Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 9.4e-133 476.9 240 100.0
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 3.3e-130 468.4 240 97.9
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.2e-127 459.9 240 95.4
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 1.0e-126 456.8 240 95.8
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.0e-126 456.8 240 95.8
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 2.8e-121 438.7 240 92.1
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 1.6e-108 396.4 243 82.3
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 2.1e-92 342.8 238 71.4
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 8.0e-92 340.9 245 70.2
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 4.0e-91 338.6 245 69.8
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 5.2e-91 338.2 263 67.7
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 2.6e-90 335.9 238 74.4
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 8.3e-89 330.9 218 76.6
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 3.2e-88 328.9 248 69.4
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 4.1e-88 328.6 241 70.5
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 9.2e-88 327.4 210 75.2
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 1.6e-87 326.6 246 68.3
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 5.9e-87 324.7 249 67.5
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 1.0e-86 323.9 246 69.1
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 1.0e-86 323.9 242 67.8
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 1.3e-86 323.6 210 74.8
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 1.3e-86 323.6 231 69.3
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 1.7e-86 323.2 244 68.0
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 2.3e-86 322.8 212 75.0
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 2.3e-86 322.8 238 69.7
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 8.6e-86 320.9 243 68.7
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 1.5e-85 320.1 207 74.9
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 1.5e-85 320.1 205 76.1
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 7.3e-85 317.8 238 66.8
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 1.6e-84 316.6 203 75.9
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 2.1e-84 316.2 246 65.0
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 2.1e-84 316.2 246 66.7
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 3.6e-84 315.5 246 66.3
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 3.6e-84 315.5 217 70.0
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 8.0e-84 314.3 243 63.8
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 1.0e-83 313.9 219 70.3
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 1.4e-83 313.5 261 65.5
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 1.4e-83 313.5 242 65.3
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 2.3e-83 312.8 223 67.7
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 3.1e-83 312.4 212 70.3
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 6.8e-83 311.2 228 67.1
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 2.6e-82 309.3 241 64.7
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 2.6e-82 309.3 203 74.4
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 4.4e-82 308.5 228 67.1
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 1.3e-81 307.0 248 64.9
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 1.3e-81 307.0 223 71.3
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 2.2e-81 306.2 242 65.3
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 1.1e-80 303.9 181 79.6
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 1.9e-80 303.1 215 68.8
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 3.2e-80 302.4 247 62.8
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 3.2e-80 302.4 231 66.2
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 4.1e-80 302.0 230 67.0
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 7.0e-80 301.2 246 62.2
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 7.0e-80 301.2 186 78.5
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 9.2e-80 300.8 184 79.3
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 1.2e-79 300.4 188 76.6
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 4.6e-79 298.5 204 71.1
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 7.8e-79 297.7 208 71.6
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 1.0e-78 297.4 184 77.7
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 1.0e-78 297.4 233 63.9
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 1.3e-78 297.0 203 70.0
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 2.3e-78 296.2 233 64.4
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 2.3e-78 296.2 233 64.4
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 3.0e-78 295.8 237 65.0
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 8.6e-78 294.3 216 66.2
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 1.5e-77 293.5 176 78.4
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 1.9e-77 293.1 178 78.7
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 4.3e-77 292.0 203 71.4
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 5.6e-77 291.6 200 71.5
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 7.3e-77 291.2 233 63.9
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 9.5e-77 290.8 203 70.0
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 2.1e-76 289.7 245 61.2
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 2.1e-76 289.7 255 60.0
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 6.2e-76 288.1 229 64.2
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 6.2e-76 288.1 228 63.6
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 3.1e-75 285.8 247 61.9
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 5.2e-75 285.0 241 62.2
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 5.2e-75 285.0 173 78.6
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 6.8e-75 284.6 235 62.1
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 6.8e-75 284.6 233 63.5
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 8.9e-75 284.3 183 72.7
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 8.9e-75 284.3 232 64.2
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 2.6e-74 282.7 195 69.2
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 5.8e-74 281.6 162 77.8
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 9.8e-74 280.8 218 64.2
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 2.2e-73 279.6 181 72.4
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 2.9e-73 279.3 205 67.3
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 6.4e-73 278.1 211 64.0
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 8.3e-73 277.7 247 60.7
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 1.6e-71 273.5 230 63.5
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 2.1e-71 273.1 221 62.4
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 4.6e-71 271.9 162 78.4
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 2.3e-70 269.6 252 57.1
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 3.0e-70 269.2 197 67.0
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 3.3e-69 265.8 219 60.3
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 1.2e-68 263.8 150 81.3
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 1.6e-63 246.9 173 68.8
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 7.8e-63 244.6 247 55.5
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 3.3e-61 239.2 174 67.8
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 4.7e-60 235.3 197 57.9
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 1.4e-59 233.8 123 87.8
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 1.3e-57 227.3 192 57.8
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 2.7e-55 219.5 210 54.3
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 6.0e-55 218.4 209 52.2
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.6e-47 193.7 185 50.8
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 2.1e-47 193.4 180 51.1
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 3.9e-46 189.1 146 68.5
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.3e-44 184.1 177 52.0
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 9.0e-35 151.4 142 62.0
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 3.8e-33 146.0 93 68.8
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.4e-27 126.7 117 60.7
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 9.0e-27 124.8 130 53.8
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 1.7e-20 104.0 86 67.4
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 1.7e-20 104.0 86 66.3
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 1.7e-20 104.0 86 67.4
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 1.1e-19 101.3 110 55.5
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 1.1e-19 101.3 176 33.5
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 1.4e-19 100.9 86 66.3
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 5.3e-19 99.0 171 35.1
SEGI_17791 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 4.7e-15 85.9 60 61.7
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 3.3e-13 79.7 72 65.3
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 4.5e-10 69.3 72 58.3
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 2.9e-09 66.6 87 44.8
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 3.8e-09 66.2 73 53.4
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 8.5e-09 65.1 73 52.1
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 1.4e-08 64.3 72 55.6
VMungo0647G1967 Vigna mungo HOM05D006376 ORTHO05D008046 3.0e-06 56.6 39 76.9


User provided reference genes

Program Settings