Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 3710.6 1945 100.0
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 3659.4 1947 98.4
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 3640.9 1923 99.2
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 3538.8 1945 94.9
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 3514.5 1948 94.0
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 3491.8 1941 93.9
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 3450.2 1923 94.3
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 3167.9 1946 87.1
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2887.4 1941 79.4
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2845.5 1946 77.6
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2412.5 1983 66.3
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2392.1 1953 66.9
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2356.6 1964 64.9
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2354.3 1952 65.5
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2337.8 1962 65.5
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2327.0 2007 63.7
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2323.1 2108 62.0
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2314.7 1967 64.0
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2307.3 2005 64.2
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2303.1 1967 63.6
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2302.7 1958 65.0
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2296.5 1964 63.7
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2295.0 1965 63.6
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2290.8 2002 63.1
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2251.1 1987 62.4
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 2186.4 1947 62.4
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2146.3 1967 60.1
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 2144.0 1947 60.5
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2138.6 1946 60.3
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 2129.8 2009 59.9
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 2121.3 1966 59.8
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2117.4 1543 69.5
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 2115.1 1960 60.4
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2112.8 1960 59.2
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 2110.1 1823 62.6
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2104.3 1969 59.7
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 2099.7 2010 59.2
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 2098.9 1944 60.3
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 2098.2 1974 60.0
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 2094.7 1984 58.3
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2090.1 2004 58.5
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 2088.9 1955 58.8
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2085.8 1542 68.7
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2081.6 1975 59.6
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 2079.7 1605 66.4
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 2078.5 2010 58.2
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 2065.4 1953 60.2
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 2055.8 1997 58.7
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 2045.4 1973 58.8
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 2039.2 1932 60.1
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 2000.3 1987 57.1
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1983.4 2107 53.9
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1971.1 1607 63.7
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1962.2 1997 55.8
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1958.0 2064 54.8
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1921.4 1965 56.3
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1919.8 2125 53.8
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1916.7 1956 56.6
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1911.7 1950 56.6
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1909.8 1993 55.1
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1909.0 1829 58.0
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1903.6 1972 55.5
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1902.1 1828 57.9
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1899.0 1978 55.2
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1892.9 1826 57.6
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1887.8 1949 55.6
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1887.8 2022 53.5
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1884.8 1825 57.7
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1884.0 1926 56.2
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1878.6 1823 57.8
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1877.4 1466 66.0
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1872.4 2083 53.1
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1867.8 2007 53.4
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1857.8 1699 61.0
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1843.2 1986 54.5
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1835.8 1978 54.4
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1825.4 1331 69.7
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1824.3 1693 58.0
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1817.4 1861 54.9
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1801.2 1990 52.6
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1799.6 1872 54.2
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1741.5 1955 51.4
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1741.5 1881 52.0
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1739.9 1882 52.3
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1733.8 1980 52.8
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1729.1 1952 51.5
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1725.7 2007 51.0
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1702.6 1909 51.4
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1701.8 1807 54.0
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1701.8 1807 54.0
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1701.8 1965 50.3
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1697.2 1991 50.7
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1696.4 1964 51.3
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1654.4 1726 53.5
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1650.2 1238 68.0
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1628.6 1478 58.1
