Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 6.1e-211 737.3 379 100.0
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 6.1e-211 737.3 379 100.0
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 2.6e-206 721.8 379 97.9
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.6e-206 721.8 379 97.9
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 7.2e-204 713.8 379 96.8
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.7e-203 711.8 380 97.1
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 9.7e-193 676.8 373 92.8
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 2.8e-179 632.1 376 85.9
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 1.8e-175 619.4 351 87.7
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 1.7e-173 612.8 350 88.0
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 3.3e-172 608.6 371 81.4
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 7.3e-172 607.4 361 85.0
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 7.3e-172 607.4 373 82.6
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 3.6e-171 605.1 371 83.3
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 3.0e-170 602.1 372 81.2
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 3.0e-170 602.1 372 81.2
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 6.8e-170 600.9 348 86.8
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 8.9e-170 600.5 354 85.0
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 1.5e-169 599.7 360 83.9
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 1.5e-169 599.7 350 86.3
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 3.4e-169 598.6 350 84.6
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 5.7e-169 597.8 363 82.6
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 5.7e-169 597.8 351 85.5
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 7.5e-169 597.4 382 80.4
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 1.3e-168 596.7 350 86.3
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 1.3e-168 596.7 366 83.3
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 1.7e-168 596.3 348 84.8
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 1.7e-168 596.3 348 84.8
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.7e-168 596.3 350 84.3
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 1.7e-168 596.3 363 82.1
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 2.2e-168 595.9 348 85.1
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 3.7e-168 595.1 350 84.6
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 4.9e-168 594.7 362 83.4
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 8.3e-168 594.0 348 85.1
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 8.3e-168 594.0 350 85.7
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 1.1e-167 593.6 348 85.6
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 1.4e-167 593.2 351 85.2
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 1.8e-167 592.8 348 84.5
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 2.4e-167 592.4 348 84.2
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 2.4e-167 592.4 348 84.2
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 3.2e-167 592.0 360 83.1
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 3.2e-167 592.0 362 82.3
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 3.2e-167 592.0 362 82.9
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 5.4e-167 591.3 348 83.9
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 7.0e-167 590.9 348 84.5
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 9.2e-167 590.5 348 84.5
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 9.2e-167 590.5 350 85.4
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 9.2e-167 590.5 354 83.3
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 9.2e-167 590.5 348 83.6
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 1.6e-166 589.7 348 83.6
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 2.0e-166 589.3 348 83.9
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 2.0e-166 589.3 348 83.9
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 2.0e-166 589.3 348 83.9
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 3.5e-166 588.6 362 83.4
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 4.6e-166 588.2 372 80.4
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 4.6e-166 588.2 348 83.6
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 4.6e-166 588.2 348 83.3
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 4.6e-166 588.2 350 84.0
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 4.6e-166 588.2 351 82.6
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 4.6e-166 588.2 345 85.8
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 5.9e-166 587.8 350 84.0
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 5.9e-166 587.8 362 82.3
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 1.0e-165 587.0 348 83.3
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 1.0e-165 587.0 345 83.8
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 1.0e-165 587.0 360 82.5
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 1.3e-165 586.6 379 80.2
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 1.3e-165 586.6 378 79.1
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.7e-165 586.3 363 81.0
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 1.7e-165 586.3 363 81.0
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 2.3e-165 585.9 364 81.6
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 2.3e-165 585.9 361 81.7
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 3.0e-165 585.5 356 82.9
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 3.0e-165 585.5 364 81.6
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 5.0e-165 584.7 363 80.7
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.1e-164 583.6 363 81.0
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 1.9e-164 582.8 353 82.7
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 1.9e-164 582.8 353 82.4
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 4.3e-164 581.6 363 80.4
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 5.6e-164 581.3 357 81.2
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 7.3e-164 580.9 379 78.6
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 7.3e-164 580.9 356 82.9
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 7.3e-164 580.9 360 80.8
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 9.5e-164 580.5 378 78.8
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 2.1e-163 579.3 348 81.9
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 2.1e-163 579.3 363 80.4
