Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 1.5e-53 212.6 106 100.0
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.5e-53 212.6 106 100.0
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.5e-53 212.6 106 100.0
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.2e-52 209.5 106 97.2
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.2e-52 209.5 106 97.2
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.6e-52 208.0 106 97.2
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.6e-52 208.0 106 97.2
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 1.8e-43 179.1 110 84.5
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 1.4e-24 116.3 106 61.3
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 2.3e-22 109.0 86 62.8
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 3.9e-22 108.2 106 54.7
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 1.9e-21 105.9 107 56.1
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 1.9e-21 105.9 86 59.3
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 7.3e-21 104.0 106 55.7
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 1.2e-20 103.2 106 54.7
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 1.1e-19 100.1 82 59.8
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 4.0e-19 98.2 102 53.9
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 5.8e-18 94.4 106 52.8
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 9.8e-18 93.6 89 53.9
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 9.8e-18 93.6 103 50.5
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 9.8e-18 93.6 102 50.0
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 1.7e-17 92.8 87 51.7
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 2.9e-17 92.0 102 50.0
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 3.7e-17 91.7 87 49.4
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 4.9e-17 91.3 102 49.0
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 2.4e-16 89.0 105 48.6
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 2.4e-16 89.0 82 54.9
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 4.1e-16 88.2 79 55.7
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 5.4e-16 87.8 86 54.7
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 7.1e-16 87.4 83 50.6
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 1.2e-15 86.7 80 56.2
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 1.6e-15 86.3 81 58.0
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 1.6e-15 86.3 82 52.4
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 2.7e-15 85.5 85 48.2
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 1.3e-14 83.2 82 57.3
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 1.3e-14 83.2 105 44.8
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 1.3e-14 83.2 98 48.0
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 1.3e-14 83.2 82 51.2
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 2.3e-14 82.4 102 45.1
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 2.3e-14 82.4 105 42.9
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 3.9e-14 81.6 83 51.8
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 6.6e-14 80.9 100 48.0
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 6.6e-14 80.9 80 52.5
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 8.6e-14 80.5 85 51.8
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 8.6e-14 80.5 84 50.0
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 1.5e-13 79.7 100 45.0
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.9e-13 79.3 85 48.2
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 4.3e-13 78.2 101 42.6
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 4.3e-13 78.2 85 48.2
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 5.6e-13 77.8 74 55.4
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 5.6e-13 77.8 100 43.0
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 9.5e-13 77.0 74 54.1
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 9.5e-13 77.0 78 53.8
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 1.2e-12 76.6 96 43.8
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 1.6e-12 76.3 74 54.1
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 2.1e-12 75.9 85 47.1
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 2.8e-12 75.5 79 53.2
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 2.8e-12 75.5 81 46.9
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 3.6e-12 75.1 85 43.5
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 3.6e-12 75.1 85 43.5
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 3.6e-12 75.1 76 56.6
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 6.2e-12 74.3 77 57.1
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 6.2e-12 74.3 99 43.4
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 6.2e-12 74.3 73 54.8
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 1.4e-11 73.2 76 55.3
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 1.8e-11 72.8 81 44.4
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.3e-11 72.4 74 51.4
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 2.3e-11 72.4 77 55.8
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 2.3e-11 72.4 102 43.1
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 3.1e-11 72.0 78 47.4
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 5.2e-11 71.2 77 48.1
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 5.2e-11 71.2 74 52.7
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 6.8e-11 70.9 80 48.8
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 6.8e-11 70.9 84 46.4
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 8.9e-11 70.5 101 40.6
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 1.2e-10 70.1 77 49.4
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 1.5e-10 69.7 77 51.9
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 1.5e-10 69.7 79 46.8
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 2.6e-10 68.9 85 38.8
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 2.6e-10 68.9 77 45.5
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 5.8e-10 67.8 79 48.1
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 5.8e-10 67.8 82 46.3
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 5.8e-10 67.8 64 56.2
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 7.6e-10 67.4 83 43.4
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 9.9e-10 67.0 79 48.1
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 2.2e-09 65.9 62 56.5
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 2.9e-09 65.5 63 50.8
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 3.8e-09 65.1 82 46.3
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 4.9e-09 64.7 62 51.6
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 6.4e-09 64.3 79 43.0
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 6.4e-09 64.3 62 53.2
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 6.4e-09 64.3 62 53.2
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 1.1e-08 63.5 77 46.8
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 1.9e-08 62.8 64 53.1
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 2.4e-08 62.4 111 36.0
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 3.2e-08 62.0 81 40.7
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.6e-07 59.7 68 42.6
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.6e-07 59.7 68 42.6
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 1.6e-07 59.7 49 59.2
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 2.7e-07 58.9 61 45.9
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 3.5e-07 58.5 63 41.3
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 6.0e-07 57.8 70 50.0
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 6.0e-07 57.8 70 50.0
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 7.8e-07 57.4 66 45.5
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 7.8e-07 57.4 54 57.4
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.0e-06 57.0 86 39.5
Pp3c5_22300 Physcomitrium patens HOM05D006948 ORTHO05D008703 3.0e-06 55.5 82 42.7
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 3.9e-06 55.1 70 42.9
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 8.6e-06 53.9 101 30.7


User provided reference genes

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