Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.0e-60 235.0 115 100.0
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.3e-59 231.1 115 99.1
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 9.6e-59 229.9 117 98.3
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.6e-59 229.9 117 98.3
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.8e-58 228.4 117 97.4
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 3.2e-54 214.9 115 93.0
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.0e-49 196.8 102 98.0
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.4e-48 194.9 104 96.2
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.8e-47 191.4 104 94.2
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 7.6e-24 114.0 115 61.7
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.3e-20 102.4 113 50.4
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 1.5e-19 99.8 128 43.8
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.9e-19 99.4 118 49.2
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 1.9e-19 99.4 113 47.8
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 5.7e-19 97.8 109 49.5
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 7.4e-19 97.4 115 49.6
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 1.3e-18 96.7 103 50.5
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 3.7e-18 95.1 119 47.9
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 4.8e-18 94.7 113 45.1
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 4.8e-18 94.7 116 50.9
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 6.9e-17 90.9 112 47.3
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 9.0e-17 90.5 171 38.0
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 4.5e-16 88.2 127 43.3
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 1.0e-15 87.0 116 45.7
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.3e-15 86.7 98 50.0
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.3e-15 86.7 98 50.0
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 1.3e-15 86.7 121 45.5
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.7e-15 86.3 108 44.4
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.7e-15 86.3 108 44.4
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.7e-15 86.3 98 50.0
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.7e-15 86.3 108 44.4
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 1.7e-15 86.3 98 49.0
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 1.7e-15 86.3 74 55.4
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 2.2e-15 85.9 110 49.1
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 2.9e-15 85.5 71 62.0
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 5.0e-15 84.7 98 52.0
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 8.5e-15 84.0 100 50.0
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 8.5e-15 84.0 107 44.9
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 8.5e-15 84.0 97 51.5
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 1.1e-14 83.6 83 55.4
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 1.4e-14 83.2 78 57.7
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.4e-14 83.2 74 54.1
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.9e-14 82.8 106 47.2
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 1.9e-14 82.8 74 56.8
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.5e-14 82.4 88 54.5
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 3.2e-14 82.0 129 44.2
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 5.5e-14 81.3 70 61.4
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 5.5e-14 81.3 110 41.8
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 5.5e-14 81.3 89 48.3
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 7.2e-14 80.9 127 40.9
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 7.2e-14 80.9 117 43.6
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 9.4e-14 80.5 75 56.0
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 9.4e-14 80.5 78 55.1
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 9.4e-14 80.5 99 45.5
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 1.2e-13 80.1 82 57.3
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.6e-13 79.7 124 41.9
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 2.1e-13 79.3 70 58.6
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 3.6e-13 78.6 115 42.6
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 3.6e-13 78.6 70 55.7
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 4.6e-13 78.2 92 44.6
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 4.6e-13 78.2 124 40.3
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 6.1e-13 77.8 107 43.9
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.0e-12 77.0 116 40.5
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 1.0e-12 77.0 70 58.6
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 1.0e-12 77.0 94 47.9
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 1.4e-12 76.6 100 45.0
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 1.4e-12 76.6 92 47.8
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.4e-12 76.6 85 49.4
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 1.8e-12 76.3 82 51.2
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.8e-12 76.3 94 43.6
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.8e-12 76.3 94 43.6
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 2.3e-12 75.9 81 53.1
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.9e-12 75.1 104 42.3
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.1e-11 73.6 89 48.3
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 1.5e-11 73.2 119 47.1
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.5e-11 73.2 103 46.6
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 1.5e-11 73.2 101 46.5
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 2.5e-11 72.4 70 51.4
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 3.3e-11 72.0 100 45.0
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 4.3e-11 71.6 88 43.2
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 7.4e-11 70.9 82 48.8
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 9.7e-11 70.5 117 43.6
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.3e-10 70.1 106 45.3
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 1.7e-10 69.7 104 41.3
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 3.7e-10 68.6 102 42.2
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 4.8e-10 68.2 100 42.0
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.3e-10 67.8 104 45.2
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 8.2e-10 67.4 73 49.3
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.1e-09 67.0 94 44.7
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.4e-09 66.6 117 37.6
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.8e-09 66.2 90 44.4
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.4e-09 65.9 85 47.1
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 4.1e-09 65.1 60 60.0
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 4.1e-09 65.1 77 49.4
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 6.9e-09 64.3 67 50.7
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.9e-09 64.3 59 54.2
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 9.1e-09 63.9 77 45.5
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 9.1e-09 63.9 76 46.1
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.1e-09 63.9 59 52.5
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.1e-09 63.9 57 54.4
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.1e-09 63.9 59 52.5
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 9.1e-09 63.9 59 52.5
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 9.1e-09 63.9 63 55.6
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 9.1e-09 63.9 55 52.7
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.2e-08 63.5 64 50.0
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 1.2e-08 63.5 64 50.0
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.2e-08 63.5 111 39.6
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.5e-08 63.2 99 39.4
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 2.0e-08 62.8 63 52.4
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 3.4e-08 62.0 103 37.9
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.4e-08 62.0 60 60.0
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 4.5e-08 61.6 82 42.7
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 5.9e-08 61.2 58 53.4
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 5.9e-08 61.2 100 39.0
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.7e-07 59.7 85 40.0
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 1.7e-07 59.7 100 38.0
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 2.2e-07 59.3 58 50.0
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 2.9e-07 58.9 100 38.0
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.8e-07 58.5 59 50.8
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 5.0e-07 58.2 90 42.2
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 5.0e-07 58.2 63 50.8
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 5.0e-07 58.2 78 44.9
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 6.5e-07 57.8 89 40.4
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 6.5e-07 57.8 78 44.9
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 1.1e-06 57.0 74 47.3
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.4e-06 56.6 100 40.0
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.4e-06 56.6 87 39.1
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 1.9e-06 56.2 78 42.3
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 2.5e-06 55.8 100 39.0
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.5e-06 55.8 90 41.1
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 5.5e-06 54.7 86 43.0
Sopen11g003730 Solanum pennellii HOM05D021137 ORTHO05D004438 7.2e-06 54.3 77 39.0
TPR.G31694 Trifolium pratense HOM05D014522 ORTHO05D004438 9.4e-06 53.9 123 39.0


User provided reference genes

Program Settings