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 1.1e-162 577.0 347 82.4
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 1.4e-162 576.6 375 78.1
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.8e-162 576.2 368 80.2
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 1.8e-162 576.2 377 78.8
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 4.0e-162 575.1 362 81.2
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 8.9e-162 573.9 383 78.1
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 1.5e-161 573.2 367 80.9
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 1.5e-161 573.2 381 79.0
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 5.8e-161 571.2 368 76.9
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 7.5e-161 570.9 345 83.5
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 9.8e-161 570.5 362 80.1
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 1.3e-160 570.1 360 80.3
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 1.7e-160 569.7 345 81.4
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 2.2e-160 569.3 356 80.3
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 4.9e-160 568.2 370 79.2
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 6.4e-160 567.8 347 82.1
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 8.3e-160 567.4 376 77.7
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 8.3e-160 567.4 367 78.5
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 1.1e-159 567.0 345 82.6
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 1.1e-159 567.0 360 81.7
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 1.9e-159 566.2 367 78.5
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.6e-158 563.1 357 79.8
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 2.7e-158 562.4 359 77.2
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 4.6e-158 561.6 347 81.6
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 1.3e-157 560.1 379 74.9
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 3.9e-157 558.5 348 80.7
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 5.0e-157 558.1 347 81.6
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 1.9e-156 556.2 394 75.6
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 7.3e-156 554.3 322 86.0
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 6.2e-155 551.2 375 74.4
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 8.1e-155 550.8 384 73.4
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 7.5e-153 544.3 362 75.1
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 9.2e-151 537.3 345 78.0
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 3.6e-147 525.4 368 72.6
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 6.2e-147 524.6 369 76.2
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 4.0e-146 521.9 368 73.4
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 1.5e-145 520.0 340 77.1
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 3.5e-142 508.8 321 81.0
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 1.7e-141 506.5 296 84.8
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 1.4e-138 496.9 342 76.0
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 1.0e-133 480.7 347 69.5
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 2.1e-131 473.0 357 68.1
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 2.4e-130 469.5 294 78.6
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 8.4e-120 434.5 306 71.9
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 7.4e-116 421.4 316 69.9
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 9.0e-106 387.9 225 86.7
Cc11_g06980 Coffea canephora HOM05D004220 ORTHO05D006217 3.0e-85 319.7 188 85.6
Nn3g18412 Nelumbo nucifera HOM05D004220 ORTHO05D006217 1.6e-81 307.4 186 82.8
TAR629G1713 Trochodendron aralioides HOM05D004220 ORTHO05D006217 3.8e-64 249.6 173 71.7
TAR629G0578 Trochodendron aralioides HOM05D004220 ORTHO05D006217 3.3e-63 246.5 173 70.5
MD13G1041100 Malus domestica HOM05D004220 ORTHO05D006217 2.9e-56 223.4 240 55.8
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 6.8e-53 212.2 118 85.6
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 2.6e-52 210.3 118 84.7
Aqoxy6G01744 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.0e-48 196.8 138 68.8
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 1.1e-47 194.9 177 58.8
TAR629G0842 Trochodendron aralioides HOM05D004220 ORTHO05D006217 5.6e-47 192.6 170 62.4
TAR629G3246 Trochodendron aralioides HOM05D004220 ORTHO05D006217 5.6e-47 192.6 170 62.4
Aqoxy2G01924 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 5.2e-45 186.0 125 70.4
Aqoxy7G02277 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.4e-44 183.3 121 71.1
RcHm_v2.0_Chr2g0166251 Rosa chinensis HOM05D004220 ORTHO05D006217 1.4e-42 177.9 102 89.2
CsaV3_5G014420 Cucumis sativus L. HOM05D004220 ORTHO05D006217 1.4e-37 161.4 97 80.4
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 4.1e-34 149.8 119 70.6
Aqoxy3G02388 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.5e-31 140.6 139 53.2
AL7G45370 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 4.3e-31 139.8 79 84.8
QL03p036261 Quercus lobata HOM05D004220 ORTHO05D006217 2.8e-30 137.1 78 87.2
CDE12G0826 Ceratophyllum demersum HOM05D004220 ORTHO05D017372 3.6e-30 136.7 113 61.1
HanXRQChr08g0220351 Helianthus annuus HOM05D004220 ORTHO05D006217 4.7e-30 136.3 88 77.3
Actinidia36617 Actinidia chinensis HOM05D004220 ORTHO05D006217 3.1e-29 133.7 77 84.4
MSTRG.2121 Avicennia marina HOM05D004220 ORTHO05D017372 1.2e-28 131.7 98 66.3
Aqoxy5G02471 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.4e-28 130.2 97 66.0
Aqoxy5G02966 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.9e-27 127.1 96 64.6
Aqoxy5G02658 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.8e-27 126.7 95 65.3
BraA09t39195Z Brassica rapa HOM05D004220 ORTHO05D027881 4.9e-27 126.3 71 84.5
C05p12760 Brassica napus HOM05D004220 ORTHO05D027881 8.4e-27 125.6 67 86.6
A09p36790 Brassica napus HOM05D004220 ORTHO05D027881 2.7e-25 120.6 67 85.1
BraSC56t46400Z Brassica rapa HOM05D004220 ORTHO05D027881 6.6e-24 115.9 72 79.2
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 7.6e-20 102.4 81 67.9
TAR633G1096 Trochodendron aralioides HOM05D004220 ORTHO05D000192 2.3e-16 90.9 59 72.9
Actinidia26742 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.1e-15 88.6 52 80.8
HanXRQChr17g0555841 Helianthus annuus HOM05D004220 ORTHO05D006217 5.6e-15 86.3 58 72.4
Cfa024397 Carpinus fangiana HOM05D004220 ORTHO05D043712 1.3e-11 75.1 375 25.3
C09p39400 Brassica napus HOM05D004220 ORTHO05D039209 1.0e-08 65.5 40 85.0


User provided reference genes

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