Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.1e-94 347.4 171 100.0
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.8e-69 266.2 157 87.3
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 7.8e-57 224.2 143 84.6
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 1.0e-56 223.8 143 83.9
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 2.3e-56 222.6 143 83.9
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 2.4e-50 202.6 121 89.3
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 7.3e-47 191.0 143 74.8
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 1.1e-42 177.2 143 64.3
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 1.2e-41 173.7 143 65.0
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 4.3e-39 165.2 145 60.7
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 2.8e-38 162.5 145 61.4
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 2.0e-36 156.4 146 57.5
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 3.4e-36 155.6 144 56.9
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 5.8e-36 154.8 145 58.6
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 7.6e-36 154.5 145 57.9
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 7.6e-36 154.5 146 57.5
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.7e-35 153.3 144 55.6
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 3.8e-35 152.1 142 55.6
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 6.4e-35 151.4 163 50.9
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 6.4e-35 151.4 144 55.6
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 3.2e-34 149.1 139 59.0
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 4.2e-34 148.7 141 56.7
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 4.2e-34 148.7 145 55.2
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 4.2e-34 148.7 145 56.6
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 5.4e-34 148.3 143 55.2
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 7.1e-34 147.9 140 58.6
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 9.3e-34 147.5 142 54.9
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.2e-33 147.1 109 68.8
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.1e-33 146.4 139 56.8
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.1e-33 146.4 145 54.5
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 2.7e-33 146.0 141 55.3
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 2.7e-33 146.0 146 50.7
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 3.5e-33 145.6 141 54.6
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 4.6e-33 145.2 140 55.7
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 6.0e-33 144.8 139 55.4
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 7.8e-33 144.4 144 53.5
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.0e-32 144.1 141 53.9
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 1.0e-32 144.1 142 53.5
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.0e-32 144.1 82 91.5
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 1.3e-32 143.7 144 52.8
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 1.3e-32 143.7 140 56.4
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 1.3e-32 143.7 140 57.1
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 1.7e-32 143.3 145 53.1
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 2.3e-32 142.9 144 53.5
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 6.6e-32 141.4 107 72.9
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 6.6e-32 141.4 139 55.4
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 6.6e-32 141.4 142 54.9
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 8.7e-32 141.0 144 55.6
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 8.7e-32 141.0 142 54.2
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 1.1e-31 140.6 144 50.7
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 1.1e-31 140.6 144 50.7
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.1e-31 140.6 144 50.7
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.5e-31 140.2 144 52.8
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 1.5e-31 140.2 142 53.5
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.5e-31 140.2 128 58.6
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.9e-31 139.8 143 52.4
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 2.5e-31 139.4 166 50.0
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.5e-31 139.4 145 49.7
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 3.3e-31 139.0 142 54.2
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 3.3e-31 139.0 144 52.1
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 4.3e-31 138.7 142 53.5
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 4.3e-31 138.7 142 53.5
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 4.3e-31 138.7 139 51.1
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 5.6e-31 138.3 142 53.5
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 7.3e-31 137.9 142 53.5
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.6e-30 136.7 132 56.1
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 2.1e-30 136.3 139 54.0
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 2.8e-30 136.0 146 54.8
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.8e-30 136.0 149 54.4
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.8e-30 136.0 139 53.2
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 2.8e-30 136.0 145 55.2
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 3.6e-30 135.6 144 50.0
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 4.8e-30 135.2 152 50.7
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 6.2e-30 134.8 142 52.1
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 8.1e-30 134.4 142 52.1
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.1e-29 134.0 139 53.2
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 1.1e-29 134.0 145 51.0
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.1e-29 134.0 145 51.7
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.4e-29 133.7 139 53.2
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.4e-29 133.7 140 51.4
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.4e-29 132.9 142 51.4
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 2.4e-29 132.9 145 49.7
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 3.1e-29 132.5 142 51.4
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 4.0e-29 132.1 139 52.5
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 5.3e-29 131.7 139 52.5
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 9.0e-29 131.0 145 52.4
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.2e-28 130.6 142 51.4
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 1.2e-28 130.6 144 50.7
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 2.0e-28 129.8 143 51.7
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 3.4e-28 129.0 144 50.7
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 4.5e-28 128.6 143 52.4
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 5.8e-28 128.3 100 65.0
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 7.6e-28 127.9 142 49.3
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 7.6e-28 127.9 144 50.0
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 7.6e-28 127.9 124 55.6
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 9.9e-28 127.5 133 54.9
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 2.2e-27 126.3 141 48.9
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.2e-27 126.3 107 59.8
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 3.8e-27 125.6 143 51.7
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 3.8e-27 125.6 145 46.2
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 4.9e-27 125.2 107 58.9
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 8.4e-27 124.4 108 63.0
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 8.4e-27 124.4 162 46.3
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 4.2e-26 122.1 94 67.0
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 4.2e-26 122.1 159 45.9
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 9.3e-26 120.9 103 62.1
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 1.3e-24 117.1 95 64.2
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 1.8e-24 116.7 92 71.7
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.5e-23 113.6 128 53.1
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 7.4e-23 111.3 119 55.5
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 2.1e-22 109.8 145 43.4
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 8.1e-22 107.8 87 64.4
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 9.0e-21 104.4 144 41.7
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 1.5e-20 103.6 170 38.8
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 5.8e-20 101.7 145 42.8
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 5.8e-20 101.7 144 43.1
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.1e-18 97.4 109 46.8
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 5.5e-18 95.1 99 51.5
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 7.1e-18 94.7 144 37.5
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.2e-17 94.0 107 50.5
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 5.1e-16 88.6 70 64.3
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 6.7e-16 88.2 70 61.4
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 2.5e-15 86.3 145 35.9
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.5e-15 86.3 99 47.5
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 2.8e-14 82.8 117 41.0
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 3.1e-13 79.3 145 34.5
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.2e-12 77.4 89 48.3
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 5.8e-12 75.1 66 59.1
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.0e-11 74.3 58 67.2
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 7.1e-10 68.2 64 50.0
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 6.1e-09 65.1 109 41.3


User provided reference genes

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