0e+00 1609.0 1338 63.2
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 0.0e+00 1609.0 1338 63.2
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 0.0e+00 1577.8 1397 60.1
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 0.0e+00 1558.5 1234 67.4
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 0.0e+00 1507.7 1398 55.9
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 0.0e+00 1483.8 1294 62.1
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 0.0e+00 1367.1 1276 58.0
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 0.0e+00 1349.7 1256 56.8
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1303.9 1053 65.9
CARHR056150 Cardamine hirsuta HOM05D003193 ORTHO05D004924 0.0e+00 1178.3 1108 56.6
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 0.0e+00 1164.4 1415 45.8
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 0.0e+00 1122.5 1402 47.1
TAR636G0188 Trochodendron aralioides HOM05D003193 ORTHO05D004924 1.4e-308 1063.5 902 64.5
CiPaw.07G075300 Carya illinoinensis HOM05D003193 ORTHO05D004924 8.6e-295 1017.7 789 68.2
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 5.6e-294 1015.0 1403 42.6
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 9.2e-289 997.7 733 72.7
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 6.4e-282 974.9 1421 41.2
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 1.4e-265 920.6 623 78.7
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 3.2e-265 919.5 676 72.2
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 1.9e-257 893.6 1364 40.5
Cpa.g.sc51.22 Carica papaya HOM05D003193 ORTHO05D004924 9.3e-257 891.3 843 59.3
Haze_04476 Corylus avellana HOM05D003193 ORTHO05D004924 1.3e-253 880.9 685 67.7
Lj2A47G48 Lonicera japonica HOM05D003193 ORTHO05D004924 3.1e-252 876.3 697 64.6
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 8.4e-250 868.2 679 67.3
vmacro19973 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 7.6e-243 845.1 761 58.5
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 4.6e-232 809.3 1147 41.8
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 3.0e-215 753.4 519 72.1
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 5.7e-206 722.6 626 61.3
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 1.2e-187 661.8 401 83.5
ATR0787G183 Amborella trichopoda HOM05D003193 ORTHO05D004924 9.2e-180 635.6 695 49.5
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 4.0e-175 620.2 362 84.8
SEGI_25764 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 2.6e-166 590.9 646 48.1
Lj2A47G46 Lonicera japonica HOM05D003193 ORTHO05D004924 3.6e-160 570.5 513 62.4
Lsat_1_v5_gn_7_43461 Lactuca sativa HOM05D003193 ORTHO05D004924 4.1e-156 557.0 367 75.7
Lsat_1_v5_gn_3_136501 Lactuca sativa HOM05D003193 ORTHO05D004924 1.2e-144 518.8 363 71.3
Lsat_1_v5_gn_8_84401 Lactuca sativa HOM05D003193 ORTHO05D004924 2.7e-139 501.1 402 64.9
unitig_37.g12281 Utricularia gibba HOM05D003193 ORTHO05D004924 6.4e-133 479.9 729 40.3
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 1.4e-132 478.8 280 85.7
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 5.4e-132 476.9 467 57.2
Psat2g117360 Pisum sativum HOM05D003193 ORTHO05D004924 4.6e-131 473.8 310 78.4
Actinidia06818 Actinidia chinensis HOM05D003193 ORTHO05D004924 8.4e-117 426.4 458 53.1
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 5.9e-110 403.7 1457 26.9
Actinidia26097 Actinidia chinensis HOM05D003193 ORTHO05D004924 4.1e-103 380.9 230 84.8
MD04G1234000 Malus domestica HOM05D003193 ORTHO05D004924 4.7e-99 367.5 340 66.8
