Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1914 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.0e-260 902.9 455 100.0
FAN14G2954 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.1e-254 881.3 455 97.8
FAN10G3967 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.2e-235 818.1 455 92.1
FAN24G1602 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.8e-225 785.8 438 92.0
RcHm_v2.0_Chr2g0145131 Rosa chinensis HOM05D008315 ORTHO05D009452 4.3e-187 658.3 412 81.8
FvH4_2g21543 Fragaria vesca HOM05D008315 ORTHO05D009452 4.7e-149 531.9 395 74.2
FAN13G2460 Fragaria x ananassa HOM05D000534 ORTHO05D000389 3.8e-127 459.1 305 80.7
RcHm_v2.0_Chr4g0397391 Rosa chinensis HOM05D008315 ORTHO05D009452 7.3e-102 375.2 228 83.8
FAN08G3171 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.2e-93 347.8 194 94.3
FAN22G1440 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.1e-93 347.1 228 83.3
RcHm_v2.0_Chr4g0393741 Rosa chinensis HOM05D008315 ORTHO05D009452 3.3e-86 323.2 242 69.4
RcHm_v2.0_Chr3g0481961 Rosa chinensis HOM05D008315 ORTHO05D009452 7.1e-73 278.9 188 75.5
RcHm_v2.0_Chr2g0095801 Rosa chinensis HOM05D008315 ORTHO05D009452 1.6e-61 241.1 377 40.3
FvH4_6g11351 Fragaria vesca HOM05D008315 ORTHO05D009452 4.8e-53 213.0 456 35.5
FAN08G2751 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.4e-51 206.8 415 37.3
RcHm_v2.0_Chr2g0136581 Rosa chinensis HOM05D008315 ORTHO05D009452 5.8e-51 206.1 438 34.7
FAN04G1611 Fragaria x ananassa HOM05D008315 ORTHO05D009452 6.5e-50 202.6 448 34.8
RcHm_v2.0_Chr7g0237841 Rosa chinensis HOM05D009706 ORTHO05D009452 8.4e-50 202.2 399 36.3
FAN22G1488 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.5e-49 200.7 373 38.3
FAN25G1520 Fragaria x ananassa HOM05D008315 ORTHO05D009452 9.3e-49 198.7 415 37.1
RcHm_v2.0_Chr2g0111771 Rosa chinensis HOM05D012440 ORTHO05D009452 7.9e-48 195.7 375 35.5
FAN14G0707 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.8e-45 187.2 412 36.9
FvH4_2g00150 Fragaria vesca HOM05D008315 ORTHO05D009452 1.1e-44 185.3 455 34.9
RcHm_v2.0_Chr2g0143311 Rosa chinensis HOM05D012440 ORTHO05D009452 1.2e-43 181.8 374 33.2
RcHm_v2.0_Chr6g0260911 Rosa chinensis HOM05D012440 ORTHO05D009452 4.5e-43 179.9 283 38.9
FAN05G1217 Fragaria x ananassa HOM05D008315 ORTHO05D009452 7.2e-41 172.6 311 39.2
RcHm_v2.0_Chr7g0184951 Rosa chinensis HOM05D008315 ORTHO05D009452 9.4e-41 172.2 338 34.9
FvH4_4g00092 Fragaria vesca HOM05D008315 ORTHO05D009452 5.1e-39 166.4 472 31.1
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 3.3e-38 163.7 304 38.5
RcHm_v2.0_Chr4g0435991 Rosa chinensis HOM05D009706 ORTHO05D009452 7.4e-38 162.5 314 35.4
RcHm_v2.0_Chr2g0151391 Rosa chinensis HOM05D008315 ORTHO05D009452 1.3e-37 161.8 277 37.9
FAN01G0827 Fragaria x ananassa HOM05D012440 ORTHO05D009452 4.8e-37 159.8 363 32.2
FAN24G3308 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.1e-36 158.7 407 34.6
FAN03G0562 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.2e-32 145.2 415 32.8
FAN05G5299 Fragaria x ananassa HOM05D009706 ORTHO05D009452 6.1e-32 142.9 374 29.9
RcHm_v2.0_Chr3g0468771 Rosa chinensis HOM05D009706 ORTHO05D009452 3.0e-31 140.6 257 35.8
RcHm_v2.0_Chr2g0127541 Rosa chinensis HOM05D008315 ORTHO05D009452 6.7e-31 139.4 200 38.5
FAN04G2114 Fragaria x ananassa HOM05D012440 ORTHO05D009452 1.5e-30 138.3 364 29.9
RcHm_v2.0_Chr7g0201721 Rosa chinensis HOM05D008315 ORTHO05D009452 2.8e-29 134.0 196 39.3
FAN05G2530 Fragaria x ananassa HOM05D009706 ORTHO05D009452 1.4e-28 131.7 370 30.0
FAN20G0527 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.4e-28 131.7 324 31.8
FAN02G2771 Fragaria x ananassa HOM05D009706 ORTHO05D009452 4.1e-28 130.2 406 29.6
