Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.8e-99 364.0 184 100.0
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.8e-99 364.0 184 100.0
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 9.9e-74 280.4 144 99.3
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 9.9e-74 280.4 144 99.3
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 9.9e-74 280.4 144 99.3
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.2e-73 279.3 144 98.6
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.9e-73 278.9 144 98.6
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 3.0e-70 268.9 145 93.8
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 2.7e-55 219.2 145 75.2
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 4.6e-55 218.4 144 76.4
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.0e-54 217.2 145 71.7
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 2.3e-54 216.1 145 72.4
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 3.9e-54 215.3 144 71.5
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.1e-53 213.8 142 73.9
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 2.5e-53 212.6 145 69.7
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 2.5e-53 212.6 142 71.8
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 9.6e-53 210.7 180 59.4
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 2.1e-52 209.5 145 71.0
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 3.6e-52 208.8 144 70.8
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 3.6e-52 208.8 145 71.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 4.8e-52 208.4 145 70.3
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 8.1e-52 207.6 145 69.7
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 8.1e-52 207.6 145 70.3
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 1.1e-51 207.2 145 70.3
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.1e-51 207.2 145 69.0
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.1e-51 207.2 145 69.0
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 1.1e-51 207.2 145 69.0
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.1e-51 207.2 145 66.2
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 2.4e-51 206.1 153 68.6
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 4.0e-51 205.3 145 70.3
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 4.0e-51 205.3 145 69.0
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 9.0e-51 204.1 145 69.0
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.2e-50 203.8 145 65.5
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.5e-50 203.4 145 68.3
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.0e-50 203.0 145 65.5
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 2.0e-50 203.0 145 67.6
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 3.4e-50 202.2 145 69.7
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 3.4e-50 202.2 145 66.9
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.4e-50 202.2 145 65.5
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.4e-50 202.2 145 65.5
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 4.5e-50 201.8 145 67.6
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 7.6e-50 201.1 145 64.1
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 9.9e-50 200.7 145 67.6
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 9.9e-50 200.7 145 68.3
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.3e-49 200.3 145 63.4
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.3e-49 200.3 145 63.4
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.7e-49 199.9 145 63.4
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-49 199.9 145 63.4
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 2.2e-49 199.5 145 67.6
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.2e-49 199.5 145 68.3
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 2.2e-49 199.5 145 67.6
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 2.2e-49 199.5 144 67.4
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.9e-49 199.1 144 64.6
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 3.8e-49 198.7 145 65.5
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 6.4e-49 198.0 145 62.8
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 6.4e-49 198.0 144 66.7
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 1.4e-48 196.8 143 64.3
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 2.4e-48 196.1 146 65.1
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 2.4e-48 196.1 143 63.6
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.2e-48 195.7 144 61.8
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.2e-48 195.7 145 62.1
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 5.4e-48 194.9 145 67.6
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 5.4e-48 194.9 143 64.3
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 9.3e-48 194.1 152 61.8
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.2e-47 193.7 143 64.3
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 2.7e-47 192.6 145 61.4
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.7e-47 192.6 145 60.7
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 2.7e-47 192.6 144 63.9
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 3.5e-47 192.2 144 62.5
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 4.6e-47 191.8 145 63.4
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 6.0e-47 191.4 142 62.7
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 6.0e-47 191.4 144 61.8
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 6.0e-47 191.4 143 65.0
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 7.9e-47 191.0 157 58.6
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 7.9e-47 191.0 144 63.2
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.0e-46 190.7 145 65.5
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.0e-46 190.7 142 61.3
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.0e-46 190.7 145 63.4
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.8e-46 189.9 142 62.0
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 1.8e-46 189.9 145 60.0
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.8e-46 189.9 142 64.8
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 2.3e-46 189.5 145 63.4
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 2.3e-46 189.5 144 63.2
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 2.3e-46 189.5 144 62.5
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 2.3e-46 189.5 145 62.8
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 3.0e-46 189.1 144 61.1
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 5.1e-46 188.3 145 62.1
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 5.1e-46 188.3 142 62.0