Lsat_1_v5_gn_2_9720 Lactuca sativa HOM05D003193 ORTHO05D004924 4.1e-95 354.4 287 64.1
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 3.8e-93 347.8 192 91.1
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 7.5e-81 307.0 174 88.5
Zm00001eb208180 Zea mays HOM05D003193 ORTHO05D004924 2.2e-77 295.4 174 85.1
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 2.1e-75 288.9 165 87.9
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 3.0e-74 285.0 165 86.7
MD04G1233900 Malus domestica HOM05D003193 ORTHO05D004924 4.0e-74 284.6 177 80.2
SHI15643 Sapria himalayana HOM05D003193 ORTHO05D004924 1.2e-73 283.1 278 53.2
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 7.0e-71 273.9 1300 25.2
SEGI_35396 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 2.3e-66 258.8 160 78.8
Actinidia06820 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.2e-65 256.5 160 81.2
SEGI_11076 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 3.9e-61 241.5 219 53.9
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 5.0e-61 241.1 285 52.6
Actinidia06821 Actinidia chinensis HOM05D003193 ORTHO05D026302 8.9e-58 230.3 295 50.5
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 5.8e-49 201.1 138 71.7
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 5.8e-49 201.1 138 71.7
MD04G1234100 Malus domestica HOM05D003193 ORTHO05D004924 1.3e-45 189.9 116 79.3
MD04G1234200 Malus domestica HOM05D003193 ORTHO05D004924 5.1e-45 188.0 141 73.0
Os02g0538400 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 1.4e-42 179.9 226 42.5
Actinidia26098 Actinidia chinensis HOM05D003193 ORTHO05D026302 1.7e-40 172.9 306 43.8
Hund17244 Selenicereus undatus HOM05D003193 ORTHO05D006083 3.6e-35 155.2 109 75.2
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 2.2e-32 146.0 181 44.8
AL2G19220 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 3.9e-29 135.2 156 50.6
Actinidia11722 Actinidia chinensis HOM05D003193 ORTHO05D004924 4.2e-23 115.2 76 75.0
CSS0034895 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D016156 3.5e-22 112.1 125 52.8
Lsat_1_v5_gn_8_118300 Lactuca sativa HOM05D003193 ORTHO05D002149 5.1e-21 108.2 232 33.2
Psat2g117520 Pisum sativum HOM05D003193 ORTHO05D023087 8.7e-21 107.5 70 70.0
MD08G1086100 Malus domestica HOM05D003193 ORTHO05D004924 1.6e-19 103.2 62 83.9
SHI15645 Sapria himalayana HOM05D003193 ORTHO05D004924 1.4e-18 100.1 114 44.7
Zm00001eb208170 Zea mays HOM05D003193 ORTHO05D026302 1.8e-18 99.8 123 52.0
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 5.8e-17 94.7 70 71.4
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 2.2e-16 92.8 61 72.1
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 8.4e-16 90.9 59 74.6
RcHm_v2.0_Chr4g0419431 Rosa chinensis HOM05D000001 ORTHO05D000003 7.1e-15 87.8 57 78.9
RcHm_v2.0_Chr5g0043171 Rosa chinensis HOM05D003193 ORTHO05D004924 6.7e-13 81.3 72 59.7
Actinidia11721 Actinidia chinensis HOM05D003193 ORTHO05D004924 6.2e-11 74.7 66 59.1
MD04G1165900 Malus domestica HOM05D003193 ORTHO05D005802 8.1e-11 74.3 216 31.9
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 1.8e-10 73.2 61 59.0
RcHm_v2.0_Chr6g0282721 Rosa chinensis HOM05D003193 ORTHO05D023087 3.4e-09 68.9 38 89.5
Lsat_1_v5_gn_6_66841 Lactuca sativa HOM05D003193 ORTHO05D228868 5.8e-09 68.2 53 58.5
Actinidia06819 Actinidia chinensis HOM05D003193 ORTHO05D026302 4.9e-08 65.1 49 65.3
Oeu049759.1 Olea europaea HOM05D000203 ORTHO05D000135 1.9e-07 63.2 65 52.3
SMO353G0297 Selaginella moellendorffii HOM05D003193 ORTHO05D374493 1.9e-07 63.2 166 33.1


User provided reference genes

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