Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3540 Fragaria x ananassa HOM05D001518 ORTHO05D006498 2.7e-250 868.2 446 100.0
FvH4_7g25380 Fragaria vesca HOM05D001518 ORTHO05D006498 2.9e-244 848.2 440 99.1
FAN03G1866 Fragaria x ananassa HOM05D001518 ORTHO05D006498 8.7e-233 810.1 441 95.0
RcHm_v2.0_Chr1g0371311 Rosa chinensis HOM05D001518 ORTHO05D006498 2.3e-209 732.3 453 84.3
FAN10G1819 Fragaria x ananassa HOM05D001518 ORTHO05D006498 3.9e-209 731.5 439 88.4
MD01G1160000 Malus domestica HOM05D001518 ORTHO05D006498 1.8e-190 669.5 453 77.5
Prupe.2G258000 Prunus persica HOM05D001518 ORTHO05D006498 2.0e-189 666.0 452 77.7
TAR623G1694 Trochodendron aralioides HOM05D001518 ORTHO05D006498 1.2e-165 587.0 440 69.1
Haze_17295 Corylus avellana HOM05D001518 ORTHO05D006498 1.7e-164 583.2 444 70.0
Dinv21799 Davidia involucrata HOM05D001518 ORTHO05D006498 3.8e-164 582.0 410 73.2
Hma1.2p1_1687F.1_g297510 Hydrangea macrophylla HOM05D001518 ORTHO05D006498 5.0e-164 581.6 439 68.6
Cfa001256 Carpinus fangiana HOM05D001518 ORTHO05D006498 2.5e-163 579.3 445 69.9
Manes.10G007200 Manihot esculenta HOM05D001518 ORTHO05D006498 2.3e-161 572.8 447 69.1
Nn2g11022 Nelumbo nucifera HOM05D001518 ORTHO05D006498 2.6e-160 569.3 404 72.3
QL08p064026 Quercus lobata HOM05D001518 ORTHO05D006498 2.6e-160 569.3 388 75.5
CiPaw.01G302600 Carya illinoinensis HOM05D001518 ORTHO05D006498 3.4e-160 568.9 442 67.6
ClCG11G005950 Citrullus lanatus HOM05D001518 ORTHO05D006498 9.8e-160 567.4 461 65.7
Ciclev10030811m.g Citrus clementina HOM05D001518 ORTHO05D006498 6.3e-159 564.7 369 77.2
CsaV3_6G002050 Cucumis sativus L. HOM05D001518 ORTHO05D006498 1.6e-157 560.1 457 65.6
Nitab4.5_0001291g0130 Nicotiana tabacum HOM05D001518 ORTHO05D006498 2.7e-157 559.3 453 66.4
Lj6g0017401 Lotus japonicus HOM05D001518 ORTHO05D006498 5.9e-157 558.1 464 65.7
Phvul.001G247100 Phaseolus vulgaris HOM05D001518 ORTHO05D006498 7.8e-157 557.8 448 66.7
MELO3C008325.2 Cucumis melo HOM05D001518 ORTHO05D006498 3.8e-156 555.4 456 65.6
FAN01G2884 Fragaria x ananassa HOM05D001518 ORTHO05D006498 1.5e-155 553.5 282 97.9
CANSAT56G0726 Cannabis sativa HOM05D001518 ORTHO05D006498 1.9e-155 553.1 413 69.5
Sed0021910 Sechium edule HOM05D001518 ORTHO05D006498 2.5e-155 552.7 457 65.0
Psat5g126120 Pisum sativum HOM05D001518 ORTHO05D006498 4.3e-155 552.0 446 65.0
Aqoxy2G00769 Aquilegia oxysepala HOM05D001518 ORTHO05D006498 7.3e-155 551.2 434 66.8
CAN.G659.7 Capsicum annuum HOM05D001518 ORTHO05D006498 7.3e-155 551.2 447 65.8
PSO339G3904 Papaver somniferum HOM05D001518 ORTHO05D006498 7.3e-155 551.2 415 68.4
PSO384G4720 Papaver somniferum HOM05D001518 ORTHO05D006498 7.3e-155 551.2 413 69.0
Ca_15169_v3 Cicer arietinum L. HOM05D001518 ORTHO05D006498 1.6e-154 550.1 460 64.6
Lj8A60T48 Lonicera japonica HOM05D001518 ORTHO05D006498 2.8e-154 549.3 441 66.2
Sopen06g016190 Solanum pennellii HOM05D001518 ORTHO05D006498 2.8e-154 549.3 444 65.3
Solyc06g050620.3 Solanum lycopersicum HOM05D001518 ORTHO05D006498 4.7e-154 548.5 444 65.1