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.5e-45 186.8 162 59.9
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.9e-45 186.4 135 67.4
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.9e-45 186.4 145 61.4
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.9e-45 186.4 145 61.4
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 3.3e-45 185.7 142 59.2
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 4.3e-45 185.3 142 63.4
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 5.6e-45 184.9 145 61.4
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 7.4e-45 184.5 138 63.0
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.6e-44 183.3 145 60.7
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.6e-44 183.3 142 60.6
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 2.1e-44 183.0 152 57.2
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 2.8e-44 182.6 156 57.7
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 6.2e-44 181.4 176 55.1
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 8.1e-44 181.0 144 56.9
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 8.1e-44 181.0 144 62.5
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 1.4e-43 180.3 142 59.2
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.4e-43 180.3 144 60.4
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.8e-43 179.9 144 59.0
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.4e-43 179.5 152 58.6
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 4.0e-43 178.7 155 54.8
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.3e-43 178.3 147 55.8
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 6.9e-43 177.9 144 59.0
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 6.9e-43 177.9 145 61.4
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 9.0e-43 177.6 143 55.9
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.5e-42 176.8 140 60.7
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 2.0e-42 176.4 150 58.0
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 5.8e-42 174.9 147 53.7
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 7.6e-42 174.5 144 55.6
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 7.6e-42 174.5 142 56.3
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 1.0e-41 174.1 156 54.5
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.7e-41 173.3 144 57.6
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 3.8e-41 172.2 144 57.6
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.9e-41 171.8 165 55.2
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 8.4e-41 171.0 145 57.2
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 1.4e-40 170.2 144 53.5
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.9e-40 169.9 175 47.4
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.9e-40 169.9 145 55.9
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 2.5e-40 169.5 140 55.0
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 2.5e-40 169.5 143 53.8
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 2.5e-40 169.5 143 53.8
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 2.5e-40 169.5 143 53.8
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 7.1e-40 167.9 147 51.7
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 9.3e-40 167.5 143 55.9
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 2.7e-39 166.0 188 50.0
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 2.7e-39 166.0 142 59.9
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.5e-39 165.6 144 53.5
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 6.0e-39 164.9 217 44.2
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 5.7e-37 158.3 143 56.6
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 3.1e-35 152.5 142 53.5
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.2e-34 150.6 168 48.2
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 4.5e-34 148.7 108 66.7
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 4.5e-34 148.7 108 66.7
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 2.2e-33 146.4 107 62.6
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.1e-31 139.8 105 61.9
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 3.9e-30 135.6 108 59.3
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 8.7e-30 134.4 94 69.1
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 2.8e-28 129.4 149 45.6
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.8e-28 129.4 133 51.9
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 8.2e-28 127.9 146 47.3
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.1e-27 127.5 123 52.8
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.1e-27 127.5 123 52.8
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.4e-27 127.1 95 68.4
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 3.1e-27 125.9 84 69.0
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 5.9e-26 121.7 84 66.7
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.3e-25 120.6 84 69.0
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 2.2e-25 119.8 148 42.6
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.6e-23 113.6 91 59.3
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-22 110.2 142 43.7
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 3.0e-22 109.4 100 52.0
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 1.5e-21 107.1 136 40.4
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 5.7e-21 105.1 91 50.5
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 6.9e-19 98.2 138 34.1
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 6.9e-19 98.2 96 47.9
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.7e-17 93.6 129 34.9
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 3.2e-16 89.4 148 36.5
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.7e-15 85.5 140 32.9
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 1.4e-14 84.0 72 56.9
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 7.4e-13 78.2 102 41.2
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 9.7e-13 77.8 52 69.2
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 8.2e-12 74.7 86 50.0
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.1e-11 72.4 107 29.9
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.2e-10 70.9 98 40.8
FAN19G0007 Fragaria x ananassa HOM05D012211 ORTHO05D004492 2.6e-10 69.7 73 54.8
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 3.5e-10 69.3 142 26.1
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 1.0e-09 67.8 44 68.2
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 2.2e-09 66.6 127 26.8
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 5.0e-09 65.5 126 30.2
PRCOL_00002126 Prasinoderma coloniale HOM05D003922 ORTHO05D004492 3.0e-06 56.2 134 29.9


User provided reference genes

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