RcHm_v2.0_Chr5g0015951 Rosa chinensis HOM05D008315 ORTHO05D009452 2.0e-27 127.9 159 45.9
FvH4_3g32800 Fragaria vesca HOM05D009706 ORTHO05D009452 3.5e-27 127.1 381 30.7
FAN27G0213 Fragaria x ananassa HOM05D009706 ORTHO05D009452 3.5e-27 127.1 325 32.3
FAN08G0992 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.9e-25 121.3 252 35.7
Hma1.2p1_0154F.1_g068115 Hydrangea macrophylla HOM05D008315 ORTHO05D009452 1.2e-24 118.6 314 32.5
Hma1.2p1_0160F.1_g070785 Hydrangea macrophylla HOM05D008315 ORTHO05D009452 1.2e-24 118.6 314 32.5
FAN21G3482 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.6e-24 117.1 219 37.0
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.9e-23 113.6 354 29.1
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.9e-23 113.6 354 29.1
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 5.2e-23 113.2 354 29.1
TAR365G0008 Trochodendron aralioides HOM05D001163 ORTHO05D001769 7.4e-22 109.4 354 28.2
FAN20G0161 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.3e-21 108.6 274 31.8
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 7.0e-20 102.8 264 28.0
MD02G1315300 Malus domestica HOM05D008315 ORTHO05D009452 2.6e-19 100.9 341 30.8
FAN23G0323 Fragaria x ananassa HOM05D012440 ORTHO05D009452 1.0e-18 99.0 242 31.0
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 1.0e-18 99.0 302 28.1
RcHm_v2.0_Chr5g0016651 Rosa chinensis HOM05D008315 ORTHO05D009452 2.9e-18 97.4 65 69.2
TAR369G0469 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.5e-18 96.3 255 29.0
RcHm_v2.0_Chr5g0039211 Rosa chinensis HOM05D008315 ORTHO05D009452 8.5e-18 95.9 138 37.7
Dinv09828 Davidia involucrata HOM05D001309 ORTHO05D000385 2.5e-17 94.4 318 26.1
FAN15G1960 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.5e-17 93.2 248 31.0
TAR633G1500 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.4e-17 92.4 253 30.8
FAN17G0399 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.6e-16 91.7 165 39.4
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 6.1e-16 89.7 314 25.8
Rhsim10G0033700 Rhododendron simsii HOM05D001309 ORTHO05D000385 6.1e-16 89.7 275 27.3
RcHm_v2.0_Chr6g0254441 Rosa chinensis HOM05D008315 ORTHO05D009452 1.0e-15 89.0 226 31.4
Rhsim06G0190000 Rhododendron simsii HOM05D001309 ORTHO05D000385 1.4e-15 88.6 278 27.3
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 2.3e-15 87.8 355 25.9
TAR625G0459 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.0e-15 87.4 314 29.0
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 4.0e-15 87.0 310 26.5
Dinv04171 Davidia involucrata HOM05D010146 ORTHO05D000385 5.2e-15 86.7 242 28.9
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 6.8e-15 86.3 310 25.8
TAR628G0437 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.8e-15 86.3 291 26.5
TAR633G0853 Trochodendron aralioides HOM05D001163 ORTHO05D001769 8.8e-15 85.9 206 32.0
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.2e-14 85.5 310 26.5
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 1.2e-14 85.5 330 27.0
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.5e-14 85.1 330 27.0
MD03G1101500 Malus domestica HOM05D008315 ORTHO05D009452 7.5e-14 82.8 123 46.3
Dinv15672 Davidia involucrata HOM05D010146 ORTHO05D000385 9.7e-14 82.4 179 30.2
Dinv12592 Davidia involucrata HOM05D010146 ORTHO05D000385 2.2e-13 81.3 160 30.6
PSO541G0763 Papaver somniferum HOM05D001309 ORTHO05D000385 3.7e-13 80.5 273 26.4
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 6.3e-13 79.7 363 26.4
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 6.3e-13 79.7 344 27.0
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 1.1e-12 79.0 366 26.5
ECA096G0001 Erigeron canadensis HOM05D008488 ORTHO05D000385 2.4e-12 77.8 320 25.3