arahy.Tifrunner.gnm1.ann1.1N0RH8 Arachis hypogaea HOM05D001518 ORTHO05D006498 1.4e-153 547.0 451 65.6
VMungo1383G3076 Vigna mungo HOM05D001518 ORTHO05D006498 1.4e-153 547.0 449 65.0
Rhsim03G0148300 Rhododendron simsii HOM05D001518 ORTHO05D006498 5.2e-153 545.0 461 63.8
arahy.Tifrunner.gnm1.ann1.73F65L Arachis hypogaea HOM05D001518 ORTHO05D006498 1.5e-152 543.5 450 65.6
Lsat_1_v5_gn_2_125780 Lactuca sativa HOM05D001518 ORTHO05D006498 2.6e-152 542.7 449 64.6
Migut.F00620 Erythranthe guttata HOM05D001518 ORTHO05D006498 7.5e-152 541.2 407 68.6
PGR044G0181 Punica granatum HOM05D001518 ORTHO05D006498 9.8e-152 540.8 423 68.1
Sc11g0005470 Simmondsia chinensis HOM05D001518 ORTHO05D006498 9.8e-152 540.8 455 64.4
Medtr3g071970 Medicago truncatula HOM05D001518 ORTHO05D006498 4.1e-150 535.4 448 62.7
PGSC0003DMG400023943 Solanum tuberosum HOM05D001518 ORTHO05D006498 2.0e-149 533.1 444 63.5
Sed0027098 Sechium edule HOM05D001518 ORTHO05D006498 6.0e-149 531.6 465 62.8
HanXRQChr07g0203501 Helianthus annuus HOM05D001518 ORTHO05D006498 7.8e-149 531.2 382 72.0
Sabra08G0055300 Salix brachista HOM05D001518 ORTHO05D006498 3.0e-148 529.3 440 65.5
Nitab4.5_0002854g0050 Nicotiana tabacum HOM05D001518 ORTHO05D006498 2.5e-147 526.2 449 63.9
Glyma.18G023200 Glycine max HOM05D001518 ORTHO05D006498 3.3e-147 525.8 405 67.2
Thecc.09G230400 Theobroma cacao HOM05D001518 ORTHO05D006498 3.3e-147 525.8 441 63.9
Aa31LG10G11040 Aethionema arabicum HOM05D001518 ORTHO05D006498 4.3e-147 525.4 382 70.2
AT3G56140 Arabidopsis thaliana HOM05D001518 ORTHO05D006498 1.2e-146 523.9 451 62.7
AL5G37460 Arabidopsis lyrata HOM05D001518 ORTHO05D006498 1.6e-146 523.5 451 63.2
SGA_v2.0_scaffold145G36000 Striga asiatica HOM05D001518 ORTHO05D006498 1.6e-146 523.5 405 66.4
BcaC08g44762 Brassica carinata HOM05D001518 ORTHO05D006498 3.6e-146 522.3 315 80.3
Carub.0005s2289 Capsella rubella HOM05D001518 ORTHO05D006498 3.6e-146 522.3 443 63.9
Thhalv10005804m.g Eutrema salsugineum HOM05D001518 ORTHO05D006498 6.2e-146 521.5 315 79.4
Glyma.11G233800 Glycine max HOM05D001518 ORTHO05D006498 6.2e-146 521.5 449 63.5
Hund15866 Selenicereus undatus HOM05D001518 ORTHO05D006498 6.2e-146 521.5 371 71.7
Cpa.g.sc19.113 Carica papaya HOM05D001518 ORTHO05D006498 8.0e-146 521.2 455 63.3
BraA07t29945Z Brassica rapa HOM05D001518 ORTHO05D006498 1.1e-145 520.8 315 80.3
AUR62012321 Chenopodium quinoa HOM05D001518 ORTHO05D006498 1.1e-145 520.8 381 70.1
Duzib168G1941 Durio zibethinus HOM05D001518 ORTHO05D006498 4.0e-145 518.8 382 70.2
DCAR_011861 Daucus carota HOM05D001518 ORTHO05D006498 6.8e-145 518.1 383 70.0
C06p23300 Brassica napus HOM05D001518 ORTHO05D006498 1.2e-144 517.3 315 79.7
BolC6t37503H Brassica oleracea HOM05D001518 ORTHO05D006498 1.2e-144 517.3 315 79.7
ECA238G1259 Erigeron canadensis HOM05D001518 ORTHO05D006498 1.5e-144 516.9 411 66.2
Lj1C962G10 Lonicera japonica HOM05D001518 ORTHO05D006498 3.4e-144 515.8 465 61.3
THA.LOC104810131 Tarenaya hassleriana HOM05D001518 ORTHO05D006498 5.8e-144 515.0 313 79.9
