Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 0.0e+00 1420.2 733 100.0
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 0.0e+00 1339.3 739 93.2
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 0.0e+00 1327.0 735 93.2
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 0.0e+00 1298.5 722 92.5
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.6e-284 981.5 545 93.6
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 1.3e-222 776.9 771 58.0
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 9.6e-221 770.8 769 58.4
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 2.1e-151 540.4 745 47.4
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 1.5e-149 534.3 479 68.1
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 8.6e-145 518.5 751 46.2
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 1.5e-144 517.7 794 45.5
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 1.6e-143 514.2 761 46.1
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 4.0e-134 483.0 558 51.4
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 1.5e-133 481.1 760 43.6
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 1.3e-132 478.0 757 43.2
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 1.7e-132 477.6 308 86.7
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 2.9e-132 476.9 757 43.1
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 2.7e-130 470.3 755 44.1
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 1.3e-129 468.0 713 44.2
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 5.0e-129 466.1 710 44.5
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 1.1e-128 464.9 816 42.4
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 1.5e-128 464.5 720 44.6
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 8.1e-127 458.8 747 44.7
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 1.2e-125 454.9 751 41.5
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 1.3e-124 451.4 755 42.0
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 1.9e-120 437.6 725 44.7
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 9.5e-120 435.3 687 42.8
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 2.4e-118 430.6 752 42.7
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 5.2e-118 429.5 715 42.9
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 9.9e-117 425.2 751 41.5
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 3.2e-115 420.2 651 42.2
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 6.0e-114 416.0 743 40.5
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 1.3e-113 414.8 741 40.5
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 2.4e-110 404.1 740 39.9
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 5.2e-110 402.9 687 39.9
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 1.3e-108 398.3 738 39.3
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 2.9e-108 397.1 673 40.7
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 1.9e-107 394.4 702 40.3
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 1.6e-106 391.3 629 41.2
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 2.7e-106 390.6 720 40.7
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 7.8e-106 389.0 718 40.1
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 7.8e-106 389.0 705 38.9
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 1.3e-105 388.3 702 40.6
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.7e-105 387.9 718 40.8
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 1.3e-103 381.7 701 40.4
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 1.6e-103 381.3 705 41.0
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 4.8e-103 379.8 738 39.0
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 8.1e-103 379.0 618 42.7
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 4.0e-102 376.7 730 39.9
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 6.9e-102 375.9 714 38.5
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 6.9e-102 375.9 737 38.1
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 1.2e-101 375.2 506 50.0
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 1.5e-101 374.8 703 38.1
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 3.4e-101 373.6 728 38.5
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 7.6e-101 372.5 755 39.1
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 8.4e-100 369.0 710 38.7
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 3.2e-99 367.1 665 38.6
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 7.9e-98 362.5 562 45.6
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 7.9e-98 362.5 698 37.0
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 2.3e-97 360.9 480 42.9
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 3.0e-97 360.5 573 42.6
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 5.1e-97 359.8 805 36.8
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.1e-96 358.6 705 39.3
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 2.5e-96 357.5 591 40.4
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 1.6e-95 354.8 649 39.6
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 2.8e-95 354.0 722 39.1
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.1e-94 352.1 625 40.5
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.8e-94 351.3 642 40.2
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 5.3e-94 349.7 696 39.8
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 6.9e-94 349.4 748 40.2
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 1.2e-93 348.6 703 36.7
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 3.4e-93 347.1 591 40.3
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 8.4e-92 342.4 721 36.1
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 8.4e-92 342.4 721 36.1
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 1.9e-91 341.3 593 39.5
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 1.9e-91 341.3 649 38.4
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 1.3e-89 335.1 613 39.6
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 1.8e-89 334.7 563 40.0
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 2.3e-89 334.3 700 38.7
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 3.0e-89 334.0 711 35.7
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 4.3e-88 330.1 668 39.8
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 2.0e-85 321.2 379 49.6
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 6.5e-84 316.2 456 44.3
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 9.3e-83 312.4 886 34.2
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 7.9e-82 309.3 706 34.8
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 3.3e-80 303.9 447 43.2
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 1.6e-79 301.6 528 41.7
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 2.6e-77 294.3 536 41.0
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.2e-76 291.2 453 44.6
FAN08G2149 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.6e-74 283.9 305 61.3
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 6.3e-71 273.1 230 62.6
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 1.2e-61 242.3 371 41.2
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 8.2e-55 219.5 618 30.7
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 7.0e-54 216.5 374 44.7
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.0e-52 212.6 537 36.9
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 2.5e-51 208.0 292 44.5
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 5.5e-51 206.8 448 37.1
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 8.0e-50 203.0 585 30.3
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 1.4e-49 202.2 680 28.8
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 3.0e-49 201.1 345 36.8
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 7.5e-48 196.4 447 37.4
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 1.4e-46 192.2 369 39.3
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 3.8e-44 184.1 329 44.4
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 1.6e-42 178.7 438 35.6
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 3.4e-40 171.0 180 58.3
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 1.7e-39 168.7 802 27.2
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 3.1e-38 164.5 207 44.9
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 2.1e-34 151.8 345 38.3
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 1.4e-30 139.0 255 37.3
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 1.0e-28 132.9 350 30.9
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 2.5e-27 128.3 113 64.6
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 4.3e-27 127.5 353 39.1
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 2.6e-24 118.2 272 42.3
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 4.9e-23 114.0 80 72.5
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 6.6e-20 103.6 300 30.7
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 4.7e-18 97.4 263 36.1
FAN04G1450 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.2e-16 92.8 50 94.0
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 1.9e-14 85.5 119 42.9
TPR.G14651 Trifolium pratense HOM05D006063 ORTHO05D000023 7.3e-11 73.6 248 29.4
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 1.8e-09 68.9 48 77.1
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 8.9e-09 66.6 266 29.7
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 1.5e-08 65.9 40 82.5


User provided reference genes

Program Settings