Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3801 Fragaria x ananassa HOM05D000938 ORTHO05D003373 2.1e-42 175.3 86 100.0
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 2.4e-38 161.8 80 98.8
FvH4_6g50160 Fragaria vesca HOM05D000938 ORTHO05D003373 4.2e-35 151.0 80 92.5
FAN14G0689 Fragaria x ananassa HOM05D000938 ORTHO05D003373 4.2e-35 151.0 80 92.5
FAN05G0442 Fragaria x ananassa HOM05D000938 ORTHO05D003373 5.5e-35 150.6 80 93.8
FvH4_6g50162 Fragaria vesca HOM05D000938 ORTHO05D003373 3.3e-32 141.4 80 87.5
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 2.2e-31 138.7 74 90.5
RcHm_v2.0_Chr2g0170411 Rosa chinensis HOM05D000938 ORTHO05D003373 1.8e-30 135.6 76 86.8
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 9.1e-30 133.3 75 88.0
Lj2g0012835 Lotus japonicus HOM05D000938 ORTHO05D003373 2.4e-14 82.0 77 53.2
Lj2g0024933 Lotus japonicus HOM05D000938 ORTHO05D003373 9.1e-14 80.1 77 55.8
Psat1g079960 Pisum sativum HOM05D000938 ORTHO05D003373 9.1e-14 80.1 79 49.4
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 2.0e-13 79.0 66 60.6
TPR.G31470 Trifolium pratense HOM05D000938 ORTHO05D003373 2.7e-13 78.6 80 46.2
Potri.009G086100 Populus trichocarpa HOM05D000938 ORTHO05D003373 4.5e-13 77.8 82 43.9
RcHm_v2.0_Chr7g0219521 Rosa chinensis HOM05D000938 ORTHO05D003373 7.7e-13 77.0 67 59.7
RcHm_v2.0_Chr7g0219541 Rosa chinensis HOM05D000938 ORTHO05D003373 1.0e-12 76.6 68 58.8
Glyma.19G013200 Glycine max HOM05D000938 ORTHO05D003373 2.9e-12 75.1 79 49.4
Lalb_Chr21g0319301 Lupinus albus HOM05D000938 ORTHO05D003373 2.9e-12 75.1 75 50.7
Medtr0286s0040 Medicago truncatula HOM05D000938 ORTHO05D003373 2.9e-12 75.1 79 46.8
Medtr6g007975 Medicago truncatula HOM05D000938 ORTHO05D003373 2.9e-12 75.1 79 46.8
QL02p078133 Quercus lobata HOM05D000938 ORTHO05D003373 5.0e-12 74.3 90 44.4
QL05p000021 Quercus lobata HOM05D000938 ORTHO05D003373 5.0e-12 74.3 86 43.0
QL93p0205_0187 Quercus lobata HOM05D000938 ORTHO05D003373 5.0e-12 74.3 90 44.4
QL93p0205_0202 Quercus lobata HOM05D000938 ORTHO05D003373 1.5e-11 72.8 79 46.8
TAR629G1733 Trochodendron aralioides HOM05D000938 ORTHO05D003373 1.9e-11 72.4 71 49.3
QL04p034944 Quercus lobata HOM05D000938 ORTHO05D003373 2.5e-11 72.0 86 41.9
RcHm_v2.0_Chr2g0170431 Rosa chinensis HOM05D000938 ORTHO05D003373 3.3e-11 71.6 65 56.9
RcHm_v2.0_Chr6g0283951 Rosa chinensis HOM05D000938 ORTHO05D003373 3.3e-11 71.6 67 50.7
RcHm_v2.0_Chr6g0283981 Rosa chinensis HOM05D000938 ORTHO05D003373 4.2e-11 71.2 68 48.5
Ca_04222_v3 Cicer arietinum L. HOM05D000938 ORTHO05D003373 5.5e-11 70.9 79 48.1
Glyma.13G069800 Glycine max HOM05D000938 ORTHO05D003373 7.2e-11 70.5 87 42.5
Medtr3g467360 Medicago truncatula HOM05D000938 ORTHO05D003373 7.2e-11 70.5 79 44.3
Potri.001G291033 Populus trichocarpa HOM05D000938 ORTHO05D003373 9.5e-11 70.1 76 44.7
Potri.001G291166 Populus trichocarpa HOM05D000938 ORTHO05D003373 9.5e-11 70.1 76 44.7
Psat1g079240 Pisum sativum HOM05D000938 ORTHO05D003373 1.2e-10 69.7 63 50.8
