Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.2e-95 351.3 168 100.0
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 9.3e-95 350.1 168 99.4
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 4.6e-94 347.8 168 98.2
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.6e-94 347.8 168 98.2
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 6.2e-91 337.4 168 95.2
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 4.3e-76 288.1 168 78.0
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 8.1e-75 283.9 163 77.9
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 6.9e-74 280.8 168 74.4
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 9.0e-74 280.4 168 74.4
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 1.4e-71 273.1 168 71.4
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 1.4e-71 273.1 167 70.7
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 1.4e-71 273.1 167 70.7
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 5.5e-71 271.2 170 70.6
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 7.1e-71 270.8 168 70.2
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 6.0e-70 267.7 169 71.6
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 7.9e-70 267.3 168 69.6
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 3.9e-69 265.0 167 67.1
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 3.9e-69 265.0 168 66.1
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 3.9e-69 265.0 168 67.9
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 6.7e-69 264.2 168 67.3
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 3.3e-68 261.9 168 68.5
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 9.6e-68 260.4 168 68.5
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.3e-67 260.0 168 69.0
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 3.7e-67 258.5 168 67.3
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 3.7e-67 258.5 168 68.5
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 4.8e-67 258.1 168 66.1
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 6.3e-67 257.7 168 67.3
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 6.3e-67 257.7 125 96.8
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.8e-66 256.1 168 64.9
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 4.1e-66 255.0 168 66.7
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 5.3e-66 254.6 168 64.3
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 5.3e-66 254.6 168 66.1
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 1.5e-65 253.1 168 66.7
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 2.0e-65 252.7 168 65.5
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 2.0e-65 252.7 168 64.9
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 2.6e-65 252.3 170 64.1
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 3.4e-65 251.9 172 64.5
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.4e-65 251.9 168 66.7
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 4.5e-65 251.5 168 66.1
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 4.5e-65 251.5 168 66.1
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 5.9e-65 251.1 168 64.9
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 5.9e-65 251.1 168 66.7
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 2.2e-64 249.2 170 63.5
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 2.9e-64 248.8 168 67.3
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 5.0e-64 248.1 168 64.3
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.1e-63 246.9 168 61.9
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.1e-63 246.9 168 61.9
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 1.4e-63 246.5 170 64.7
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.4e-63 246.5 168 64.3
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 2.5e-63 245.7 170 64.7
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 2.5e-63 245.7 168 63.1
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 3.2e-63 245.4 170 64.1
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 4.2e-63 245.0 168 63.1
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 5.5e-63 244.6 168 63.1
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 7.2e-63 244.2 168 63.1
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 7.2e-63 244.2 168 63.1
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 7.2e-63 244.2 168 63.1
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 7.2e-63 244.2 168 63.1
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 7.2e-63 244.2 168 63.7
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 9.3e-63 243.8 168 64.3
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 9.3e-63 243.8 170 63.5
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.6e-62 243.0 168 62.5
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 3.5e-62 241.9 168 62.5
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 4.6e-62 241.5 168 65.5
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 7.9e-62 240.7 168 62.5
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 1.3e-61 240.0 179 59.8
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 1.8e-61 239.6 168 63.1
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 1.8e-61 239.6 168 63.1
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 2.3e-61 239.2 168 62.5
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 3.9e-61 238.4 168 62.5
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 6.7e-61 237.7 168 60.7
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 6.7e-61 237.7 168 62.5
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 8.7e-61 237.3 168 60.1
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 1.9e-60 236.1 168 60.7
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 61.9
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 63.1
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 63.1
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 63.1
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 4.3e-60 235.0 169 62.7
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 4.3e-60 235.0 169 63.3
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 4.3e-60 235.0 168 61.3
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 5.7e-60 234.6 169 63.3
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 1.3e-59 233.4 168 61.3
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 2.2e-59 232.6 168 63.7
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 2.8e-59 232.3 168 61.3
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 6.3e-59 231.1 173 60.1
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 6.3e-59 231.1 169 62.1
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 8.2e-59 230.7 153 69.3
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 9.0e-58 227.3 169 61.5
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 9.0e-58 227.3 169 61.5
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 1.2e-57 226.9 184 58.2
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 1.5e-57 226.5 205 50.7
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 3.4e-57 225.3 188 56.9
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 4.5e-57 224.9 201 52.7
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 1.7e-56 223.0 189 55.6
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 5.0e-56 221.5 168 57.7
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 5.0e-56 221.5 196 52.6
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 5.0e-56 221.5 168 56.5
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 1.4e-55 219.9 182 55.5
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 1.4e-55 219.9 205 52.2
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 3.2e-55 218.8 155 61.3
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 3.2e-55 218.8 168 57.7
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 5.5e-55 218.0 168 60.1
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 7.2e-55 217.6 193 56.0
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 56.5
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 1.6e-54 216.5 168 57.1
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 2.1e-54 216.1 172 57.0
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 2.1e-54 216.1 168 57.1
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 2.7e-54 215.7 141 66.7
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.4e-53 213.4 137 67.9
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 8.8e-53 210.7 188 52.7
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 2.5e-52 209.1 190 53.7
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 6.3e-51 204.5 237 43.0
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 9.1e-50 200.7 168 58.9
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 4.5e-49 198.4 140 62.9
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 5.0e-48 194.9 190 51.1
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 6.5e-48 194.5 169 52.7
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 2.5e-47 192.6 167 55.7
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 3.3e-44 182.2 151 55.0
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 7.0e-42 174.5 145 55.2
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 3.8e-40 168.7 168 50.6
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 5.0e-40 168.3 169 45.0
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.5e-39 166.8 169 45.6
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 1.9e-39 166.4 186 47.3
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 3.2e-39 165.6 173 48.0
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 7.2e-39 164.5 104 68.3
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 4.0e-37 158.7 174 46.6
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 8.8e-37 157.5 111 58.6
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 9.7e-36 154.1 136 50.7
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 2.4e-34 149.4 168 45.8
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.9e-31 139.8 97 63.9
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 1.2e-28 130.6 162 42.6
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 2.6e-28 129.4 169 38.5
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 4.4e-28 128.6 97 55.7
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 4.4e-28 128.6 171 40.4
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 1.3e-24 117.1 142 40.1
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.7e-24 116.7 107 50.5
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 2.9e-24 115.9 169 34.3
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 2.5e-23 112.8 184 33.7
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 4.2e-23 112.1 112 52.7
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 9.4e-23 110.9 163 35.6
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 1.6e-22 110.2 171 33.9
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 3.4e-20 102.4 97 45.4
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 1.5e-15 87.0 67 53.7
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.3e-15 85.9 60 58.3
Sc15g0004100 Simmondsia chinensis HOM05D001775 ORTHO05D006205 5.0e-08 62.0 141 31.9


User provided reference genes

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