Ah.16g104010 Amaranthus hybridus HOM05D001518 ORTHO05D006498 7.5e-144 514.6 405 65.7
A07p22800 Brassica napus HOM05D001518 ORTHO05D006498 7.5e-144 514.6 413 66.1
Eucgr.J00163 Eucalyptus grandis HOM05D001518 ORTHO05D006498 9.8e-144 514.2 311 79.7
SalBow3G0728 Salvia bowleyana HOM05D001518 ORTHO05D006498 9.8e-144 514.2 403 64.8
BcaB02g07667 Brassica carinata HOM05D001518 ORTHO05D006498 1.3e-143 513.8 316 79.1
TWI53G0536 Tripterygium wilfordii HOM05D001518 ORTHO05D006498 1.7e-143 513.5 435 63.7
AL4G38220 Arabidopsis lyrata HOM05D001518 ORTHO05D006498 2.2e-143 513.1 316 78.2
Sp5g06390 Schrenkiella parvula HOM05D001518 ORTHO05D006498 3.7e-143 512.3 450 62.4
AT2G40400 Arabidopsis thaliana HOM05D001518 ORTHO05D006498 6.4e-143 511.5 316 77.8
unitig_62.g23927 Utricularia gibba HOM05D001518 ORTHO05D006498 6.4e-143 511.5 377 67.1
Lalb_Chr08g0231381 Lupinus albus HOM05D001518 ORTHO05D006498 8.3e-143 511.1 413 66.1
Lalb_Chr11g0075101 Lupinus albus HOM05D001518 ORTHO05D006498 8.3e-143 511.1 324 78.4
A04p30770 Brassica napus HOM05D001518 ORTHO05D006498 2.4e-142 509.6 357 72.0
BraA04t18535Z Brassica rapa HOM05D001518 ORTHO05D006498 2.4e-142 509.6 357 72.0
C04p68170 Brassica napus HOM05D001518 ORTHO05D006498 4.1e-142 508.8 374 69.0
Gohir.A07G124600 Gossypium hirsutum HOM05D001518 ORTHO05D006498 5.4e-142 508.4 315 78.1
Sp4g22720 Schrenkiella parvula HOM05D001518 ORTHO05D006498 7.0e-142 508.1 315 77.8
BolC4t28323H Brassica oleracea HOM05D001518 ORTHO05D006498 4.6e-141 505.4 313 77.6
CARHR135480 Cardamine hirsuta HOM05D001518 ORTHO05D006498 7.8e-141 504.6 316 76.6
AUR62022961 Chenopodium quinoa HOM05D001518 ORTHO05D006498 5.1e-140 501.9 438 62.8
ATR0594G213 Amborella trichopoda HOM05D001518 ORTHO05D006498 8.6e-140 501.1 425 61.4
Gorai.001G139200 Gossypium raimondii HOM05D001518 ORTHO05D006498 8.6e-140 501.1 381 66.9
Carub.0004s2264 Capsella rubella HOM05D001518 ORTHO05D006498 1.1e-139 500.7 316 76.6
Thhalv10016304m.g Eutrema salsugineum HOM05D001518 ORTHO05D006498 1.9e-139 500.0 444 60.4
Aa31LG5G19180 Aethionema arabicum HOM05D001518 ORTHO05D006498 2.5e-139 499.6 381 66.1
Gohir.D07G128900 Gossypium hirsutum HOM05D001518 ORTHO05D006498 7.3e-139 498.0 315 76.5
COL.COLO4_24867 Corchorus olitorius HOM05D001518 ORTHO05D006498 6.2e-138 495.0 316 75.9
EL10Ac2g04913 Beta vulgaris HOM05D001518 ORTHO05D006498 3.4e-136 489.2 480 57.3
GSVIVG01032735001 Vitis vinifera HOM05D001518 ORTHO05D006498 6.4e-135 485.0 283 83.7
CDE07G0354 Ceratophyllum demersum HOM05D001518 ORTHO05D006498 5.4e-134 481.9 308 75.3
HPP92_019734 Vanilla planifolia HOM05D001518 ORTHO05D006498 6.0e-133 478.4 412 61.4
SGA_v2.0_scaffold44G16654 Striga asiatica HOM05D001518 ORTHO05D006498 1.0e-132 477.6 405 61.7
Os01g0826900 Oryza sativa ssp. japonica HOM05D001518 ORTHO05D006498 3.6e-130 469.2 360 67.2
Zm00001eb149270 Zea mays HOM05D001518 ORTHO05D006498 3.6e-130 469.2 371 65.0
vmacro06911 Vaccinium macrocarpon HOM05D001518 ORTHO05D006498 1.1e-129 467.6 275 84.0