Ca_04224_v3 Cicer arietinum L. HOM05D000039 ORTHO05D001729 1.6e-10 69.3 61 50.8
Medtr3g467350 Medicago truncatula HOM05D000938 ORTHO05D003373 1.6e-10 69.3 79 44.3
Medtr6g007985 Medicago truncatula HOM05D000938 ORTHO05D003373 1.6e-10 69.3 79 46.8
Medtr6g008015 Medicago truncatula HOM05D000938 ORTHO05D003373 1.6e-10 69.3 79 46.8
QL02p078066 Quercus lobata HOM05D000938 ORTHO05D003373 1.6e-10 69.3 86 40.7
Lj1g0017446 Lotus japonicus HOM05D000938 ORTHO05D003373 2.8e-10 68.6 58 58.6
Lj2g0002792 Lotus japonicus HOM05D000938 ORTHO05D003373 2.8e-10 68.6 85 43.5
Potri.001G290600 Populus trichocarpa HOM05D000938 ORTHO05D003373 2.8e-10 68.6 76 46.1
Ca_15057_v3 Cicer arietinum L. HOM05D000938 ORTHO05D003373 3.6e-10 68.2 79 43.0
Glyma.13G069000 Glycine max HOM05D000938 ORTHO05D003373 4.7e-10 67.8 88 43.2
Lj2g0010048 Lotus japonicus HOM05D000938 ORTHO05D003373 4.7e-10 67.8 52 63.5
Potri.019G005256 Populus trichocarpa HOM05D000938 ORTHO05D003373 4.7e-10 67.8 81 39.5
MD09G1039000 Malus domestica HOM05D000938 ORTHO05D003373 6.1e-10 67.4 66 48.5
Ciclev10011372m.g Citrus clementina HOM05D000938 ORTHO05D003373 1.0e-09 66.6 67 50.7
Phvul.004G020000 Phaseolus vulgaris HOM05D000938 ORTHO05D003373 1.0e-09 66.6 80 46.2
QL02p078026 Quercus lobata HOM05D000938 ORTHO05D003373 1.0e-09 66.6 82 43.9
RcHm_v2.0_Chr2g0170561 Rosa chinensis HOM05D000938 ORTHO05D003373 1.0e-09 66.6 73 50.7
CiPaw.03G034900 Carya illinoinensis HOM05D000938 ORTHO05D003373 1.4e-09 66.2 74 50.0
MD09G1038700 Malus domestica HOM05D000938 ORTHO05D003373 1.4e-09 66.2 64 48.4
Medtr6g007980 Medicago truncatula HOM05D000938 ORTHO05D003373 1.4e-09 66.2 76 44.7
FAN15G0407 Fragaria x ananassa HOM05D000186 ORTHO05D002329 1.8e-09 65.9 67 47.8
Medtr6g008055 Medicago truncatula HOM05D000938 ORTHO05D003373 1.8e-09 65.9 79 43.0
FvH4_2g18461 Fragaria vesca HOM05D000938 ORTHO05D003373 2.3e-09 65.5 67 46.3
FAN24G3389 Fragaria x ananassa HOM05D000186 ORTHO05D002329 2.3e-09 65.5 67 46.3
Gohir.D07G225100 Gossypium hirsutum HOM05D000938 ORTHO05D003373 4.0e-09 64.7 74 43.2
Gorai.001G259500 Gossypium raimondii HOM05D000938 ORTHO05D003373 4.0e-09 64.7 74 43.2
QL02p078129 Quercus lobata HOM05D000938 ORTHO05D003373 4.0e-09 64.7 91 41.8
QL93p0205_0194 Quercus lobata HOM05D000938 ORTHO05D003373 4.0e-09 64.7 91 41.8
ClCG10G014520 Citrullus lanatus HOM05D000938 ORTHO05D003373 5.2e-09 64.3 73 42.5
ClCG10G014530 Citrullus lanatus HOM05D000938 ORTHO05D003373 5.2e-09 64.3 73 42.5
PGR142G3985 Punica granatum HOM05D000938 ORTHO05D003373 6.8e-09 63.9 79 39.2
TPR.G35838 Trifolium pratense HOM05D000938 ORTHO05D003373 6.8e-09 63.9 77 41.6
ATR1149G066 Amborella trichopoda HOM05D000938 ORTHO05D003373 8.9e-09 63.5 66 45.5
CiPaw.03G034800 Carya illinoinensis HOM05D000938 ORTHO05D003373 8.9e-09 63.5 69 50.7
Gohir.A07G218000 Gossypium hirsutum HOM05D000938 ORTHO05D003373 8.9e-09 63.5 74 43.2
MD09G1038500 Malus domestica HOM05D000938 ORTHO05D003373 8.9e-09 63.5 66 45.5