Nitab4.5_0008492g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.4e-12 77.8 295 28.5
Dinv12401 Davidia involucrata HOM05D010146 ORTHO05D000385 4.1e-12 77.0 173 28.9
Lj5g0025673 Lotus japonicus HOM05D001309 ORTHO05D000385 4.1e-12 77.0 392 24.2
Rhsim09G0075900 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.1e-12 77.0 328 25.3
Nitab4.5_0005139g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.6e-11 75.1 185 29.2
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.6e-11 75.1 287 24.0
Dinv19999 Davidia involucrata HOM05D010146 ORTHO05D000385 2.0e-11 74.7 159 28.9
EL10Ac2g03126 Beta vulgaris HOM05D008595 ORTHO05D010945 3.5e-11 73.9 343 25.9
CSS0030327 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 7.7e-11 72.8 295 26.1
ECA164G0002 Erigeron canadensis HOM05D008488 ORTHO05D000385 7.7e-11 72.8 275 24.4
Dinv04329 Davidia involucrata HOM05D010146 ORTHO05D000385 1.7e-10 71.6 119 34.5
Dinv11732 Davidia involucrata HOM05D010146 ORTHO05D000385 1.7e-10 71.6 119 34.5
ECA234G0887 Erigeron canadensis HOM05D008488 ORTHO05D000385 1.7e-10 71.6 178 28.7
CSS0016301 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.9e-10 70.9 305 26.2
TAR629G3448 Trochodendron aralioides HOM05D001163 ORTHO05D001769 3.8e-10 70.5 187 34.2
ECA234G1533 Erigeron canadensis HOM05D000107 ORTHO05D000062 5.0e-10 70.1 420 24.0
Nn4g24072 Nelumbo nucifera HOM05D001309 ORTHO05D000385 5.0e-10 70.1 175 28.0
ECA232G4413 Erigeron canadensis HOM05D000107 ORTHO05D000062 6.5e-10 69.7 419 25.5
CSS0042181 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.1e-09 68.9 280 26.1
FAN03G2326 Fragaria x ananassa HOM05D009706 ORTHO05D009452 1.1e-09 68.9 279 26.2
Nitab4.5_0002394g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.1e-09 68.9 274 26.3
Nitab4.5_0028686g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.5e-09 68.6 291 26.8
CSS0011333 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.5e-09 67.8 280 25.7
CSS0017872 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.5e-09 67.8 280 25.4
CSS0011055 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.2e-09 67.4 280 25.7
CSS0004946 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.2e-09 67.0 280 25.7
CSS0024690 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 5.5e-09 66.6 280 25.7
CSS0007321 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 7.2e-09 66.2 280 25.4
CANSAT11G0213 Cannabis sativa HOM05D001309 ORTHO05D000385 7.2e-09 66.2 307 26.1
TAR365G0630 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.4e-09 65.9 201 25.9
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 1.2e-08 65.5 376 22.9
Nitab4.5_0001346g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.2e-08 65.5 175 30.3
Nitab4.5_0006718g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.6e-08 65.1 195 30.8
Rhsim11G0067500 Rhododendron simsii HOM05D010774 ORTHO05D013539 1.6e-08 65.1 293 24.2
TAR369G0592 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.6e-08 65.1 283 25.4
Hund06374 Selenicereus undatus HOM05D001385 ORTHO05D004434 2.1e-08 64.7 247 25.9
FAN03G0559 Fragaria x ananassa HOM05D012440 ORTHO05D009452 2.7e-08 64.3 161 31.7
Nitab4.5_0000999g0130 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.6e-08 63.9 330 24.5
Nitab4.5_0000804g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.1e-08 63.2 300 24.7
RcHm_v2.0_Chr6g0274501 Rosa chinensis HOM05D008315 ORTHO05D009452 6.1e-08 63.2 202 29.2
Nn7g37991 Nelumbo nucifera HOM05D001309 ORTHO05D000385 8.0e-08 62.8 174 28.7
Peaxi162Scf00318g00919 Petunia axillaris HOM05D002954 ORTHO05D003353 8.0e-08 62.8 233 24.9
CiPaw.09G181600 Carya illinoinensis HOM05D001309 ORTHO05D000385 1.0e-07 62.4 293 23.9