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1613.2 1951 49.8
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1612.0 1960 49.1
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1597.0 1965 48.1
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1595.1 1194 70.8
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1128.2 1706 40.9
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1105.1 1135 58.0
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 0.0e+00 1084.7 1882 37.7
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 8.3e-304 1048.1 963 59.1
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 1.8e-303 1047.0 1659 39.6
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 3.8e-301 1039.3 1694 39.3
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 6.3e-296 1021.9 1874 38.1
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 2.0e-294 1016.9 1925 37.5
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 2.8e-283 979.9 900 58.6
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 8.3e-280 968.4 1168 51.2
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 6.0e-270 935.6 1117 53.4
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.7e-261 907.5 992 55.7
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 2.0e-249 867.5 1077 48.7
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.5e-241 841.3 1041 47.6
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.9e-220 771.2 1465 34.5
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 7.9e-214 749.2 1928 30.0
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 6.3e-195 686.4 542 66.4
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 4.7e-190 670.2 576 60.8
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 9.4e-183 646.0 1172 37.4
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 3.9e-168 597.4 466 66.3
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 4.3e-151 540.8 832 43.0
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.2e-146 524.6 663 46.3
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 9.3e-138 496.5 559 48.3
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.0e-132 478.8 562 45.9
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 9.3e-130 469.9 732 47.7
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 2.8e-126 458.4 553 47.9
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 2.6e-100 372.1 277 68.6
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 1.6e-76 293.1 459 41.6
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 1.5e-74 286.6 379 46.2
FAN06G3220 Fragaria x ananassa HOM05D011336 ORTHO05D017014 5.5e-66 258.1 198 79.3
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 2.3e-64 252.7 382 41.4
FvH4_7g01070 Fragaria vesca HOM05D011336 ORTHO05D017014 1.4e-61 243.4 156 85.9
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 1.2e-55 223.8 252 50.0
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 3.4e-55 222.2 141 86.5
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 2.0e-52 213.0 706 33.9
FAN27G1439 Fragaria x ananassa HOM05D011336 ORTHO05D017014 3.5e-52 212.2 328 50.0
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 5.9e-52 211.5 508 33.1
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 1.1e-45 190.7 343 38.2
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 3.0e-43 182.6 174 54.6
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 6.2e-41 174.9 136 63.2
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.8e-40 173.3 553 33.8
FAN07G2805 Fragaria x ananassa HOM05D011336 ORTHO05D022575 1.5e-39 170.2 305 45.2
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 5.8e-39 168.3 221 39.4
FAN18G0882 Fragaria x ananassa HOM05D011336 ORTHO05D022575 1.9e-34 153.3 304 44.4
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 4.7e-33 148.7 109 69.7
FAN09G4865 Fragaria x ananassa HOM05D011336 ORTHO05D017014 8.1e-33 147.9 255 47.1
FvH4_6g13732 Fragaria vesca HOM05D011336 ORTHO05D022575 6.8e-32 144.8 310 42.3
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 2.0e-31 143.3 163 49.1
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 2.2e-30 139.8 371 32.3
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 4.9e-30 138.7 1210 20.9
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 5.4e-29 135.2 162 48.1
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 3.5e-28 132.5 96 72.9
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 4.6e-28 132.1 85 77.6
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 3.9e-27 129.0 163 44.8
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 3.3e-26 125.9 482 26.6
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.2e-25 124.0 80 70.0
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.2e-25 124.0 224 40.6
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 1.6e-25 123.6 119 55.5
FvH4_7g28240 Fragaria vesca HOM05D011336 ORTHO05D022575 2.8e-25 122.9 141 61.7
FAN11G2008 Fragaria x ananassa HOM05D011336 ORTHO05D022575 1.4e-24 120.6 289 42.6
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 5.2e-24 118.6 125 52.8
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 1.5e-23 117.1 140 48.6
FvH4_6g21810 Fragaria vesca HOM05D011336 ORTHO05D022575 1.5e-23 117.1 129 62.0
FvH4_3g34060 Fragaria vesca HOM05D011336 ORTHO05D017014 2.0e-23 116.7 86 86.0
FAN11G2549 Fragaria x ananassa HOM05D011336 ORTHO05D017014 2.6e-23 116.3 86 72.1
FAN20G2798 Fragaria x ananassa HOM05D011336 ORTHO05D004846 6.4e-22 111.7 360 35.8
FAN20G1452 Fragaria x ananassa HOM05D011336 ORTHO05D017014 2.4e-21 109.8 302 35.8
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 3.0e-19 102.8 146 45.9
FAN25G1306 Fragaria x ananassa HOM05D011336 ORTHO05D017014 5.1e-19 102.1 136 50.7
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 4.0e-16 92.4 186 37.1
FvH4_3g16180 Fragaria vesca HOM05D011336 ORTHO05D004846 9.9e-15 87.8 111 57.7
FAN25G1164 Fragaria x ananassa HOM05D011336 ORTHO05D004846 9.9e-15 87.8 100 55.0
FAN08G3289 Fragaria x ananassa HOM05D004392 ORTHO05D017014 2.9e-14 86.3 58 82.8
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 4.9e-14 85.5 103 51.5
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 1.1e-13 84.3 133 39.8
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 7.1e-13 81.6 55 63.6
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 3.0e-11 76.3 70 54.3
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 5.1e-11 75.5 73 53.4
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 9.6e-10 71.2 57 63.2
Phvul.002G075100 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 2.8e-09 69.7 155 38.7
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 1.8e-08 67.0 92 43.5
FAN07G0466 Fragaria x ananassa HOM05D004392 ORTHO05D017014 9.9e-07 61.2 50 74.0


User provided reference genes

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