TWI36G0225 Tripterygium wilfordii HOM05D000938 ORTHO05D003373 2.0e-08 62.4 70 47.1
FAN27G1657 Fragaria x ananassa HOM05D000186 ORTHO05D002329 2.6e-08 62.0 62 46.8
Nitab4.5_0005797g0040 Nicotiana tabacum HOM05D000938 ORTHO05D003373 2.6e-08 62.0 71 42.3
Potri.019G007227 Populus trichocarpa HOM05D000938 ORTHO05D003373 3.4e-08 61.6 74 39.2
QL04p034975 Quercus lobata HOM05D000938 ORTHO05D003373 3.4e-08 61.6 80 41.2
Atru.chr8.2419 Acer truncatum HOM05D000938 ORTHO05D003373 4.4e-08 61.2 64 45.3
BcaC04g18999 Brassica carinata HOM05D000938 ORTHO05D003373 4.4e-08 61.2 67 43.3
C09p62240 Brassica napus HOM05D000938 ORTHO05D003373 4.4e-08 61.2 67 43.3
Thhalv10013249m.g Eutrema salsugineum HOM05D000938 ORTHO05D003373 4.4e-08 61.2 68 47.1
Lsat_1_v5_gn_4_180921 Lactuca sativa HOM05D000938 ORTHO05D003373 4.4e-08 61.2 60 43.3
arahy.Tifrunner.gnm1.ann1.4FF1BV Arachis hypogaea HOM05D000938 ORTHO05D003373 5.7e-08 60.8 78 43.6
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 5.7e-08 60.8 74 43.2
Duzib264G0890 Durio zibethinus HOM05D000938 ORTHO05D003373 5.7e-08 60.8 63 47.6
PGR142G0819 Punica granatum HOM05D000938 ORTHO05D003373 5.7e-08 60.8 78 39.7
PGR142G3586 Punica granatum HOM05D000938 ORTHO05D003373 5.7e-08 60.8 78 39.7
QL02p078107 Quercus lobata HOM05D000938 ORTHO05D003373 5.7e-08 60.8 77 41.6
arahy.Tifrunner.gnm1.ann1.7BF3PT Arachis hypogaea HOM05D000938 ORTHO05D003373 7.5e-08 60.5 78 43.6
Nitab4.5_0011847g0010 Nicotiana tabacum HOM05D000938 ORTHO05D003373 7.5e-08 60.5 64 46.9
BcaB08g36937 Brassica carinata HOM05D000938 ORTHO05D003373 9.8e-08 60.1 68 45.6
Sed0024325 Sechium edule HOM05D000938 ORTHO05D003373 9.8e-08 60.1 73 41.1
TPR.G31458 Trifolium pratense HOM05D000938 ORTHO05D003373 9.8e-08 60.1 85 41.2
Haze_14641 Corylus avellana HOM05D000938 ORTHO05D003373 1.3e-07 59.7 79 39.2
QL03p072630 Quercus lobata HOM05D000938 ORTHO05D003373 1.3e-07 59.7 77 45.5
Thecc.04G003800 Theobroma cacao HOM05D000938 ORTHO05D003373 1.3e-07 59.7 73 41.1
MELO3C009925.2 Cucumis melo HOM05D000938 ORTHO05D003373 1.7e-07 59.3 79 38.0
CARHR198410 Cardamine hirsuta HOM05D000938 ORTHO05D003373 2.2e-07 58.9 77 45.5
Peaxi162Scf00195g00127 Petunia axillaris HOM05D000938 ORTHO05D003373 2.2e-07 58.9 71 43.7
QL03p072643 Quercus lobata HOM05D000938 ORTHO05D003373 2.2e-07 58.9 80 40.0
QL03p072773 Quercus lobata HOM05D000938 ORTHO05D003373 2.2e-07 58.9 80 40.0
Haze_05423 Corylus avellana HOM05D000011 ORTHO05D003373 3.7e-07 58.2 69 44.9
Dinv35026 Davidia involucrata HOM05D000938 ORTHO05D003373 3.7e-07 58.2 59 45.8
Rhsim10G0027700 Rhododendron simsii HOM05D000938 ORTHO05D003373 3.7e-07 58.2 72 44.4
Rhsim10G0029000 Rhododendron simsii HOM05D000938 ORTHO05D003373 3.7e-07 58.2 72 44.4
Sp6g29130 Schrenkiella parvula HOM05D000938 ORTHO05D003373 3.7e-07 58.2 68 44.1
A10p23830 Brassica napus HOM05D000938 ORTHO05D003373 4.9e-07 57.8 67 43.3
BraA10t44448Z Brassica rapa HOM05D000938 ORTHO05D003373 4.9e-07 57.8 67 43.3