PSO349G0081 Papaver somniferum HOM05D001309 ORTHO05D000385 1.4e-07 62.0 272 22.4
AL1G63190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 1.8e-07 61.6 202 31.7
Manes.06G115750 Manihot esculenta HOM05D009290 ORTHO05D009597 1.8e-07 61.6 291 25.1
TAR624G0746 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.8e-07 61.6 155 32.3
Aqoxy6G01916 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 2.3e-07 61.2 304 26.0
Atru.chr3.1415 Acer truncatum HOM05D005012 ORTHO05D005886 3.0e-07 60.8 292 25.3
EL10Ac1g01751 Beta vulgaris HOM05D004615 ORTHO05D000385 4.0e-07 60.5 275 25.5
ECA234G2194 Erigeron canadensis HOM05D000004 ORTHO05D000002 4.0e-07 60.5 311 23.5
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 4.0e-07 60.5 329 24.9
Nitab4.5_0001523g0060 Nicotiana tabacum HOM05D001309 ORTHO05D000385 4.0e-07 60.5 190 30.0
Atru.chr6.1842 Acer truncatum HOM05D005012 ORTHO05D005886 5.2e-07 60.1 180 27.2
Nn1g02510 Nelumbo nucifera HOM05D001309 ORTHO05D000385 5.2e-07 60.1 192 25.5
EL10As3g23351 Beta vulgaris HOM05D008455 ORTHO05D009597 6.8e-07 59.7 252 22.6
CSS0013398 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 6.8e-07 59.7 108 31.5
CiPaw.10G087600 Carya illinoinensis HOM05D001309 ORTHO05D000385 8.8e-07 59.3 289 23.2
TWI15G0427 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 8.8e-07 59.3 240 28.8
TAR383G0938 Trochodendron aralioides HOM05D009698 ORTHO05D000385 8.8e-07 59.3 138 33.3
CiPaw.16G058400 Carya illinoinensis HOM05D001309 ORTHO05D000385 1.2e-06 58.9 289 22.8
Cpa.g.sc113.47 Carica papaya HOM05D005763 ORTHO05D005970 1.5e-06 58.5 236 29.7
COL.COLO4_33862 Corchorus olitorius HOM05D001309 ORTHO05D000385 1.5e-06 58.5 133 27.8
Nitab4.5_0000039g0160 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.5e-06 58.5 247 26.7
Nitab4.5_0000188g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.5e-06 58.5 393 23.7
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 1.5e-06 58.5 260 26.5
Sopen09g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 1.5e-06 58.5 257 25.7
CSS0040510 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.0e-06 58.2 299 24.7
Dinv13764 Davidia involucrata HOM05D011313 ORTHO05D013316 2.0e-06 58.2 307 23.8
Hma1.2p1_2026F.1_g311550 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 2.0e-06 58.2 365 24.7
Nitab4.5_0000111g0060 Nicotiana tabacum HOM05D008455 ORTHO05D009597 2.0e-06 58.2 259 25.1
CSS0000023 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.6e-06 57.8 283 24.0
CSS0004008 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.6e-06 57.8 289 23.9
Peaxi162Scf00624g00076 Petunia axillaris HOM05D002954 ORTHO05D003353 3.4e-06 57.4 227 24.2
Sopen01g006470 Solanum pennellii HOM05D008041 ORTHO05D000385 3.4e-06 57.4 279 25.4
Sopen03g012270 Solanum pennellii HOM05D008041 ORTHO05D000385 3.4e-06 57.4 257 25.3
Sopen04g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 3.4e-06 57.4 257 25.3
Sopen12g016000 Solanum pennellii HOM05D008041 ORTHO05D000385 3.4e-06 57.4 257 25.3
ECA127G0002 Erigeron canadensis HOM05D008488 ORTHO05D000385 4.4e-06 57.0 175 28.0
Hund31150 Selenicereus undatus HOM05D004615 ORTHO05D000385 4.4e-06 57.0 327 24.2
CSS0000994 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 5.7e-06 56.6 305 25.2
FAN05G1126 Fragaria x ananassa HOM05D009706 ORTHO05D009452 7.5e-06 56.2 309 23.9
FAN11G3924 Fragaria x ananassa HOM05D008315 ORTHO05D009452 9.8e-06 55.8 48 58.3
Rhsim13G0228900 Rhododendron simsii HOM05D001309 ORTHO05D000385 9.8e-06 55.8 186 26.3
TAR629G0890 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.8e-06 55.8 92 32.6


User provided reference genes

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