Cc02_g05880 Coffea canephora HOM05D001518 ORTHO05D006498 2.1e-125 453.4 289 76.5
Actinidia29734 Actinidia chinensis HOM05D001518 ORTHO05D006498 3.2e-118 429.5 455 55.8
Peaxi162Scf00284g00235 Petunia axillaris HOM05D001518 ORTHO05D006498 5.1e-116 422.2 438 56.4
Zm00001eb351960 Zea mays HOM05D001518 ORTHO05D006498 4.0e-113 412.5 432 54.6
Pp3c3_35080 Physcomitrium patens HOM05D001518 ORTHO05D006498 2.5e-102 376.7 313 58.8
Oeu008086.2 Olea europaea HOM05D001518 ORTHO05D006498 2.7e-101 373.2 224 80.8
SMO164G0201 Selaginella moellendorffii HOM05D001518 ORTHO05D006498 7.9e-101 371.7 377 50.1
Potri.008G074300 Populus trichocarpa HOM05D001518 ORTHO05D006498 6.7e-100 368.6 219 83.6
MBI03_g45955_MAGBIO Magnolia biondii HOM05D001518 ORTHO05D006498 8.7e-100 368.2 224 79.9
CARHR166290 Cardamine hirsuta HOM05D001518 ORTHO05D006498 1.3e-98 364.4 219 80.4
Pp3c8_1750 Physcomitrium patens HOM05D001518 ORTHO05D006498 2.8e-98 363.2 309 56.6
AagrBONN_evm.TU.Sc2ySwM_228.3192 Anthoceros agrestis HOM05D001518 ORTHO05D006498 9.3e-94 348.2 348 51.4
Mapoly0059s0064 Marchantia polymorpha HOM05D001518 ORTHO05D006498 4.6e-93 345.9 395 47.1
Atru.chr12.120 Acer truncatum HOM05D001518 ORTHO05D006498 7.4e-91 338.6 199 85.4
Migut.F01461 Erythranthe guttata HOM05D001518 ORTHO05D006498 7.7e-88 328.6 231 73.2
CBR_g38031 Chara braunii HOM05D001518 ORTHO05D006498 4.4e-75 286.2 380 41.8
TPR.G29216 Trifolium pratense HOM05D001518 ORTHO05D006498 3.0e-68 263.5 233 57.9
SalBow5G3910 Salvia bowleyana HOM05D001518 ORTHO05D006498 3.9e-68 263.1 184 72.8
SalBow5G2006 Salvia bowleyana HOM05D001518 ORTHO05D006498 9.8e-59 231.9 221 56.6
FAN06G3146 Fragaria x ananassa HOM05D001518 ORTHO05D006498 8.0e-53 212.2 107 100.0
Zm00001eb149820 Zea mays HOM05D001518 ORTHO05D006498 1.8e-52 211.1 141 72.3
CSS0002812 Camellia sinensis var. sinensis HOM05D001518 ORTHO05D006498 3.0e-52 210.3 130 80.0
Migut.F01462 Erythranthe guttata HOM05D001518 ORTHO05D006498 2.8e-37 160.6 182 51.6
Manes.14G015672 Manihot esculenta HOM05D001518 ORTHO05D006498 2.8e-37 160.6 99 80.8
Atru.chr12.119 Acer truncatum HOM05D001518 ORTHO05D006498 3.4e-35 153.7 90 77.8
Zm00001eb441710 Zea mays HOM05D001518 ORTHO05D006498 9.2e-33 145.6 79 87.3
C04p68190 Brassica napus HOM05D001518 ORTHO05D006498 8.6e-23 112.5 68 76.5
AL1G44650 Arabidopsis lyrata HOM05D001518 ORTHO05D006498 1.5e-22 111.7 75 70.7
HPP92_019705 Vanilla planifolia HOM05D001518 ORTHO05D006498 1.5e-22 111.7 179 43.0
AL4G11590 Arabidopsis lyrata HOM05D001518 ORTHO05D006498 9.5e-22 109.0 75 68.0
Manes.07G135966 Manihot esculenta HOM05D001518 ORTHO05D006498 5.6e-14 83.2 58 60.3
SEGI_11999 Sequoiadendron giganteum HOM05D001518 ORTHO05D006498 4.7e-13 80.1 117 44.4
Pp3c10_3610 Physcomitrium patens HOM05D001518 ORTHO05D006498 2.0e-11 74.7 66 54.5
TAR636G0404 Trochodendron aralioides HOM05D001518 ORTHO05D006498 3.8e-10 70.5 40 75.0


User provided reference genes

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