Haze_19126 Corylus avellana HOM05D000938 ORTHO05D003373 4.9e-07 57.8 78 39.7
Prupe.3G279000 Prunus persica HOM05D000938 ORTHO05D003373 4.9e-07 57.8 73 41.1
VMungo0464G1558 Vigna mungo HOM05D000938 ORTHO05D003373 4.9e-07 57.8 85 37.6
CsaV3_3G042050 Cucumis sativus L. HOM05D000938 ORTHO05D003373 6.3e-07 57.4 70 40.0
Eucgr.I01840 Eucalyptus grandis HOM05D000938 ORTHO05D003373 6.3e-07 57.4 70 41.4
Lju41A31T31 Lonicera japonica HOM05D000938 ORTHO05D003373 6.3e-07 57.4 64 45.3
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 6.3e-07 57.4 72 45.8
TPR.G35844 Trifolium pratense HOM05D000938 ORTHO05D003373 6.3e-07 57.4 61 44.3
Aa31LG11G14570 Aethionema arabicum HOM05D000938 ORTHO05D003373 8.3e-07 57.0 77 39.0
Manes.17G118200 Manihot esculenta HOM05D000938 ORTHO05D003373 8.3e-07 57.0 82 37.8
PGSC0003DMG400021206 Solanum tuberosum HOM05D000938 ORTHO05D003373 8.3e-07 57.0 63 46.0
MD17G1039700 Malus domestica HOM05D000938 ORTHO05D003373 1.1e-06 56.6 66 43.9
CSS0029236 Camellia sinensis var. sinensis HOM05D000938 ORTHO05D003373 1.4e-06 56.2 70 38.6
Solyc02g069400.3 Solanum lycopersicum HOM05D000938 ORTHO05D003373 1.4e-06 56.2 64 43.8
Sopen02g018550 Solanum pennellii HOM05D000938 ORTHO05D003373 1.4e-06 56.2 64 43.8
DCAR_006077 Daucus carota HOM05D000938 ORTHO05D003373 1.8e-06 55.8 65 44.6
Eucgr.I01837 Eucalyptus grandis HOM05D000938 ORTHO05D003373 1.8e-06 55.8 74 40.5
Lju41C30G11 Lonicera japonica HOM05D000938 ORTHO05D003373 1.8e-06 55.8 68 42.6
Oeu029382.1 Olea europaea HOM05D000938 ORTHO05D003373 1.8e-06 55.8 64 43.8
vmacro05793 Vaccinium macrocarpon HOM05D000938 ORTHO05D003373 1.8e-06 55.8 70 41.4
Eucgr.I01864 Eucalyptus grandis HOM05D000938 ORTHO05D003373 2.4e-06 55.5 74 41.9
MD17G1039800 Malus domestica HOM05D000938 ORTHO05D003373 2.4e-06 55.5 66 42.4
VMungo0464G1973 Vigna mungo HOM05D000938 ORTHO05D003373 2.4e-06 55.5 86 41.9
AT5G14930 Arabidopsis thaliana HOM05D000938 ORTHO05D003373 3.1e-06 55.1 77 42.9
CARHR198390 Cardamine hirsuta HOM05D000938 ORTHO05D003373 3.1e-06 55.1 78 42.3
MD17G1039600 Malus domestica HOM05D000938 ORTHO05D003373 3.1e-06 55.1 59 45.8
Prupe.3G279300 Prunus persica HOM05D000938 ORTHO05D003373 3.1e-06 55.1 73 39.7
Nn3g16989 Nelumbo nucifera HOM05D000938 ORTHO05D003373 4.1e-06 54.7 65 38.5
Cpa.g.sc14.87 Carica papaya HOM05D000938 ORTHO05D003373 5.4e-06 54.3 70 38.6
Psat1g079200 Pisum sativum HOM05D000938 ORTHO05D003373 5.4e-06 54.3 55 47.3
QL02p078120 Quercus lobata HOM05D000030 ORTHO05D000009 5.4e-06 54.3 71 43.7
ECA232G0705 Erigeron canadensis HOM05D000938 ORTHO05D003373 7.0e-06 53.9 71 38.0
Nn3g16990 Nelumbo nucifera HOM05D000938 ORTHO05D003373 7.0e-06 53.9 61 39.3
ECA232G1211 Erigeron canadensis HOM05D000938 ORTHO05D003373 9.2e-06 53.5 72 38.9
MD09G1039800 Malus domestica HOM05D000938 ORTHO05D003373 9.2e-06 53.5 62 38.7
MD17G1040000 Malus domestica HOM05D000938 ORTHO05D003373 9.2e-06 53.5 66 42.4


User provided reference genes

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